1
|
/**
|
2
|
* Copyright (C) 2009 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.io.tcsxml.in;
|
11
|
|
12
|
import java.io.InputStream;
|
13
|
import java.lang.reflect.Method;
|
14
|
import java.net.MalformedURLException;
|
15
|
import java.net.URL;
|
16
|
|
17
|
import org.apache.log4j.Logger;
|
18
|
import org.jdom.Element;
|
19
|
import org.jdom.Namespace;
|
20
|
import org.springframework.stereotype.Component;
|
21
|
|
22
|
import eu.etaxonomy.cdm.common.XmlHelp;
|
23
|
import eu.etaxonomy.cdm.database.ICdmDataSource;
|
24
|
import eu.etaxonomy.cdm.io.common.IImportConfigurator;
|
25
|
import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
|
26
|
import eu.etaxonomy.cdm.io.common.ImportStateBase;
|
27
|
import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
|
28
|
import eu.etaxonomy.cdm.io.tcsxml.DefaultTcsXmlPlaceholders;
|
29
|
import eu.etaxonomy.cdm.io.tcsxml.ITcsXmlPlaceholderClass;
|
30
|
import eu.etaxonomy.cdm.model.reference.IDatabase;
|
31
|
import eu.etaxonomy.cdm.model.reference.ReferenceBase;
|
32
|
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
|
33
|
|
34
|
@Component
|
35
|
public class TcsXmlImportConfigurator extends ImportConfiguratorBase<TcsXmlImportState> implements IImportConfigurator {
|
36
|
private static final Logger logger = Logger.getLogger(TcsXmlImportConfigurator.class);
|
37
|
|
38
|
//TODO
|
39
|
private static IInputTransformer defaultTransformer = null;
|
40
|
|
41
|
|
42
|
private boolean doMetaData = true;
|
43
|
private boolean doSpecimen = true;
|
44
|
|
45
|
private Method functionMetaDataDetailed = null;
|
46
|
private ITcsXmlPlaceholderClass placeholderClass;
|
47
|
|
48
|
// rdfNamespace
|
49
|
Namespace tcsXmlNamespace;
|
50
|
|
51
|
protected static Namespace nsTcsXml = Namespace.getNamespace("http://www.tdwg.org/schemas/tcs/1.01");
|
52
|
|
53
|
// @Autowired
|
54
|
// TcsXmlMetaDataImport tcsXmlMetaDataImport;
|
55
|
// @Autowired
|
56
|
// TcsXmlSpecimensImport tcsXmlSpecimensIO;
|
57
|
// @Autowired
|
58
|
// TcsXmlPublicationsImport tcsXmlPublicationsIO;
|
59
|
// @Autowired
|
60
|
// TcsXmlTaxonNameImport tcsXmlTaxonNameIO;
|
61
|
// @Autowired
|
62
|
// TcsXmlTaxonNameRelationsImport tcsXmlTaxonNameRelationsIO;
|
63
|
// @Autowired
|
64
|
// TcsXmlTaxonImport tcsXmlTaxonIO;
|
65
|
// @Autowired
|
66
|
// TcsXmlTaxonRelationsImport tcsXmlTaxonRelationsIO;
|
67
|
|
68
|
protected void makeIoClassList(){
|
69
|
// ioBeans = new String[]{
|
70
|
// "tcsXmlMetaDataImport"
|
71
|
// , "tcsXmlSpecimensIO"
|
72
|
// , "tcsXmlPublicationsIO"
|
73
|
// , "tcsXmlTaxonNameIO"
|
74
|
// , "tcsXmlTaxonNameRelationsIO"
|
75
|
// , "tcsXmlTaxonIO"
|
76
|
// , "tcsXmlTaxonRelationsIO"
|
77
|
// };
|
78
|
|
79
|
ioClassList = new Class[]{
|
80
|
TcsXmlMetaDataImport.class
|
81
|
, TcsXmlSpecimensImport.class
|
82
|
, TcsXmlPublicationsImport.class
|
83
|
, TcsXmlTaxonNameImport.class
|
84
|
, TcsXmlTaxonNameRelationsImport.class
|
85
|
, TcsXmlTaxonImport.class
|
86
|
, TcsXmlTaxonRelationsImport.class
|
87
|
};
|
88
|
};
|
89
|
|
90
|
public static TcsXmlImportConfigurator NewInstance(String url,
|
91
|
ICdmDataSource destination){
|
92
|
return new TcsXmlImportConfigurator(url, destination);
|
93
|
}
|
94
|
|
95
|
/**
|
96
|
* @param berlinModelSource
|
97
|
* @param sourceReference
|
98
|
* @param destination
|
99
|
*/
|
100
|
private TcsXmlImportConfigurator() {
|
101
|
super(defaultTransformer);
|
102
|
// setSource(url);
|
103
|
// setDestination(destination);
|
104
|
}
|
105
|
|
106
|
/**
|
107
|
* @param berlinModelSource
|
108
|
* @param sourceReference
|
109
|
* @param destination
|
110
|
*/
|
111
|
private TcsXmlImportConfigurator(String url, ICdmDataSource destination) {
|
112
|
super(defaultTransformer);
|
113
|
setSource(url);
|
114
|
setDestination(destination);
|
115
|
}
|
116
|
|
117
|
|
118
|
|
119
|
/* (non-Javadoc)
|
120
|
* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getNewState()
|
121
|
*/
|
122
|
public TcsXmlImportState getNewState() {
|
123
|
return new TcsXmlImportState(this);
|
124
|
}
|
125
|
|
126
|
/* (non-Javadoc)
|
127
|
* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSource()
|
