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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.persistence.dao.hibernate.common;
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.Enumeration;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Locale;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.hibernate.Criteria;
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import org.hibernate.Query;
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import org.hibernate.Session;
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import org.hibernate.criterion.Criterion;
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import org.hibernate.criterion.Projections;
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import org.hibernate.criterion.Restrictions;
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import org.hibernate.envers.query.AuditEntity;
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import org.hibernate.envers.query.AuditQuery;
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import org.springframework.stereotype.Repository;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.media.RightsType;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.model.view.AuditEvent;
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import eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.persistence.query.OrderHint;
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/**
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 * @author a.kohlbecker
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 * @created 29.05.2008
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 * @version 1.0
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 */
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@Repository
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public class DefinedTermDaoImpl extends IdentifiableDaoBase<DefinedTermBase> implements IDefinedTermDao{
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	private static final Logger logger = Logger.getLogger(DefinedTermDaoImpl.class);
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	public DefinedTermDaoImpl() {
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		super(DefinedTermBase.class);
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		indexedClasses = new Class[25];
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		indexedClasses[0] = Rank.class;
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		indexedClasses[1] = AnnotationType.class;
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		indexedClasses[2] = ExtensionType.class;
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		indexedClasses[3] = Language.class;
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		indexedClasses[4] = MarkerType.class;
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		indexedClasses[5] = MeasurementUnit.class;
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		indexedClasses[6] = DefinedTerm.class;
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		indexedClasses[7] = PresenceAbsenceTerm.class;
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		indexedClasses[8] = State.class;
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		indexedClasses[9] = StatisticalMeasure.class;
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		indexedClasses[10] = TextFormat.class;
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		indexedClasses[11] = DerivationEventType.class;
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		indexedClasses[12] = NamedArea.class;
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		indexedClasses[13] = NamedAreaLevel.class;
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		indexedClasses[14] = NamedAreaType.class;
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		indexedClasses[15] = ReferenceSystem.class;
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		indexedClasses[16] = Country.class;
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		indexedClasses[17] = RightsType.class;
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		indexedClasses[18] = HybridRelationshipType.class;
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		indexedClasses[19] = NameRelationshipType.class;
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		indexedClasses[20] = NameTypeDesignationStatus.class;
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		indexedClasses[21] = NomenclaturalStatusType.class;
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		indexedClasses[22] = SpecimenTypeDesignationStatus.class;
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		indexedClasses[23] = SynonymRelationshipType.class;
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		indexedClasses[24] = TaxonRelationshipType.class;
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	}
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	/**
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	 * Searches by Label
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	 * @see eu.etaxonomy.cdm.persistence.dao.common.ITitledDao#findByTitle(java.lang.String)
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	 */
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	@Override
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    public List<DefinedTermBase> findByTitle(String queryString) {
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		return findByTitle(queryString, null);
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	}
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	/**
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	 * Searches by Label
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	 * @see eu.etaxonomy.cdm.persistence.dao.common.ITitledDao#findByTitle(java.lang.String, eu.etaxonomy.cdm.model.common.CdmBase)
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	 */
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	@Override
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    public List<DefinedTermBase> findByTitle(String queryString, CdmBase sessionObject) {
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		checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, CdmBase sessionObject)");
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		Session session = getSession();
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		if ( sessionObject != null ) {//attache the object to the session, TODO needed?
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			session.update(sessionObject);
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		}
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		Query query = session.createQuery("select term from DefinedTermBase term join fetch term.representations representation where representation.label = :label");
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		query.setParameter("label", queryString);
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		return query.list();
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	}
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	@Override
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    public List<DefinedTermBase> findByTitleAndClass(String queryString, Class<DefinedTermBase> clazz) {
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		checkNotInPriorView("DefinedTermDaoImpl.findByTitleAndClass(String queryString, Class<DefinedTermBase> clazz)");
