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/**
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Andreas Müller
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* Copyright (C) 2007 EDIT
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Andreas Müller
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* European Distributed Institute of Taxonomy
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h.fradin
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* http://www.e-taxonomy.eu
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Andreas Müller
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*
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Andreas Müller
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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h.fradin
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*/
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package eu.etaxonomy.cdm.io.sdd.out;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlElement;
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import javax.xml.bind.annotation.XmlElementWrapper;
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import javax.xml.bind.annotation.XmlElements;
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import javax.xml.bind.annotation.XmlRootElement;
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import javax.xml.bind.annotation.XmlType;
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import eu.etaxonomy.cdm.model.agent.Address;
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import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.Contact;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.DefinedTerm;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.common.LanguageStringBase;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.ReferencedEntityBase;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.Representation;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.common.VersionableEntity;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.FeatureNode;
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import eu.etaxonomy.cdm.model.description.FeatureTree;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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import eu.etaxonomy.cdm.model.media.RightsType;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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import eu.etaxonomy.cdm.model.name.HybridRelationship;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationship;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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/**
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* @author a.babadshanjan
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*/
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@XmlAccessorType(XmlAccessType.FIELD)
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@XmlType(name = "", propOrder = {
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"terms",
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"termVocabularies",
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"agents",
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"agentData",
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"occurrences",
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"references",
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"referencedEntities",
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"featureData",
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"languageData",
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"taxonomicNames",
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"homotypicalGroups",
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"taxa",
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"synonyms",
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"relationships",
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"media"
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})
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@XmlRootElement(name = "DataSet", namespace = "http://etaxonomy.eu/cdm/model/1.0")
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public class SDDDataSet {
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// Some fields are of type List and some are of type Set.
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// This is mainly because
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// the service classes return lists, i.e.
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// TaxonServiceImpl.getRootTaxa() returns List<Taxon>
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// and the Taxon methods return sets, i.e.
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// Taxon.getTaxonomicChildren() returns Set<Taxon>.
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@XmlElementWrapper(name = "Agents")
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@XmlElements({
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@XmlElement(name = "Team", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Team.class),
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@XmlElement(name = "Institution", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Institution.class),
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@XmlElement(name = "Person", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Person.class)
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})
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protected List<? extends AgentBase> agents;
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@XmlElementWrapper(name = "AgentData")
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@XmlElements({
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@XmlElement(name = "Address", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Address.class),
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@XmlElement(name = "Contact", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Contact.class),
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@XmlElement(name = "InstitutionalMembership", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = InstitutionalMembership.class)
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})
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protected List<VersionableEntity> agentData;
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@XmlElementWrapper(name = "FeatureData")
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@XmlElements({
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@XmlElement(name = "FeatureNode", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = FeatureNode.class),
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@XmlElement(name = "FeatureTree", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = FeatureTree.class)
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})
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// protected List<VersionableEntity> featureData;
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protected List<VersionableEntity> featureData;
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@XmlElementWrapper(name = "LanguageData")
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@XmlElements({
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@XmlElement(name = "Representation", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = Representation.class),
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@XmlElement(name = "LanguageString", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = LanguageString.class)
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})
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protected List<LanguageStringBase> languageData;
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@XmlElementWrapper(name = "Terms")
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@XmlElements({
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@XmlElement(name = "AnnotationType", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = AnnotationType.class),
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@XmlElement(name = "Continent", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = NamedArea.class),
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@XmlElement(name = "DerivationEventType", namespace = "http://etaxonomy.eu/cdm/model/occurrence/1.0", type = DerivationEventType.class),
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@XmlElement(name = "DeterminationModifier", namespace = "http://etaxonomy.eu/cdm/model/occurrence/1.0", type = DefinedTerm.class),
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@XmlElement(name = "ExtensionType", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = ExtensionType.class),
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@XmlElement(name = "Feature", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = Feature.class),
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@XmlElement(name = "HybridRelationshipType", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = HybridRelationshipType.class),
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@XmlElement(name = "InstitutionType", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = DefinedTerm.class),
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@XmlElement(name = "Language", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = Language.class),
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@XmlElement(name = "MarkerType", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = MarkerType.class),
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@XmlElement(name = "MeasurementUnit", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = MeasurementUnit.class),
