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package eu.etaxonomy.cdm.io.berlinModel;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Service;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.database.DataSourceNotFoundException;
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import eu.etaxonomy.cdm.io.source.Source;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.init.TermNotFoundException;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import static eu.etaxonomy.cdm.io.berlinModel.BerlinModelImportConfigurator.DO_REFERENCES.*;
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@Service
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public class BerlinModelImport {
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private static final Logger logger = Logger.getLogger(BerlinModelImport.class);
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//Constants
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//final boolean OBLIGATORY = true;
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//final boolean FACULTATIVE = false;
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final int modCount = 1000;
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//Hashmaps for Joins
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//OLD: private Map<Integer, UUID> referenceMap = new HashMap<Integer, UUID>();
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private MapWrapper<Team> authorStore= new MapWrapper<Team>(null);
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private MapWrapper<ReferenceBase> referenceStore= new MapWrapper<ReferenceBase>(null);
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private MapWrapper<TaxonNameBase> taxonNameStore = new MapWrapper<TaxonNameBase>(null);
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private MapWrapper<TaxonBase> taxonStore = new MapWrapper<TaxonBase>(null);
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/**
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* Executes the whole
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*/
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public boolean doImport(BerlinModelImportConfigurator bmiConfig){
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CdmApplicationController cdmApp;
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if (bmiConfig == null){
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logger.warn("BerlinModelImportConfiguration is null");
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return false;
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}else if (! bmiConfig.isValid()){
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logger.warn("BerlinModelImportConfiguration is not valid");
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return false;
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}
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try {
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cdmApp = CdmApplicationController.NewInstance(bmiConfig.getDestination(), bmiConfig.getDbSchemaValidation());
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} catch (DataSourceNotFoundException e) {
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logger.warn("could not connect to destination database");
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return false;
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}catch (TermNotFoundException e) {
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logger.warn("could not find needed term in destination datasource");
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return false;
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}
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Source source = bmiConfig.getSource();
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ReferenceBase sourceReference = bmiConfig.getSourceReference();
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System.out.println("Start import from BerlinModel ("+ bmiConfig.getSource().getDatabase() + ") to Cdm (" + cdmApp.getDatabaseService().getUrl() + ") ...");
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//Authors
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if (bmiConfig.isDoAuthors()){
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if (! BerlinModelAuthorIO.invoke(bmiConfig, cdmApp, authorStore)){
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logger.warn("No Authors imported");
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return false;
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}
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}else{
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authorStore = null;
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}
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//References
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if (bmiConfig.getDoReferences() != NONE){
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if (! BerlinModelReferenceIO.invoke(bmiConfig, cdmApp, referenceStore, authorStore)){
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return false;
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}
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}else{
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logger.warn("No References imported");
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referenceStore = null;
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}
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//TaxonNames
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if (bmiConfig.isDoTaxonNames()){
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if (! BerlinModelTaxonNameIO.invoke(bmiConfig, cdmApp, taxonNameStore, referenceStore, authorStore)){
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//return false;
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}
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}else{
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logger.warn("No TaxonNames imported");
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taxonNameStore = null;
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}
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//make and save RelNames
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if(bmiConfig.isDoRelNames()){
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if (! BerlinModelTaxonNameIO.invokeRelations(bmiConfig, cdmApp, taxonNameStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No RelPTaxa imported");
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}
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//TODO NomStatus
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//TODO Types
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//make and save Taxa
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if(bmiConfig.isDoTaxa()){
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if (! BerlinModelTaxonIO.invoke(bmiConfig, cdmApp, taxonStore, taxonNameStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No Taxa imported");
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taxonNameStore = null;
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}
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//make and save RelPTaxa
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if(bmiConfig.isDoRelTaxa()){
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if (! BerlinModelTaxonIO.invokeRelations(bmiConfig, cdmApp, taxonStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No RelPTaxa imported");
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}
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//make and save Facts
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if(bmiConfig.isDoFacts()){
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if (! BerlinModelFactsIO.invoke(bmiConfig, cdmApp, taxonStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No Facts imported");
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}
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//return
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System.out.println("End import from BerlinModel ("+ source.getDatabase() + ") to Cdm (" + cdmApp.getDatabaseService().getUrl() + ") ...");
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return true;
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}
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}
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