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		Session session = getSession();
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		Criteria crit = session.createCriteria(clazz);
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		crit.add(Restrictions.ilike("persistentTitleCache", queryString));
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		List<DefinedTermBase> results = crit.list();
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		return results;
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	}
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	@Override
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    public List<DefinedTermBase> findByTitle(String queryString, MatchMode matchMode, int page, int pagesize, List<Criterion> criteria) {
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		//FIXME is query parametrised?
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		checkNotInPriorView("DefinedTermDaoImpl.findByTitle(String queryString, ITitledDao.MATCH_MODE matchMode, int page, int pagesize, List<Criterion> criteria)");
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		Criteria crit = getSession().createCriteria(type);
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		crit.add(Restrictions.ilike("titleCache", matchMode.queryStringFrom(queryString)));
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		crit.setMaxResults(pagesize);
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		int firstItem = (page - 1) * pagesize + 1;
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		crit.setFirstResult(firstItem);
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		List<DefinedTermBase> results = crit.list();
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		return results;
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	}
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	@Override
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    public Country getCountryByIso(String iso3166) {
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		// If iso639 = "" query returns non-unique result. We prevent this here:
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		if (StringUtils.isBlank(iso3166)) { return null; }
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		AuditEvent auditEvent = getAuditEventFromContext();
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		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
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		  Query query = getSession().createQuery("from Country where iso3166_A2 = :isoCode");
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		  query.setParameter("isoCode", iso3166);
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		  return (Country) query.uniqueResult();
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		} else {
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			AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Country.class,auditEvent.getRevisionNumber());
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			query.add(AuditEntity.property("iso3166_A2").eq(iso3166));
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			return (Country) query.getSingleResult();
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		}
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	}
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	@Override
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    public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz ) {
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		return getDefinedTermByRepresentationText(text,clazz,null,null);
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	}
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	@Override
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    public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer  pageNumber) {
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		checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationText(String text, Class<T> clazz, Integer pageSize,Integer  pageNumber)");
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		Criteria criteria = null;
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		if(clazz == null) {
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			criteria = getSession().createCriteria(type);
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		} else {
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			criteria = getSession().createCriteria(clazz);
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		}
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		criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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		if(pageSize != null) {
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			criteria.setMaxResults(pageSize);
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		    if(pageNumber != null) {
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		    	criteria.setFirstResult(pageNumber * pageSize);
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		    }
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		}
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		return criteria.list();
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	}
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	@Override
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    public int countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz) {
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	    checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationText(String text, Class<? extends DefinedTermBase> clazz)");
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		Criteria criteria = null;
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		if(clazz == null) {
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			criteria = getSession().createCriteria(type);
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		} else {
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			criteria = getSession().createCriteria(clazz);
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		}
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		criteria.createAlias("representations", "r").add(Restrictions.like("r.text", text));
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		criteria.setProjection(Projections.rowCount());
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		return ((Number)criteria.uniqueResult()).intValue();
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	}
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	@Override
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	public <T extends DefinedTermBase> List<T> getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber) {
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		checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByIdInVocabulary(String label, UUID vocUuid, Class<T> clazz, Integer pageSize, Integer pageNumber)");
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		Criteria criteria = null;
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		if(clazz == null) {
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			criteria = getSession().createCriteria(type);
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		} else {