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@XmlElement(name = "Modifier", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = DefinedTerm.class),
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@XmlElement(name = "NamedArea", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = NamedArea.class),
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@XmlElement(name = "NamedAreaLevel", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = NamedAreaLevel.class),
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@XmlElement(name = "NamedAreaType", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = NamedAreaType.class),
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@XmlElement(name = "NameRelationshipType", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NameRelationshipType.class),
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@XmlElement(name = "NomenclaturalCode", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NomenclaturalCode.class),
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@XmlElement(name = "NomenclaturalStatusType", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NomenclaturalStatusType.class),
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ccf1f2f1
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@XmlElement(name = "PresenceAbsenceTerm", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = PresenceAbsenceTerm.class),
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@XmlElement(name = "PreservationMethod", namespace = "http://etaxonomy.eu/cdm/model/occurrence/1.0", type = PreservationMethod.class),
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@XmlElement(name = "Rank", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = Rank.class),
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@XmlElement(name = "ReferenceSystem", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = ReferenceSystem.class),
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@XmlElement(name = "RightsType", namespace = "http://etaxonomy.eu/cdm/model/media/1.0", type = RightsType.class),
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@XmlElement(name = "Scope", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = DefinedTerm.class),
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@XmlElement(name = "Sex", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = DefinedTerm.class),
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@XmlElement(name = "Stage", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = DefinedTerm.class),
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@XmlElement(name = "State", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = State.class),
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@XmlElement(name = "StatisticalMeasure", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = StatisticalMeasure.class),
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@XmlElement(name = "SynonymType", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = SynonymType.class),
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@XmlElement(name = "TaxonRelationshipType", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = TaxonRelationshipType.class),
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@XmlElement(name = "TextFormat", namespace = "http://etaxonomy.eu/cdm/model/description/1.0", type = TextFormat.class),
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@XmlElement(name = "TypeDesignationStatus", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = SpecimenTypeDesignationStatus.class),
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@XmlElement(name = "Country", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = Country.class)
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})
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protected List<DefinedTermBase> terms;
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@XmlElementWrapper(name = "TermVocabularies")
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@XmlElement(name = "TermVocabulary", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
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protected List<TermVocabulary<DefinedTermBase>> termVocabularies;
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@XmlElementWrapper(name = "Occurrences")
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@XmlElements({
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@XmlElement(name = "DnaSample", namespace = "http://etaxonomy.eu/cdm/model/occurrence/1.0", type = DnaSample.class),
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@XmlElement(name = "FieldUnit", namespace = "http://etaxonomy.eu/cdm/model/occurrence/1.0", type = FieldUnit.class)
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})
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protected List<SpecimenOrObservationBase> occurrences;
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@XmlElementWrapper(name = "References")
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@XmlElement(name = "Reference", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Reference.class)
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protected List<Reference> references;
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@XmlElementWrapper(name = "ReferencedEntities")
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@XmlElements({
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@XmlElement(name = "NomenclaturalStatus", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NomenclaturalStatus.class),
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@XmlElement(name = "NameTypeDesignation", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NameTypeDesignation.class),
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@XmlElement(name = "SpecimenTypeDesignation", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = SpecimenTypeDesignation.class)
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})
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protected List<ReferencedEntityBase> referencedEntities;
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@XmlElementWrapper(name = "TaxonomicNames")
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@XmlElements({
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@XmlElement(name = "TaxonNameBase", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = TaxonNameBase.class),
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})
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protected List<TaxonNameBase> taxonomicNames;
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@XmlElementWrapper(name = "Taxa")
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@XmlElement(name = "Taxon", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")
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protected List<Taxon> taxa;
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|
| 221 |
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@XmlElementWrapper(name = "Synonyms")
|
| 222 |
|
|
@XmlElement(name = "Synonym", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")
|
| 223 |
|
|
protected List<Synonym> synonyms;
|
| 224 |
|
|
|
| 225 |
|
|
@XmlElementWrapper(name = "Relationships")
|
| 226 |
|
|
@XmlElements({
|
| 227 |
|
|
@XmlElement(name = "TaxonRelationship", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = TaxonRelationship.class),
|
| 228 |
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|
@XmlElement(name = "NameRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NameRelationship.class),
|
| 229 |
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@XmlElement(name = "HybridRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = HybridRelationship.class)
|
| 230 |
|
|
})
|
| 231 |
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protected Set<RelationshipBase> relationshipsX;
|
| 232 |
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|
| 233 |
|
|
@XmlElementWrapper(name = "Media_")
|
| 234 |
|
|
@XmlElement(name = "Media", namespace = "http://etaxonomy.eu/cdm/model/media/1.0")
|
| 235 |
|
|
protected List<VersionableEntity> media;
|
| 236 |
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|
| 237 |
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@XmlElementWrapper(name = "HomotypicalGroups")
|
| 238 |
|
|
@XmlElement(name = "HomotypicalGroup", namespace = "http://etaxonomy.eu/cdm/model/name/1.0")
|
| 239 |
|
|
protected List<HomotypicalGroup> homotypicalGroups;
|
| 240 |
|
|
|
| 241 |
|
|
// @XmlElement(name = "TdwgArea", namespace = "http://etaxonomy.eu/cdm/model/location/1.0", type = TdwgArea.class),
|
| 242 |
|
|
|
| 243 |
|
|
public SDDDataSet () {
|
| 244 |
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|
| 245 |
|
|
agents = new ArrayList<>();
|
| 246 |
|
|
agentData = new ArrayList<>();
|
| 247 |
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// featureData = new ArrayList<VersionableEntity>();
|
| 248 |
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|
featureData = new ArrayList<>();
|
| 249 |
|
|
languageData = new ArrayList<>();
|
| 250 |
|
|
terms = new ArrayList<>();
|
| 251 |
|
|
termVocabularies = new ArrayList<>();
|
| 252 |
|
|
occurrences = new ArrayList<>();
|
| 253 |
|
|
references = new ArrayList<>();
|
| 254 |
|
|
referencedEntities = new ArrayList<>();
|
| 255 |
|
|
taxonomicNames = new ArrayList<>();
|
| 256 |
|
|
taxa = new ArrayList<>();
|
| 257 |
|
|
synonyms = new ArrayList<>();
|
| 258 |
|
|
media = new ArrayList<>();
|
| 259 |
|
|
homotypicalGroups = new ArrayList<>();
|
| 260 |
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}
|
| 261 |
|
|
|
| 262 |
|
|
/**
|
| 263 |
|
|
* Gets the value of the agents property.