128
|
*/
|
129
|
public String getSource() {
|
130
|
return (String)super.getSource();
|
131
|
}
|
132
|
|
133
|
/**
|
134
|
* @param file
|
135
|
*/
|
136
|
public void setSource(String file) {
|
137
|
super.setSource(file);
|
138
|
}
|
139
|
|
140
|
/**
|
141
|
* @return
|
142
|
*/
|
143
|
public Element getSourceRoot(){
|
144
|
String source = getSource();
|
145
|
try {
|
146
|
URL url;
|
147
|
url = new URL(source);
|
148
|
Object o = url.getContent();
|
149
|
InputStream is = (InputStream)o;
|
150
|
Element root = XmlHelp.getRoot(is);
|
151
|
makeNamespaces(root);
|
152
|
return root;
|
153
|
} catch (MalformedURLException e) {
|
154
|
e.printStackTrace();
|
155
|
}catch (Exception e) {
|
156
|
// TODO Auto-generated catch block
|
157
|
e.printStackTrace();
|
158
|
}
|
159
|
return null;
|
160
|
}
|
161
|
|
162
|
private boolean makeNamespaces(Element root){
|
163
|
tcsXmlNamespace = root.getNamespace();
|
164
|
if (tcsXmlNamespace == null
|
165
|
/**|| tcNamespace == null
|
166
|
* || tnNamespace == null
|
167
|
* || commonNamespace == null
|
168
|
* || geoNamespace == null
|
169
|
* || publicationNamespace == null*/){
|
170
|
logger.warn("At least one Namespace is NULL");
|
171
|
}
|
172
|
return true;
|
173
|
}
|
174
|
|
175
|
|
176
|
/* (non-Javadoc)
|
177
|
* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSourceReference()
|
178
|
*/
|
179
|
@Override
|
180
|
public ReferenceBase getSourceReference() {
|
181
|
//TODO
|
182
|
if (this.sourceReference == null){
|
183
|
logger.warn("getSource Reference not yet fully implemented");
|
184
|
ReferenceFactory refFactory = ReferenceFactory.newInstance();
|
185
|
sourceReference = refFactory.newDatabase();
|
186
|
sourceReference.setTitleCache("XXX");
|
187
|
}
|
188
|
return sourceReference;
|
189
|
}
|
190
|
|
191
|
|
192
|
/* (non-Javadoc)
|
193
|
* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getSourceNameString()
|
194
|
*/
|
195
|
public String getSourceNameString() {
|
196
|
if (this.getSource() == null){
|
197
|
return null;
|
198
|
}else{
|
199
|
return this.getSource();
|
200
|
}
|
201
|
}
|
202
|
|
203
|
public Namespace getTcsXmlNamespace() {
|
204
|
return tcsXmlNamespace;
|
205
|
}
|
206
|
|
207
|
public void setTcsXmlNamespace(Namespace tcsXmlNamespace) {
|
208
|
this.tcsXmlNamespace = tcsXmlNamespace;
|
209
|
}
|
210
|
|
211
|
|
212
|
/**
|
213
|
* @return the funMetaDataDetailed
|
214
|
*/
|
215
|
public Method getFunctionMetaDataDetailed() {
|
216
|
if (functionMetaDataDetailed == null){
|
217
|
functionMetaDataDetailed = getDefaultFunction(TcsXmlMetaDataImport.class, "defaultMetaDataDetailedFunction");
|
218
|
}
|
219
|
return functionMetaDataDetailed;
|
220
|
|
221
|
}
|
222
|
|
223
|
/**
|
224
|
* @param funMetaDataDetailed the funMetaDataDetailed to set
|
225
|
*/
|
226
|
public void setFunctionMetaDataDetailed(Method functionMetaDataDetailed) {
|
227
|
this.functionMetaDataDetailed = functionMetaDataDetailed;
|
228
|
}
|
229
|
|
230
|
/**
|
231
|
* @return the doMetaData
|
232
|
*/
|
233
|
public boolean isDoMetaData() {
|
234
|
return doMetaData;
|
235
|
}
|
236
|
|
237
|
/**
|
238
|
* @param doMetaData the doMetaData to set
|
239
|
*/
|
240
|
public void setDoMetaData(boolean doMetaData) {
|
241
|
this.doMetaData = doMetaData;
|
242
|
}
|
243
|
|
244
|
|
245
|
/**
|
246
|
* @return the doSpecimen
|
247
|
*/
|
248
|
public boolean isDoSpecimen() {
|
249
|
return doSpecimen;
|
250
|
}
|
251
|
|
252
|
/**
|
253
|
* @param doSpecimen the doSpecimen to set
|
254
|
*/
|
255
|
public void setDoSpecimen(boolean doSpecimen) {
|
256
|
this.doSpecimen = doSpecimen;
|
257
|
}
|
258
|
|
259
|
/**
|
260
|
* @return the placeholderClass
|
261
|
*/
|
262
|
public ITcsXmlPlaceholderClass getPlaceholderClass() {
|
263
|
if (placeholderClass == null){
|
264
|
placeholderClass = new DefaultTcsXmlPlaceholders();
|
265
|
}
|
266
|
return placeholderClass;
|
267
|
}
|
268
|
|
269
|
/**
|
270
|
* @param placeholderClass the placeholderClass to set
|
271
|
*/
|
272
|
public void setPlaceholderClass(ITcsXmlPlaceholderClass placeholderClass) {
|
273
|
this.placeholderClass = placeholderClass;
|
274
|
}
|
275
|
|
276
|
|
277
|
}
|