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			criteria = getSession().createCriteria(clazz);
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		}
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		criteria.createAlias("vocabulary", "voc").add(Restrictions.like("voc.uuid", vocUuid))
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			.add(Restrictions.like("idInVocabulary", label, org.hibernate.criterion.MatchMode.EXACT));
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		if(pageSize != null) {
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			criteria.setMaxResults(pageSize);
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		    if(pageNumber != null) {
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		    	criteria.setFirstResult(pageNumber * pageSize);
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		    }
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		}
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		List<T> result = criteria.list();
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		return result;
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	}
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	@Override
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	public <T extends DefinedTermBase> List<T> getDefinedTermByRepresentationAbbrev(String text, Class<T> clazz, Integer pageSize,Integer  pageNumber) {
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		checkNotInPriorView("DefinedTermDaoImpl.getDefinedTermByRepresentationAbbrev(String abbrev, Class<T> clazz, Integer pageSize,Integer  pageNumber)");
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		Criteria criteria = null;
249
		if(clazz == null) {
250
			criteria = getSession().createCriteria(type);
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		} else {
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			criteria = getSession().createCriteria(clazz);
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		}
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		criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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		if(pageSize != null) {
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			criteria.setMaxResults(pageSize);
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		    if(pageNumber != null) {
260
		    	criteria.setFirstResult(pageNumber * pageSize);
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		    }
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		}
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		return criteria.list();
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	}
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	@Override
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	public int countDefinedTermByRepresentationAbbrev(String text, Class<? extends DefinedTermBase> clazz) {
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	    checkNotInPriorView("DefinedTermDaoImpl.countDefinedTermByRepresentationAbbrev(String abbrev, Class<? extends DefinedTermBase> clazz)");
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		Criteria criteria = null;
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		if(clazz == null) {
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			criteria = getSession().createCriteria(type);
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		} else {
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			criteria = getSession().createCriteria(clazz);
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		}
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		criteria.createAlias("representations", "r").add(Restrictions.like("r.abbreviatedLabel", text));
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		criteria.setProjection(Projections.rowCount());
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        return ((Number)criteria.uniqueResult()).intValue();
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	}
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	@Override
286
    public Language getLanguageByIso(String iso639) {
287
		if (iso639.length() < 2 || iso639.length() > 3) {
288
			logger.warn("Invalid length " + iso639.length() + " of ISO code. Length must be 2 or 3.");
289
			return null;
290
		}
291
		boolean isIso639_1 = iso639.length() == 2;
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293
		String queryStr;
294
		if (isIso639_1){
295
			queryStr = "from Language where iso639_1 = :isoCode";
296
		}else{
297
			queryStr = "from Language where idInVocabulary = :isoCode and vocabulary.uuid = :vocUuid";
298
		}
299
		AuditEvent auditEvent = getAuditEventFromContext();
300
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
301
		    Query query = getSession().createQuery(queryStr);
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		    query.setParameter("isoCode", iso639);
303
		    if (! isIso639_1){
304
		    	query.setParameter("vocUuid", Language.uuidLanguageVocabulary);
305
			}
306
		    return (Language) query.uniqueResult();
307
		} else {
308
			AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(Language.class,auditEvent.getRevisionNumber());
309
			if (isIso639_1){
310
				query.add(AuditEntity.property("iso639_1").eq(iso639));
311
			}else{
312
				query.add(AuditEntity.property("iso639_2").eq(iso639));
313
				query.add(AuditEntity.property("vocabulary.uuid").eq(Language.uuidLanguageVocabulary));
314
			}
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316
			return (Language)query.getSingleResult();
317
		}
318
	}
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320
	/**
321
	 *  FIXME this will result in a query per language - could you, given that iso codes
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	 *  are unique, use from Language where iso639_1 in (:isoCode) or iso639_2 in (:isoCode)
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	 */
324
	@Override
325
    public List<Language> getLanguagesByIso(List<String> iso639List) {
326
		List<Language> languages = new ArrayList<Language>(iso639List.size());
327
		for (String iso639 : iso639List) {
328
			languages.add(getLanguageByIso(iso639));
329
		}
330
		return languages;
331
	}
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333
	@Override
334
    public List<Language> getLanguagesByLocale(Enumeration<Locale> locales) {
335
		List<Language> languages = new ArrayList<Language>();
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		while(locales.hasMoreElements()) {
337
			Locale locale = locales.nextElement();
338
			languages.add(getLanguageByIso(locale.getLanguage()));
339
		}
340
		return languages;
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	}
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	@Override
344
    public int count(NamedAreaLevel level, NamedAreaType type) {
345
		AuditEvent auditEvent = getAuditEventFromContext();
346
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
347
		    Criteria criteria = getSession().createCriteria(NamedArea.class);
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349
		    if(level != null) {
350
			    criteria.add(Restrictions.eq("level",level));
351
		    }
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353
		    if(type != null) {
354
			    criteria.add(Restrictions.eq("type", type));
355
		    }
356