|
| 264 |
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|
*
|
| 265 |
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* @return
|
| 266 |
|
|
* possible object is
|
| 267 |
|
|
* {@link List<Agent> }
|
| 268 |
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|
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|
*
|
| 269 |
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|
*/
|
| 270 |
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|
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public List<? extends AgentBase> getAgents() {
|
| 271 |
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|
return agents;
|
| 272 |
|
|
}
|
| 273 |
|
|
|
| 274 |
|
|
/**
|
| 275 |
|
|
* Sets the value of the agents property.
|
| 276 |
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|
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|
*
|
| 277 |
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|
* @param value
|
| 278 |
|
|
* allowed object is
|
| 279 |
|
|
* {@link List<Agent> }
|
| 280 |
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|
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|
*
|
| 281 |
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|
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|
*/
|
| 282 |
08b9a163
|
ben.clark
|
public void setAgents(List<? extends AgentBase> value) {
|
| 283 |
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|
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|
this.agents = value;
|
| 284 |
|
|
}
|
| 285 |
|
|
|
| 286 |
|
|
/**
|
| 287 |
|
|
* Gets the value of the agentData property.
|
| 288 |
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|
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|
*
|
| 289 |
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|
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|
* @return
|
| 290 |
|
|
* possible object is
|
| 291 |
|
|
* {@link List<VersionableEntity> }
|
| 292 |
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|
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|
*
|
| 293 |
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|
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|
*/
|
| 294 |
|
|
public List<VersionableEntity> getAgentData() {
|
| 295 |
|
|
return agentData;
|
| 296 |
|
|
}
|
| 297 |
|
|
|
| 298 |
|
|
/**
|
| 299 |
|
|
* Sets the value of the agentData property.
|
| 300 |
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|
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|
*
|
| 301 |
0451b182
|
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|
* @param value
|
| 302 |
|
|
* allowed object is
|
| 303 |
|
|
* {@link List<VersionableEntity> }
|
| 304 |
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|
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|
*
|
| 305 |
0451b182
|
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|
*/
|
| 306 |
|
|
public void setAgentData(List<VersionableEntity> value) {
|
| 307 |
|
|
this.agentData = value;
|
| 308 |
|
|
}
|
| 309 |
|
|
|
| 310 |
|
|
/**
|
| 311 |
|
|
* Gets the value of the terms property.
|
| 312 |
f476ff86
|
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|
*
|
| 313 |
0451b182
|
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|
* @return
|
| 314 |
|
|
* possible object is
|
| 315 |
|
|
* {@link List<TermBase> }
|
| 316 |
f476ff86
|
Andreas Müller
|
*
|
| 317 |
0451b182
|
h.fradin
|
*/
|
| 318 |
f476ff86
|
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|
|
| 319 |
0451b182
|
h.fradin
|
//public List<? extends TermBase> getTerms() {
|
| 320 |
|
|
public List<DefinedTermBase> getTerms() {
|
| 321 |
|
|
return terms;
|
| 322 |
|
|
}
|
| 323 |
|
|
|
| 324 |
|
|
/**
|
| 325 |
|
|
* Sets the value of the terms property.
|
| 326 |
f476ff86
|
Andreas Müller
|
*
|
| 327 |
0451b182
|
h.fradin
|
* @param value
|
| 328 |
|
|
* allowed object is
|
| 329 |
|
|
* {@link List<TermBase> }
|
| 330 |
f476ff86
|
Andreas Müller
|
*
|
| 331 |
0451b182
|
h.fradin
|
*/
|
| 332 |
|
|
//public void setTerms(List<? extends TermBase> value) {
|
| 333 |
|
|
public void setTerms(List<DefinedTermBase> value) {
|
| 334 |
|
|
this.terms = value;
|
| 335 |
|
|
}
|
| 336 |
|
|
|
| 337 |
|
|
/**
|
| 338 |
|
|
* Gets the value of the term vocabularies property.
