1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.model.common;
|
11
|
|
12
|
|
13
|
import java.net.URI;
|
14
|
import java.util.HashSet;
|
15
|
import java.util.Iterator;
|
16
|
import java.util.List;
|
17
|
import java.util.Set;
|
18
|
import java.util.SortedSet;
|
19
|
import java.util.TreeSet;
|
20
|
import java.util.UUID;
|
21
|
|
22
|
import javax.persistence.Entity;
|
23
|
import javax.persistence.FetchType;
|
24
|
import javax.persistence.Inheritance;
|
25
|
import javax.persistence.InheritanceType;
|
26
|
import javax.persistence.OneToMany;
|
27
|
import javax.persistence.Transient;
|
28
|
import javax.xml.bind.annotation.XmlAccessType;
|
29
|
import javax.xml.bind.annotation.XmlAccessorType;
|
30
|
import javax.xml.bind.annotation.XmlElement;
|
31
|
import javax.xml.bind.annotation.XmlElementWrapper;
|
32
|
import javax.xml.bind.annotation.XmlIDREF;
|
33
|
import javax.xml.bind.annotation.XmlRootElement;
|
34
|
import javax.xml.bind.annotation.XmlSchemaType;
|
35
|
import javax.xml.bind.annotation.XmlType;
|
36
|
|
37
|
import org.apache.log4j.Logger;
|
38
|
import org.hibernate.annotations.Cascade;
|
39
|
import org.hibernate.annotations.CascadeType;
|
40
|
import org.hibernate.annotations.Type;
|
41
|
import org.hibernate.envers.Audited;
|
42
|
import org.hibernate.search.annotations.Analyze;
|
43
|
import org.hibernate.search.annotations.Field;
|
44
|
import org.hibernate.search.annotations.Indexed;
|
45
|
import org.hibernate.search.annotations.IndexedEmbedded;
|
46
|
|
47
|
|
48
|
/**
|
49
|
* A single enumeration must only contain DefinedTerm instances of one kind
|
50
|
* (this means a subclass of DefinedTerm).
|
51
|
* @author m.doering
|
52
|
* @created 08-Nov-2007 13:06:23
|
53
|
*/
|
54
|
@XmlAccessorType(XmlAccessType.FIELD)
|
55
|
@XmlType(name = "TermVocabulary", propOrder = {
|
56
|
"termSourceUri",
|
57
|
"terms"
|
58
|
})
|
59
|
@XmlRootElement(name = "TermVocabulary")
|
60
|
@Entity
|
61
|
@Indexed(index = "eu.etaxonomy.cdm.model.common.TermVocabulary")
|
62
|
@Audited
|
63
|
@Inheritance(strategy=InheritanceType.SINGLE_TABLE)
|
64
|
public class TermVocabulary<T extends DefinedTermBase> extends TermBase implements Iterable<T> {
|
65
|
private static final long serialVersionUID = 1925052321596648672L;
|
66
|
private static final Logger logger = Logger.getLogger(TermVocabulary.class);
|
67
|
|
68
|
//The vocabulary source (e.g. ontology) defining the terms to be loaded when a database is created for the first time.
|
69
|
// Software can go and grap these terms incl labels and description.
|
70
|
// UUID needed? Further vocs can be setup through our own ontology.
|
71
|
@XmlElement(name = "TermSourceURI")
|
72
|
@Type(type="uriUserType")
|
73
|
@Field(analyze = Analyze.NO)
|
74
|
private URI termSourceUri;
|
75
|
|
76
|
|
77
|
//TODO Changed
|
78
|
@XmlElementWrapper(name = "Terms")
|
79
|
@XmlElement(name = "Term")
|
80
|
@XmlIDREF
|
81
|
@XmlSchemaType(name = "IDREF")
|
82
|
@OneToMany(mappedBy="vocabulary", fetch=FetchType.LAZY, targetEntity = DefinedTermBase.class)
|
83
|
@Type(type="DefinedTermBase")
|
84
|
@Cascade({CascadeType.SAVE_UPDATE, CascadeType.MERGE})
|
85
|
@IndexedEmbedded(depth = 2)
|
86
|
protected Set<T> terms = getNewTermSet();
|
87
|
|
88
|
// ********************************* FACTORY METHODS *****************************************/
|
89
|
|
90
|
|
91
|
public static TermVocabulary NewInstance(TermType type){
|
92
|
return new TermVocabulary(type);
|
93
|
}
|
94
|
|
95
|
public static TermVocabulary NewInstance(TermType type, String description, String label, String abbrev, URI termSourceUri){
|
96
|
return new TermVocabulary(type, description, label, abbrev, termSourceUri);
|
97
|
}
|
98
|
|
99
|
// ************************* CONSTRUCTOR *************************************************
|
100
|
|
101
|
//for hibernate use only
|
102
|
@Deprecated
|
103
|
protected TermVocabulary() {
|
104
|
super(TermType.Unknown);
|
105
|
}
|
106
|
|
107
|
protected TermVocabulary(TermType type) {
|
108
|
super(type);
|
109
|
}
|
110
|
|
111
|