    
357
		    criteria.setProjection(Projections.rowCount());
358

    
359
	        return ((Number)criteria.uniqueResult()).intValue();
360
		} else {
361
			AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(NamedArea.class,auditEvent.getRevisionNumber());
362

    
363
			if(level != null) {
364
				query.add(AuditEntity.relatedId("level").eq(level.getId()));
365
		    }
366

    
367
		    if(type != null) {
368
		    	query.add(AuditEntity.relatedId("type").eq(type.getId()));
369
		    }
370
		    query.addProjection(AuditEntity.id().count());
371
		    return ((Long)query.getSingleResult()).intValue();
372
		}
373
	}
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375
	@Override
376
    public int countMedia(DefinedTermBase definedTerm) {
377
		checkNotInPriorView("DefinedTermDaoImpl.countMedia(DefinedTermBase definedTerm)");
378
		Query query = getSession().createQuery("select count(media) from DefinedTermBase definedTerm join definedTerm.media media where definedTerm = :definedTerm");
379
	    query.setParameter("definedTerm", definedTerm);
380

    
381
		return ((Long)query.uniqueResult()).intValue();
382
	}
383

    
384
	@Override
385
    public List<Media> getMedia(DefinedTermBase definedTerm, Integer pageSize,	Integer pageNumber) {
386
		checkNotInPriorView("DefinedTermDaoImpl.getMedia(DefinedTermBase definedTerm, Integer pageSize,	Integer pageNumber)");
387
		Query query = getSession().createQuery("select media from DefinedTermBase definedTerm join definedTerm.media media where definedTerm = :definedTerm");
388
		query.setParameter("definedTerm", definedTerm);
389

    
390
		if(pageSize != null) {
391
			query.setMaxResults(pageSize);
392
		    if(pageNumber != null) {
393
		    	query.setFirstResult(pageNumber * pageSize);
394
		    }
395
		}
396

    
397
		return query.list();
398
	}
399

    
400
	/* (non-Javadoc)
401
	 * @see eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao#list(eu.etaxonomy.cdm.model.location.NamedAreaLevel, eu.etaxonomy.cdm.model.location.NamedAreaType, java.lang.Integer, java.lang.Integer)
402
	 */
403
	@Override
404
    public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber) {
405
		AuditEvent auditEvent = getAuditEventFromContext();
406
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
407
            Criteria criteria = getSession().createCriteria(NamedArea.class);
408

    
409
		    if(level != null) {
410
			    criteria.add(Restrictions.eq("level",level));
411
		    }
412

    
413
		    if(type != null) {
414
			    criteria.add(Restrictions.eq("type", type));
415
		    }
416

    
417
		    if(pageSize != null) {
418
			    criteria.setMaxResults(pageSize);
419
		        if(pageNumber != null) {
420
		    	    criteria.setFirstResult(pageNumber * pageSize);
421
		        }
422
		    }
423

    
424
		    return criteria.list();
425
		} else {
426
            AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(NamedArea.class,auditEvent.getRevisionNumber());
427

    
428
			if(level != null) {
429
				query.add(AuditEntity.relatedId("level").eq(level.getId()));
430
		    }
431

    
432
		    if(type != null) {
433
		    	query.add(AuditEntity.relatedId("type").eq(type.getId()));
434
		    }
435

    
436
		    return query.getResultList();
437
		}
438
	}
439

    
440
	/* (non-Javadoc)
441
	 * @see eu.etaxonomy.cdm.persistence.dao.common.IDefinedTermDao#list(eu.etaxonomy.cdm.model.location.NamedAreaLevel, eu.etaxonomy.cdm.model.location.NamedAreaType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
442
	 */
443
	@Override
444
    public List<NamedArea> list(NamedAreaLevel level, NamedAreaType type, Integer pageSize, Integer pageNumber,
445
			List<OrderHint> orderHints, List<String> propertyPaths) {
446

    
447
		List<NamedArea> result;
448

    
449
		AuditEvent auditEvent = getAuditEventFromContext();
450
		if (auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
451
			Criteria criteria = getSession().createCriteria(NamedArea.class);
452

    
453
			if (level != null) {
454
				criteria.add(Restrictions.eq("level", level));
455
			}
456
			if (type != null) {
457
				criteria.add(Restrictions.eq("type", type));
458
			}
459
			if(orderHints != null){
460
				addOrder(criteria,orderHints);
461
			}
462
			if (pageSize != null) {
463
				criteria.setMaxResults(pageSize);
464
				if (pageNumber != null) {
465
					criteria.setFirstResult(pageNumber * pageSize);
466
				}
467
			}
468

    
469
			result = criteria.list();
470
		} else {
471
			AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(NamedArea.class,
472
				auditEvent.getRevisionNumber());
473
			if (level != null) {
474
				query.add(AuditEntity.relatedId("level").eq(level.getId()));
475
			}
476
			if (type != null) {
477
				query.add(AuditEntity.relatedId("type").eq(type.getId()));
478
			}
479
			result =  query.getResultList();
480
		}
481

    
482
		defaultBeanInitializer.initializeAll(result, propertyPaths);
483

    
484
		return result;
485
	}
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487

    
488
	@Override
489
    public <T extends DefinedTermBase> int countGeneralizationOf(T kindOf) {
490
		AuditEvent auditEvent = getAuditEventFromContext();
491
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
492
		    Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.kindOf = :kindOf");
493
		    query.setParameter("kindOf", kindOf);
494
		    return ((Long)query.uniqueResult()).intValue();
495
		} else {
496
            AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(DefinedTermBase.class,auditEvent.getRevisionNumber());
497
			query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
498
		    query.addProjection(AuditEntity.id().count());
499
		    return ((Long)query.getSingleResult()).intValue();
500
		}
501
	}
502