|
| 339 |
f476ff86
|
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|
*
|
| 340 |
0451b182
|
h.fradin
|
* @return
|
| 341 |
|
|
* possible object is
|
| 342 |
|
|
* {@link List<TermVocabulary> }
|
| 343 |
f476ff86
|
Andreas Müller
|
*
|
| 344 |
0451b182
|
h.fradin
|
*/
|
| 345 |
f476ff86
|
Andreas Müller
|
|
| 346 |
0451b182
|
h.fradin
|
public List<TermVocabulary<DefinedTermBase>> getTermVocabularies() {
|
| 347 |
|
|
return termVocabularies;
|
| 348 |
|
|
}
|
| 349 |
|
|
|
| 350 |
|
|
/**
|
| 351 |
|
|
* Sets the value of the term vocabularies property.
|
| 352 |
f476ff86
|
Andreas Müller
|
*
|
| 353 |
0451b182
|
h.fradin
|
* @param value
|
| 354 |
|
|
* allowed object is
|
| 355 |
|
|
* {@link List<TermVocabulary> }
|
| 356 |
f476ff86
|
Andreas Müller
|
*
|
| 357 |
0451b182
|
h.fradin
|
*/
|
| 358 |
|
|
public void setTermVocabularies(List<TermVocabulary<DefinedTermBase>> value) {
|
| 359 |
|
|
this.termVocabularies = value;
|
| 360 |
|
|
}
|
| 361 |
|
|
|
| 362 |
|
|
/**
|
| 363 |
|
|
* Gets the value of the taxonomicNames property.
|
| 364 |
f476ff86
|
Andreas Müller
|
*
|
| 365 |
0451b182
|
h.fradin
|
* @return
|
| 366 |
|
|
* possible object is
|
| 367 |
|
|
* {@link List<axonNameBase> }
|
| 368 |
f476ff86
|
Andreas Müller
|
*
|
| 369 |
0451b182
|
h.fradin
|
*/
|
| 370 |
|
|
public List<TaxonNameBase> getTaxonomicNames() {
|
| 371 |
|
|
return taxonomicNames;
|
| 372 |
|
|
}
|
| 373 |
|
|
|
| 374 |
|
|
/**
|
| 375 |
|
|
* Sets the value of the taxonomicNames property.
|
| 376 |
f476ff86
|
Andreas Müller
|
*
|
| 377 |
0451b182
|
h.fradin
|
* @param value
|
| 378 |
|
|
* allowed object is
|
| 379 |
|
|
* {@link List<TaxonNameBase> }
|
| 380 |
f476ff86
|
Andreas Müller
|
*
|
| 381 |
0451b182
|
h.fradin
|
*/
|
| 382 |
|
|
public void setTaxonomicNames(List<TaxonNameBase> value) {
|
| 383 |
|
|
this.taxonomicNames = value;
|
| 384 |
|
|
}
|
| 385 |
|
|
|
| 386 |
|
|
/**
|
| 387 |
|
|
* Gets the value of the references property.
|
| 388 |
f476ff86
|
Andreas Müller
|
*
|
| 389 |
0451b182
|
h.fradin
|
* @return
|
| 390 |
|
|
* possible object is
|
| 391 |
|
|
* {@link List<SpecimenOrObservationBase> }
|
| 392 |
f476ff86
|
Andreas Müller
|
*
|
| 393 |
0451b182
|
h.fradin
|
*/
|
| 394 |
|
|
public List<SpecimenOrObservationBase> getOccurrences() {
|
| 395 |
|
|
return occurrences;
|
| 396 |
|
|
}
|
| 397 |
|
|
|
| 398 |
|
|
/**
|
| 399 |
|
|
* Sets the value of the references property.
|
| 400 |
f476ff86
|
Andreas Müller
|
*
|
| 401 |
0451b182
|
h.fradin
|
* @param value
|
| 402 |
|
|
* allowed object is
|
| 403 |
|
|
* {@link List<SpecimenOrObservationBase> }
|
| 404 |
f476ff86
|
Andreas Müller
|
*
|
| 405 |
0451b182
|
h.fradin
|
*/
|
| 406 |
|
|
public void setOccurrences(List<SpecimenOrObservationBase> value) {
|
| 407 |
|
|
this.occurrences = value;
|
| 408 |
|
|
}
|
| 409 |
|
|
|
| 410 |
|
|
/**
|
| 411 |
|
|
* Gets the value of the references property.
|
| 412 |
f476ff86
|
Andreas Müller
|
*
|
| 413 |
0451b182
|
h.fradin
|
* @return
|
| 414 |
|
|
* possible object is
|
| 415 |
1d36aa54
|
Andreas Müller
|
* {@link List<Reference> }
|
| 416 |
f476ff86
|
Andreas Müller
|
*
|
| 417 |
0451b182
|
h.fradin
|
*/
|
| 418 |
1d36aa54
|
Andreas Müller
|
public List<Reference> getReferences() {
|
| 419 |
0451b182
|
h.fradin
|
return references;
|
| 420 |
|
|
}
|
| 421 |
|
|
|
| 422 |
|
|
/**
|
| 423 |
|
|
* Sets the value of the references property.