protected TermVocabulary(TermType type, String term, String label, String labelAbbrev, URI termSourceUri) {
|
112
|
super(type, term, label, labelAbbrev);
|
113
|
setTermSourceUri(termSourceUri);
|
114
|
}
|
115
|
|
116
|
|
117
|
// ******************* METHODS *************************************************/
|
118
|
|
119
|
public T findTermByUuid(UUID uuid){
|
120
|
for(T t : terms) {
|
121
|
if(t.getUuid().equals(uuid)) {
|
122
|
return t;
|
123
|
}
|
124
|
}
|
125
|
return null;
|
126
|
}
|
127
|
|
128
|
@Transient
|
129
|
Set<T> getNewTermSet() {
|
130
|
return new HashSet<T>();
|
131
|
}
|
132
|
|
133
|
public Set<T> getTerms() {
|
134
|
return terms;
|
135
|
}
|
136
|
|
137
|
public void addTerm(T term) {
|
138
|
term.setVocabulary(this);
|
139
|
this.terms.add(term);
|
140
|
}
|
141
|
public void removeTerm(T term) {
|
142
|
this.terms.remove(term);
|
143
|
term.setVocabulary(null);
|
144
|
}
|
145
|
|
146
|
public URI getTermSourceUri() {
|
147
|
return termSourceUri;
|
148
|
}
|
149
|
public void setTermSourceUri(URI vocabularyUri) {
|
150
|
this.termSourceUri = vocabularyUri;
|
151
|
}
|
152
|
|
153
|
|
154
|
@Override
|
155
|
public Iterator<T> iterator() {
|
156
|
return terms.iterator(); // OLD: new TermIterator<T>(this.terms);
|
157
|
}
|
158
|
|
159
|
public int size(){
|
160
|
return terms.size();
|
161
|
}
|
162
|
|
163
|
|
164
|
/**
|
165
|
* Returns all terms of this vocabulary sorted by their representation defined by the given language.
|
166
|
* If such an representation does not exist, the representation of the default language is testing instead for ordering.
|
167
|
* @param language
|
168
|
* @return
|
169
|
*/
|
170
|
public SortedSet<T> getTermsOrderedByLabels(Language language){
|
171
|
TermLanguageComparator<T> comp = new TermLanguageComparator<T>();
|
172
|
comp.setCompareLanguage(language);
|
173
|
|
174
|
SortedSet<T> result = new TreeSet<T>(comp);
|
175
|
result.addAll(getTerms());
|
176
|
return result;
|
177
|
}
|
178
|
|
179
|
|
180
|
/* (non-Javadoc)
|
181
|
* @see eu.etaxonomy.cdm.model.common.ILoadableTerm#readCsvLine(java.util.List)
|
182
|
*/
|
183
|
public TermVocabulary<T> readCsvLine(List<String> csvLine) {
|
184
|
return readCsvLine(csvLine, Language.CSV_LANGUAGE());
|
185
|
}
|
186
|
|
187
|
public TermVocabulary<T> readCsvLine(List<String> csvLine, Language lang) {
|
188
|
this.setUuid(UUID.fromString(csvLine.get(0)));
|
189
|
this.setUri(URI.create(csvLine.get(1)));
|
190
|
String label = csvLine.get(2).trim();
|
191
|
String description = csvLine.get(3);
|
192
|
|
193
|
//see http://dev.e-taxonomy.eu/trac/ticket/3550
|
194
|
this.addRepresentation(Representation.NewInstance(description, label, null, lang) );
|
195
|
//preliminary until above is solved
|
196
|
// this.setTitleCache(label, true);
|
197
|
|
198
|
TermType termType = TermType.getByKey(csvLine.get(4));
|
199
|
if (termType == null){
|
200
|
throw new IllegalArgumentException("TermType can not be mapped: " + csvLine.get(4));
|
201
|
}
|
202
|
this.setTermType(termType);
|
203
|
|
204
|
return this;
|
205
|
}
|
206
|
|
207
|
//*********************** CLONE ********************************************************/
|
208
|
|
209
|
/**
|
210
|
* Clones <i>this</i> TermVocabulary. This is a shortcut that enables to create
|
211
|
* a new instance that differs only slightly from <i>this</i> TermVocabulary.
|
212
|
* The terms of the original vocabulary are cloned
|
213
|
*
|
214
|
* @see eu.etaxonomy.cdm.model.common.TermBase#clone()
|
215
|
* @see java.lang.Object#clone()
|
216
|
*/
|
217
|
@Override
|
218
|
public Object clone() {
|
219
|
TermVocabulary<T> result;
|
220
|
try {
|
221
|
result = (TermVocabulary<T>) super.clone();
|
222
|
|
223
|
}catch (CloneNotSupportedException e) {
|
224
|
logger.warn("Object does not implement cloneable");
|
225
|
e.printStackTrace();
|
226
|
return null;
|
227
|
}
|
228
|
result.terms = new HashSet<T>();
|
229
|
for (T term: this.terms){
|
230
|
result.addTerm((T)term.clone());
|
231
|
}
|
232
|
|
233
|
return result;
|
234
|
}
|
235
|
|
236
|
}
|