    
503
	@Override
504
    public <T extends DefinedTermBase> int countIncludes(Collection<T> partOf) {
505
		if (partOf == null || partOf.isEmpty()){
506
			return 0;
507
		}
508
		AuditEvent auditEvent = getAuditEventFromContext();
509
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
510
    		Query query = getSession().createQuery("select count(term) from DefinedTermBase term where term.partOf in (:partOf)");
511
	    	query.setParameterList("partOf", partOf);
512
		    return ((Long)query.uniqueResult()).intValue();
513
		} else {
514
			Integer count = 0;
515
			for(T t : partOf) {
516
				AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(DefinedTermBase.class,auditEvent.getRevisionNumber());
517
				query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
518
			    query.addProjection(AuditEntity.id().count());
519
			    count += ((Long)query.getSingleResult()).intValue();
520
			}
521
			return count;
522
		}
523
	}
524

    
525
	@Override
526
    public <T extends DefinedTermBase> List<T> getGeneralizationOf(T kindOf, Integer pageSize, Integer pageNumber) {
527
		AuditEvent auditEvent = getAuditEventFromContext();
528
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
529
		    Query query = getSession().createQuery("select term from DefinedTermBase term where term.kindOf = :kindOf");
530
		    query.setParameter("kindOf", kindOf);
531

    
532
		    if(pageSize != null) {
533
			    query.setMaxResults(pageSize);
534
		        if(pageNumber != null) {
535
		    	    query.setFirstResult(pageNumber * pageSize);
536
		        }
537
		    }
538

    
539
	        return query.list();
540
		} else {
541
			 AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(DefinedTermBase.class,auditEvent.getRevisionNumber());
542
			 query.add(AuditEntity.relatedId("kindOf").eq(kindOf.getId()));
543

    
544
			 if(pageSize != null) {
545
			    query.setMaxResults(pageSize);
546
			     if(pageNumber != null) {
547
			  	    query.setFirstResult(pageNumber * pageSize);
548
			     }
549
			 }
550

    
551
			 return query.getResultList();
552
		}
553
	}
554

    
555
	@Override
556
    public <T extends DefinedTermBase> List<T> getIncludes(Collection<T> partOf,	Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
557
		if (partOf == null || partOf.isEmpty()){
558
			return new ArrayList<T>();
559
		}
560
		AuditEvent auditEvent = getAuditEventFromContext();
561
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
562
    		Query query = getSession().createQuery("select term from DefinedTermBase term where term.partOf in (:partOf)");
563
    		query.setParameterList("partOf", partOf);
564

    
565
		    if(pageSize != null) {
566
			    query.setMaxResults(pageSize);
567
		        if(pageNumber != null) {
568
		    	    query.setFirstResult(pageNumber * pageSize);
569
		        }
570
		    }
571

    
572
		    @SuppressWarnings("unchecked")
573
            List<T> results = query.list();
574
		    defaultBeanInitializer.initializeAll(results, propertyPaths);
575
		    return results;
576
		} else {
577
			List<T> result = new ArrayList<T>();
578
			for(T t : partOf) {
579
				AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(DefinedTermBase.class,auditEvent.getRevisionNumber());
580
				query.add(AuditEntity.relatedId("partOf").eq(t.getId()));
581
				if(pageSize != null) {
582
				    query.setMaxResults(pageSize);
583
			        if(pageNumber != null) {
584
			    	    query.setFirstResult(pageNumber * pageSize);
585
			        }
586
			    }
587

    
588
			    result.addAll(query.getResultList());
589
			}
590
			defaultBeanInitializer.initializeAll(result, propertyPaths);
591
			return result;
592
		}
593
	}
594

    
595
	@Override
596
    public <T extends DefinedTermBase> int countPartOf(Set<T> definedTerms) {
597
		checkNotInPriorView("DefinedTermDaoImpl.countPartOf(Set<T> definedTerms)");
598
		Query query = getSession().createQuery("select count(distinct definedTerm) from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
599
		query.setParameterList("definedTerms", definedTerms);
600
		return ((Long)query.uniqueResult()).intValue();
601
	}
602

    
603
	@Override
604
    public <T extends DefinedTermBase> List<T> getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
605
		checkNotInPriorView("DefinedTermDaoImpl.getPartOf(Set<T> definedTerms, Integer pageSize, Integer pageNumber)");
606
		Query query = getSession().createQuery("select distinct definedTerm from DefinedTermBase definedTerm join definedTerm.includes included where included in (:definedTerms)");
607
		query.setParameterList("definedTerms", definedTerms);
608