|
| 424 |
f476ff86
|
Andreas Müller
|
*
|
| 425 |
0451b182
|
h.fradin
|
* @param value
|
| 426 |
|
|
* allowed object is
|
| 427 |
1d36aa54
|
Andreas Müller
|
* {@link List<Reference> }
|
| 428 |
f476ff86
|
Andreas Müller
|
*
|
| 429 |
0451b182
|
h.fradin
|
*/
|
| 430 |
1d36aa54
|
Andreas Müller
|
public void setReferences(List<Reference> value) {
|
| 431 |
0451b182
|
h.fradin
|
this.references = value;
|
| 432 |
|
|
}
|
| 433 |
|
|
|
| 434 |
|
|
/**
|
| 435 |
|
|
* Adds the referenced entities in value to the referenced entity property list.
|
| 436 |
f476ff86
|
Andreas Müller
|
*
|
| 437 |
0451b182
|
h.fradin
|
* @param value
|
| 438 |
|
|
* allowed object is
|
| 439 |
|
|
* {@link Collection<ReferencedEntityBase> }
|
| 440 |
f476ff86
|
Andreas Müller
|
*
|
| 441 |
0451b182
|
h.fradin
|
*/
|
| 442 |
|
|
public <T extends ReferencedEntityBase> void addReferencedEntities(Collection<T> value) {
|
| 443 |
|
|
for (T referencedEntity: value) {
|
| 444 |
|
|
this.referencedEntities.add(referencedEntity);
|
| 445 |
|
|
}
|
| 446 |
|
|
}
|
| 447 |
|
|
|
| 448 |
|
|
/**
|
| 449 |
|
|
* Gets the value of the property.
|
| 450 |
f476ff86
|
Andreas Müller
|
*
|
| 451 |
0451b182
|
h.fradin
|
* @return
|
| 452 |
|
|
* possible object is
|
| 453 |
|
|
* {@link List<ReferencedEntityBase> }
|
| 454 |
f476ff86
|
Andreas Müller
|
*
|
| 455 |
0451b182
|
h.fradin
|
*/
|
| 456 |
|
|
public List<ReferencedEntityBase> getReferencedEntities() {
|
| 457 |
|
|
return referencedEntities;
|
| 458 |
|
|
}
|
| 459 |
|
|
|
| 460 |
|
|
/**
|
| 461 |
|
|
* Sets the value of the referencedEntities property.
|
| 462 |
f476ff86
|
Andreas Müller
|
*
|
| 463 |
0451b182
|
h.fradin
|
* @param value
|
| 464 |
|
|
* allowed object is
|
| 465 |
|
|
* {@link List<ReferencedEntityBase> }
|
| 466 |
f476ff86
|
Andreas Müller
|
*
|
| 467 |
0451b182
|
h.fradin
|
*/
|
| 468 |
|
|
public void setReferencedEntities(List<? extends ReferencedEntityBase> value) {
|
| 469 |
|
|
this.referencedEntities = new ArrayList<ReferencedEntityBase>();
|
| 470 |
|
|
referencedEntities.addAll(value);
|
| 471 |
|
|
}
|
| 472 |
f476ff86
|
Andreas Müller
|
|
| 473 |
0451b182
|
h.fradin
|
/**
|
| 474 |
|
|
* Adds the features in value to the feature data property list.
|
| 475 |
f476ff86
|
Andreas Müller
|
*
|
| 476 |
0451b182
|
h.fradin
|
* @param value
|
| 477 |
|
|
* allowed object is
|
| 478 |
|
|
* {@link Collection<VersionableEntity> }
|
| 479 |
f476ff86
|
Andreas Müller
|
*
|
| 480 |
0451b182
|
h.fradin
|
*/
|
| 481 |
|
|
public <T extends VersionableEntity> void addFeatureData(Collection<T> value) {
|
| 482 |
|
|
for (T featureItem: value) {
|
| 483 |
|
|
this.featureData.add(featureItem);
|
| 484 |
|
|
}
|
| 485 |
|
|
}
|
| 486 |
|
|
|
| 487 |
|
|
/**
|
| 488 |
|
|
* Gets the value of the feature data property.
|
| 489 |
f476ff86
|
Andreas Müller
|
*
|
| 490 |
0451b182
|
h.fradin
|
* @return
|
| 491 |
|
|
* possible object is
|
| 492 |
|
|
* {@link List<VersionableEntity> }
|
| 493 |
f476ff86
|
Andreas Müller
|
*
|
| 494 |
0451b182
|
h.fradin
|
*/
|
| 495 |
|
|
// public List<VersionableEntity> getFeatureData() {
|
| 496 |
d37cd796
|
ben.clark
|
public List<VersionableEntity> getFeatureData() {
|
| 497 |
0451b182
|
h.fradin
|
return featureData;
|
| 498 |
|
|
}
|
| 499 |
|
|
|
| 500 |
|
|
/**
|
| 501 |
|
|
* Sets the value of the feature data property.
