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package eu.etaxonomy.cdm.io.berlinModel;
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import static eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer.*;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Service;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.api.service.ITaxonService;
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import eu.etaxonomy.cdm.io.source.Source;
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import eu.etaxonomy.cdm.model.agent.Agent;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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@Service
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public class BerlinModelImport {
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private static final Logger logger = Logger.getLogger(BerlinModelImport.class);
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private boolean deleteAll = false;
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private boolean makeAuthors = false;
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private boolean makeReferences = true;
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private boolean makeTaxonNames = true;
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private boolean makeTaxa = true;
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private boolean makeRelNames = false;
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private boolean makeNameStatus = false;
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private boolean makeRelTaxa = true;
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private boolean makeFacts = true;
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//BerlinModelDB
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private Source source;
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//CdmApplication
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private CdmApplicationController cdmApp;
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//Constants
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//final boolean OBLIGATORY = true;
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//final boolean FACULTATIVE = false;
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final int modCount = 1000;
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//Hashmaps for Joins
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//OLD: private Map<Integer, UUID> referenceMap = new HashMap<Integer, UUID>();
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private MapWrapper<Agent> authorStore= new MapWrapper<Agent>(null);
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private MapWrapper<ReferenceBase> referenceStore= new MapWrapper<ReferenceBase>(null);
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private MapWrapper<TaxonNameBase> taxonNameStore = new MapWrapper<TaxonNameBase>(null);
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private MapWrapper<TaxonBase> taxonStore = new MapWrapper<TaxonBase>(null);
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/**
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* Executes the whole
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*/
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public boolean doImport(Source source, CdmApplicationController cdmApp){
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if (source == null || cdmApp == null){
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throw new NullPointerException("Source and CdmApplicationController must not be null");
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}
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this.source = source;
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this.cdmApp = cdmApp;
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//Authors
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if (makeAuthors){
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if (! BerlinModelAuthorIO.invoke(source, cdmApp, deleteAll, authorStore)){
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logger.warn("No Authors imported");
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return false;
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}
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}else{
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authorStore = null;
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}
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//References
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if (makeReferences){
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if (! BerlinModelReferenceIO.invoke(source, cdmApp, deleteAll, referenceStore, authorStore)){
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return false;
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}
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}else{
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logger.warn("No References imported");
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referenceStore = null;
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}
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//TaxonNames
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if (makeTaxonNames){
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if (! BerlinModelTaxonNameIO.invoke(source, cdmApp, deleteAll, taxonNameStore, referenceStore, authorStore)){
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//return false;
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}
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}else{
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logger.warn("No TaxonNames imported");
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taxonNameStore = null;
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}
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//make and save Taxa
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if(makeTaxa){
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if (! BerlinModelTaxonIO.invoke(source, cdmApp, deleteAll, taxonStore, taxonNameStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No Taxa imported");
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taxonNameStore = null;
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}
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//make and save RelPTaxa
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if(makeRelTaxa){
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if (! BerlinModelTaxonIO.invokeRelations(source, cdmApp, deleteAll, taxonStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No RelPTaxa imported");
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}
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//make and save Facts
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//makeRelTaxa();
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//make and save Facts
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if(makeFacts){
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if (! BerlinModelFactsIO.invoke(source, cdmApp, deleteAll, taxonStore, referenceStore)){
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return false;
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}
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}else{
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logger.warn("No Facts imported");
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}
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//return
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return true;
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}
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}
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