    
609
		if(pageSize != null) {
610
			query.setMaxResults(pageSize);
611
		    if(pageNumber != null) {
612
		    	query.setFirstResult(pageNumber * pageSize);
613
		    }
614
		}
615
		@SuppressWarnings("unchecked")
616
        List<T> r = query.list();
617
		/**
618
		 * For some weird reason, hibernate returns proxies (extending the superclass), not the actual class on this,
619
		 * despite querying the damn database and returning the discriminator along with the rest of the object properties!
620
		 *
621
		 * Probably a bug in hibernate, but we'll manually deproxy for now since the objects are initialized anyway, the
622
		 * performance implications are small (we're swapping one array of references for another, not hitting the db or
623
		 * cache).
624
		 */
625
		List<T> results = new ArrayList<T>();
626
		if(!definedTerms.isEmpty()) {
627
		    for(T t : r) {
628
		        T deproxied = CdmBase.deproxy(t);
629
                results.add(deproxied);
630
		    }
631
		    defaultBeanInitializer.initializeAll(results, propertyPaths);
632
		}
633
		return results;
634
	}
635

    
636
	@Override
637
    public DefinedTermBase findByUri(URI uri) {
638
		AuditEvent auditEvent = getAuditEventFromContext();
639
		if(auditEvent.equals(AuditEvent.CURRENT_VIEW)) {
640
		    Query query = getSession().createQuery("select term from DefinedTermBase term where term.uri = :uri");
641
		    query.setParameter("uri", uri);
642
		    return (DefinedTermBase<?>)query.uniqueResult();
643
		} else {
644
			AuditQuery query = getAuditReader().createQuery().forEntitiesAtRevision(DefinedTermBase.class,auditEvent.getRevisionNumber());
645
			query.add(AuditEntity.property("uri").eq(uri));
646
		    return (DefinedTermBase<?>)query.getSingleResult();
647
		}
648
	}
649

    
650
	@Override
651
	public <T extends DefinedTermBase> List<T> listByTermType(TermType termType, Integer limit, Integer start,
652
	        List<OrderHint> orderHints, List<String> propertyPaths) {
653
	    Query query = getSession().createQuery("SELECT term FROM DefinedTermBase term WHERE term.termType = :termType");
654
	    query.setParameter("termType", termType);
655

    
656
	    @SuppressWarnings("unchecked")
657
        List<T> result = query.list();
658

    
659

    
660
	    defaultBeanInitializer.initializeAll(result, propertyPaths);
661

    
662
        return result;
663
	}
664

    
665
	@Override
666
    public <TERM extends DefinedTermBase> List<TERM> listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
667
//		checkNotInPriorView("DefinedTermDaoImpl.listByTermClass(Class<TERM> clazz, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths)");
668

    
669
		Query query = getSession().createQuery("from " + clazz.getSimpleName());
670
	    //query.setParameter("DTYPE", );
671

    
672
	    @SuppressWarnings("unchecked")
673
        List<TERM> result = query.list();
674

    
675
	    defaultBeanInitializer.initializeAll(result, propertyPaths);
676

    
677
	    return result;
678
	}
679

    
680
    @Override
681
    public <S extends DefinedTermBase> List<S> list(Class<S> type, Integer limit, Integer start,
682
            List<OrderHint> orderHints, List<String> propertyPath) {
683

    
684
        return deduplicateResult(super.list(type, limit, start, orderHints, propertyPath));
685
    }
686

    
687
    /**
688
     * Workaround for http://dev.e-taxonomy.eu/trac/ticket/5871 and #5945
689
     * Terms with multiple representations return identical duplicates
690
     * due to eager representation loading. We expect these duplicates to appear
691
     * in line wo we only compare one term with its predecessor. If it already
692
     * exists we remove it from the result.
693
     * @param orginals
694
     * @return
695
     */
696
    private <S extends DefinedTermBase<?>> List<S> deduplicateResult(List<S> orginals) {
697
        List<S> result = new ArrayList<>();
698
        Iterator<S> it = orginals.iterator();
699
        S last = null;
700
        while (it.hasNext()){
701
            S a = it.next();
702
            if (a != last){
703
                if (!result.contains(a)){
704
                    result.add(a);
705
                }
706
            }
707
            last = a;
708
        }
709
        return result;
710
    }
711

    
712
}
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