|
| 502 |
f476ff86
|
Andreas Müller
|
*
|
| 503 |
0451b182
|
h.fradin
|
* @param value
|
| 504 |
|
|
* allowed object is
|
| 505 |
|
|
* {@link List<VersionableEntity> }
|
| 506 |
f476ff86
|
Andreas Müller
|
*
|
| 507 |
0451b182
|
h.fradin
|
*/
|
| 508 |
|
|
public <T extends VersionableEntity> void setFeatureData(List<T> value) {
|
| 509 |
d37cd796
|
ben.clark
|
featureData = new ArrayList<VersionableEntity>();
|
| 510 |
0451b182
|
h.fradin
|
for (T featureItem: value) {
|
| 511 |
|
|
this.featureData.add(featureItem);
|
| 512 |
|
|
}
|
| 513 |
|
|
}
|
| 514 |
|
|
|
| 515 |
|
|
// public void setFeatureData(List<? extends VersionableEntity> value) {
|
| 516 |
|
|
//public void setFeatureData(List<? extends VersionableEntity<?>> value) {
|
| 517 |
|
|
// this.featureData = new ArrayList<VersionableEntity>();
|
| 518 |
|
|
// this.featureData = new ArrayList<VersionableEntity<?>>();
|
| 519 |
|
|
// featureData.addAll(value);
|
| 520 |
|
|
//}
|
| 521 |
f476ff86
|
Andreas Müller
|
|
| 522 |
0451b182
|
h.fradin
|
/**
|
| 523 |
|
|
* Adds the features in value to the language data property list.
|
| 524 |
f476ff86
|
Andreas Müller
|
*
|
| 525 |
0451b182
|
h.fradin
|
* @param value
|
| 526 |
|
|
* allowed object is
|
| 527 |
|
|
* {@link Collection<LanguageStringBase> }
|
| 528 |
f476ff86
|
Andreas Müller
|
*
|
| 529 |
0451b182
|
h.fradin
|
*/
|
| 530 |
|
|
public <T extends LanguageStringBase> void addLanguageData(Collection<T> value) {
|
| 531 |
|
|
for (T languageItem: value) {
|
| 532 |
|
|
this.languageData.add(languageItem);
|
| 533 |
|
|
}
|
| 534 |
|
|
}
|
| 535 |
|
|
|
| 536 |
|
|
/**
|
| 537 |
|
|
* Gets the value of the language data property.
|
| 538 |
f476ff86
|
Andreas Müller
|
*
|
| 539 |
0451b182
|
h.fradin
|
* @return
|
| 540 |
|
|
* possible object is
|
| 541 |
|
|
* {@link List<LanguageStringBase> }
|
| 542 |
f476ff86
|
Andreas Müller
|
*
|
| 543 |
0451b182
|
h.fradin
|
*/
|
| 544 |
|
|
public List<LanguageStringBase> getLanguageData() {
|
| 545 |
|
|
return languageData;
|
| 546 |
|
|
}
|
| 547 |
|
|
|
| 548 |
|
|
/**
|
| 549 |
|
|
* Sets the value of the feature data property.
|
| 550 |
f476ff86
|
Andreas Müller
|
*
|
| 551 |
0451b182
|
h.fradin
|
* @param value
|
| 552 |
|
|
* allowed object is
|
| 553 |
|
|
* {@link List<LanguageStringBase> }
|
| 554 |
f476ff86
|
Andreas Müller
|
*
|
| 555 |
0451b182
|
h.fradin
|
*/
|
| 556 |
|
|
public void setLanguageData(List<? extends LanguageStringBase> value) {
|
| 557 |
|
|
this.languageData = new ArrayList<LanguageStringBase>();
|
| 558 |
|
|
languageData.addAll(value);
|
| 559 |
|
|
}
|
| 560 |
f476ff86
|
Andreas Müller
|
|
| 561 |
0451b182
|
h.fradin
|
/**
|
| 562 |
|
|
* Adds the taxa in value to the taxa property list.
|
| 563 |
f476ff86
|
Andreas Müller
|
*
|
| 564 |
0451b182
|
h.fradin
|
* @param value
|
| 565 |
|
|
* allowed object is
|
| 566 |
|
|
* {@link Collection<Taxon> }
|
| 567 |
f476ff86
|
Andreas Müller
|
*
|
| 568 |
0451b182
|
h.fradin
|
*/
|
| 569 |
|
|
public void addTaxa(Collection<Taxon> value) {
|
| 570 |
|
|
for (Taxon taxon: value) {
|
| 571 |
|
|
this.taxa.add(taxon);
|
| 572 |
|
|
}
|
| 573 |
|
|
}
|
| 574 |
|
|
|
| 575 |
|
|
/**
|
| 576 |
|
|
* Gets the value of the taxa property.
|
| 577 |
f476ff86
|
Andreas Müller
|
*
|
| 578 |
0451b182
|
h.fradin
|
* @return
|
| 579 |
|
|
* possible object is
|
| 580 |
|
|
* {@link List<Taxon> }
|
| 581 |
f476ff86
|
Andreas Müller
|
*
|
| 582 |
0451b182
|
h.fradin
|
*/
|
| 583 |
|
|
// public List<Taxon> getTaxa() {
|
| 584 |
|
|
// return taxa;
|
| 585 |
|
|
// }
|
| 586 |
|
|
|
| 587 |
|
|
/**
|
| 588 |
|
|
* Gets the value of the taxa property as {@link Collection<TaxonBase> }
|
| 589 |
f476ff86
|
Andreas Müller
|
*
|
| 590 |
0451b182
|
h.fradin
|
* @return
|
| 591 |
|
|
* possible object is
|
| 592 |
|
|
* {@link Collection<TaxonBase> }
|
| 593 |
f476ff86
|
Andreas Müller
|
*
|
| 594 |
0451b182
|
h.fradin
|
*/
|
| 595 |
|
|
public Collection<? extends TaxonBase> getTaxa() {
|
| 596 |
f476ff86
|
Andreas Müller
|
|
| 597 |
0451b182
|
h.fradin
|
//TODO can be deleted when everything works
|
| 598 |
|
|
//Object obj = taxa;
|
| 599 |
|
|
//Collection<TaxonBase> taxonBases = (Collection<TaxonBase>)obj;
|
| 600 |
|
|
List<Taxon> list = taxa;
|
| 601 |
|
|
return list;
|
| 602 |
|
|
}
|
| 603 |
|
|
|
| 604 |
|
|
public Collection<TaxonBase> getTaxonBases() {
|
| 605 |
f476ff86
|
Andreas Müller
|
|
| 606 |
0451b182
|
h.fradin
|
Collection<TaxonBase> result = new HashSet<TaxonBase>();;
|
| 607 |
|
|
if (taxa != null) {
|
| 608 |
|
|
result.addAll(taxa);
|
| 609 |
|
|
}
|
| 610 |
|
|
if (synonyms != null) {
|
| 611 |
|
|
result.addAll(synonyms);
|
| 612 |
|
|
}
|
| 613 |
|
|
return result;
|
| 614 |
|
|
}
|
| 615 |
|
|
|
| 616 |
|
|
/**
|
| 617 |
|
|
* Sets the value of the taxa property.
|
| 618 |
f476ff86
|
Andreas Müller
|
*
|
| 619 |
0451b182
|
h.fradin
|
* @param value
|
| 620 |
|
|
* allowed object is
|
| 621 |
|
|
* {@link List<Taxon> }
|
| 622 |
f476ff86
|
Andreas Müller
|
*
|
| 623 |
0451b182
|
h.fradin
|
*/
|
| 624 |
|
|
public void setTaxa(List<Taxon> value) {
|
| 625 |
|
|
this.taxa = value;
|
| 626 |
|
|
}
|
| 627 |
|
|
|
| 628 |
|
|
/**
|
| 629 |
|
|
* Adds the taxon in value to the taxa property list.
|
| 630 |
f476ff86
|
Andreas Müller
|
*
|
| 631 |
0451b182
|
h.fradin
|
* @param value
|
| 632 |
f476ff86
|
Andreas Müller
|
*
|
| 633 |
0451b182
|
h.fradin
|
*/
|
| 634 |
|
|
public void addTaxon(Taxon value) {
|
| 635 |
|
|
this.taxa.add(value);
|
| 636 |
|
|
}
|
| 637 |
|
|
|
| 638 |
|
|
|
| 639 |
|
|
/**
|
| 640 |
|
|
* Gets the value of the synonyms property.
|
| 641 |
f476ff86
|
Andreas Müller
|
*
|
| 642 |
0451b182
|
h.fradin
|
* @return
|
| 643 |
|
|
* possible object is
|
| 644 |
|
|
* {@link List<Synonym> }
|
| 645 |
f476ff86
|
Andreas Müller
|
*
|
| 646 |
0451b182
|
h.fradin
|
*/
|
| 647 |
|
|
public List<Synonym> getSynonyms() {
|
| 648 |
|
|
return synonyms;
|
| 649 |
|
|
}
|
| 650 |
|
|
|
| 651 |
|
|
/**
|
| 652 |
|
|
* Sets the value of the synonyms property.
|
| 653 |
f476ff86
|
Andreas Müller
|
*
|
| 654 |
0451b182
|
h.fradin
|
* @param value
|
| 655 |
|
|
* allowed object is
|
| 656 |
|
|
* {@link List<Synonym> }
|
| 657 |
f476ff86
|
Andreas Müller
|
*
|
| 658 |
0451b182
|
h.fradin
|
*/
|
| 659 |
|
|
public void setSynonyms(List<Synonym> value) {
|
| 660 |
|
|
this.synonyms = value;
|
| 661 |
|
|
}
|
| 662 |
f476ff86
|
Andreas Müller
|
|
| 663 |
0451b182
|
h.fradin
|
/**
|
| 664 |
|
|
* Adds the synonym in value to the taxa property list.
|
| 665 |
f476ff86
|
Andreas Müller
|
*
|
| 666 |
0451b182
|
h.fradin
|
* @param value
|
| 667 |
f476ff86
|
Andreas Müller
|
*
|
| 668 |
0451b182
|
h.fradin
|
*/
|
| 669 |
|
|
public void addSynonym(Synonym value) {
|
| 670 |
|
|
this.synonyms.add(value);
|
| 671 |
|
|
}
|
| 672 |
f476ff86
|
Andreas Müller
|
|
| 673 |
0451b182
|
h.fradin
|
/**
|
| 674 |
|
|
* Adds the synonym in value to the synonyms property list.
|
| 675 |
f476ff86
|
Andreas Müller
|
*
|
| 676 |
0451b182
|
h.fradin
|
* @param value
|
| 677 |
|
|
* allowed object is
|
| 678 |
|
|
* {@link Collection<Synonym> }
|
| 679 |
f476ff86
|
Andreas Müller
|
*
|
| 680 |
0451b182
|
h.fradin
|
*/
|
| 681 |
|
|
public void addSynonyms(Collection<Synonym> value) {
|
| 682 |
|
|
for (Synonym synonym: value) {
|
| 683 |
|
|
this.synonyms.add(synonym);
|
| 684 |
|
|
}
|
| 685 |
|
|
}
|
| 686 |
|
|
|
| 687 |
|
|
/**
|
| 688 |
|
|
* Adds the media in value to the media property list.
|
| 689 |
f476ff86
|
Andreas Müller
|
*
|
| 690 |
0451b182
|
h.fradin
|
* @param value
|
| 691 |
|
|
* allowed object is
|
| 692 |
|
|
* {@link Collection<VersionableEntity> }
|
| 693 |
f476ff86
|
Andreas Müller
|
*
|
| 694 |
0451b182
|
h.fradin
|
*/
|
| 695 |
|
|
public <T extends VersionableEntity> void addMedia(Collection<T> value) {
|
| 696 |
|
|
for (T medium: value) {
|
| 697 |
|
|
this.media.add(medium);
|
| 698 |
|
|
}
|
| 699 |
|
|
}
|
| 700 |
|
|
|
| 701 |
|
|
/**
|
| 702 |
|
|
* Gets the value of the property.
|
| 703 |
f476ff86
|
Andreas Müller
|
*
|
| 704 |
0451b182
|
h.fradin
|
* @return
|
| 705 |
|
|
* possible object is
|
| 706 |
|
|
* {@link List<ReferencedEntityBase> }
|
| 707 |
f476ff86
|
Andreas Müller
|
*
|
| 708 |
0451b182
|
h.fradin
|
*/
|
| 709 |
|
|
public List<VersionableEntity> getMedia() {
|
| 710 |
|
|
return media;
|
| 711 |
|
|
}
|
| 712 |
|
|
|
| 713 |
|
|
/**
|
| 714 |
|
|
* Sets the value of the referencedEntities property.
|
| 715 |
f476ff86
|
Andreas Müller
|
*
|
| 716 |
0451b182
|
h.fradin
|
* @param value
|
| 717 |
|
|
* allowed object is
|
| 718 |
|
|
* {@link List<ReferencedEntityBase> }
|
| 719 |
f476ff86
|
Andreas Müller
|
*
|
| 720 |
0451b182
|
h.fradin
|
*/
|
| 721 |
|
|
public void setMedia(List<? extends VersionableEntity> value) {
|
| 722 |
|
|
this.media = new ArrayList<VersionableEntity>();
|
| 723 |
|
|
media.addAll(value);
|
| 724 |
|
|
}
|
| 725 |
f476ff86
|
Andreas Müller
|
|
| 726 |
0451b182
|
h.fradin
|
/**
|
| 727 |
|
|
* Gets the value of the synonyms property.
|
| 728 |
f476ff86
|
Andreas Müller
|
*
|
| 729 |
0451b182
|
h.fradin
|
* @return
|
| 730 |
|
|
* possible object is
|
| 731 |
|
|
* {@link List<Synonym> }
|
| 732 |
f476ff86
|
Andreas Müller
|
*
|
| 733 |
0451b182
|
h.fradin
|
*/
|
| 734 |
|
|
public List<HomotypicalGroup> getHomotypicalGroups() {
|
| 735 |
|
|
return homotypicalGroups;
|
| 736 |
|
|
}
|
| 737 |
|
|
|
| 738 |
|
|
/**
|
| 739 |
|
|
* Sets the value of the synonyms property.
|
| 740 |
f476ff86
|
Andreas Müller
|
*
|
| 741 |
0451b182
|
h.fradin
|
* @param value
|
| 742 |
|
|
* allowed object is
|
| 743 |
|
|
* {@link List<Synonym> }
|
| 744 |
f476ff86
|
Andreas Müller
|
*
|
| 745 |
0451b182
|
h.fradin
|
*/
|
| 746 |
|
|
public void setHomotypicalGroups(List<HomotypicalGroup> value) {
|
| 747 |
|
|
this.homotypicalGroups = value;
|
| 748 |
|
|
}
|
| 749 |
f476ff86
|
Andreas Müller
|
|
| 750 |
0451b182
|
h.fradin
|
}
|