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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in;
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import java.io.File;
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import java.lang.reflect.Method;
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import java.net.MalformedURLException;
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import java.net.URL;
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import java.util.HashSet;
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import java.util.Set;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonImport.PublishMarkerChooser;
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import eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelGeneralImportValidator;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.ImportStateBase;
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import eu.etaxonomy.cdm.io.common.Source;
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import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
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import eu.etaxonomy.cdm.io.erms.ErmsTransformer;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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/**
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* @author a.mueller
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* @created 20.03.2008
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* @version 1.0
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*/
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public class BerlinModelImportConfigurator extends ImportConfiguratorBase<BerlinModelImportState> implements IImportConfigurator{
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private static Logger logger = Logger.getLogger(BerlinModelImportConfigurator.class);
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public static BerlinModelImportConfigurator NewInstance(Source berlinModelSource, ICdmDataSource destination){
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return new BerlinModelImportConfigurator(berlinModelSource, destination);
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}
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private PublishMarkerChooser taxonPublishMarker = PublishMarkerChooser.ALL;
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//TODO
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private static IInputTransformer defaultTransformer = null;
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/* Max number of records to be saved with one service call */
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private int recordsPerTransaction = 1000;
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private Method namerelationshipTypeMethod;
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private Method uuidForDefTermMethod;
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private Method userTransformationMethod;
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private Method nameTypeDesignationStatusMethod;
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private Set<Synonym> proParteSynonyms = new HashSet<Synonym>();
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private Set<Synonym> partialSynonyms = new HashSet<Synonym>();
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// NameFact stuff
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private URL mediaUrl;
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private File mediaPath;
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private int maximumNumberOfNameFacts;
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private boolean isIgnore0AuthorTeam = false;
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protected void makeIoClassList(){
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ioClassList = new Class[]{
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BerlinModelGeneralImportValidator.class
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, BerlinModelUserImport.class
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, BerlinModelAuthorImport.class
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, BerlinModelAuthorTeamImport.class
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, BerlinModelRefDetailImport.class
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, BerlinModelReferenceImport.class
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, BerlinModelTaxonNameImport.class
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, BerlinModelTaxonNameRelationImport.class
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, BerlinModelNameStatusImport.class
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, BerlinModelNameFactsImport.class
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, BerlinModelTypesImport.class
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, BerlinModelTaxonImport.class
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, BerlinModelTaxonRelationImport.class
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, BerlinModelFactsImport.class
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, BerlinModelOccurrenceImport.class
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, BerlinModelWebMarkerCategoryImport.class
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, BerlinModelWebMarkerImport.class
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};
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getNewState()
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*/
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public ImportStateBase getNewState() {
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return new BerlinModelImportState(this);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private BerlinModelImportConfigurator(Source berlinModelSource, ICdmDataSource destination) {
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super(defaultTransformer);
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setNomenclaturalCode(NomenclaturalCode.ICBN); //default for Berlin Model
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setSource(berlinModelSource);
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setDestination(destination);
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}
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public Source getSource() {
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return (Source)super.getSource();
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}
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public void setSource(Source berlinModelSource) {
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super.setSource(berlinModelSource);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.tcsrdf.IImportConfigurator#getSourceReference()
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*/
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public ReferenceBase getSourceReference() {
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ReferenceFactory refFactory = ReferenceFactory.newInstance();
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if (sourceReference == null){
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sourceReference = refFactory.newDatabase();
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if (getSource() != null){
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sourceReference.setTitleCache(getSource().getDatabase());
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}
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}
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return sourceReference;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getSourceNameString()
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*/
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public String getSourceNameString() {
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if (this.getSource() == null){
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return null;
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}else{
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return this.getSource().getDatabase();
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}
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}
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protected void addProParteSynonym(Synonym proParteSynonym){
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this.proParteSynonyms.add(proParteSynonym);
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}
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protected boolean isProParteSynonym(Synonym synonym){
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return this.proParteSynonyms.contains(synonym);
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}
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protected void addPartialSynonym(Synonym partialSynonym){
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this.partialSynonyms.add(partialSynonym);
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}
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protected boolean isPartialSynonym(Synonym synonym){
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return this.partialSynonyms.contains(synonym);
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}
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/**
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* @return the mediaUrl
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*/
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public URL getMediaUrl() {
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return mediaUrl;
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}
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/**
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* @param mediaUrl the mediaUrl to set
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*/
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public void setMediaUrl(URL mediaUrl) {
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this.mediaUrl = mediaUrl;
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}
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/**
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* @return the mediaPath
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*/
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public File getMediaPath() {
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return mediaPath;
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}
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/**
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* @param mediaPath the mediaPath to set
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*/
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public void setMediaPath(File mediaPath) {
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this.mediaPath = mediaPath;
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}
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public void setMediaPath(String mediaPathString){
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this.mediaPath = new File(mediaPathString);
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}
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public void setMediaUrl(String mediaUrlString) {
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try {
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this.mediaUrl = new URL(mediaUrlString);
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} catch (MalformedURLException e) {
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logger.error("Could not set mediaUrl because it was malformed: " + mediaUrlString);
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}
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}
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/**
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* @return the maximumNumberOfNameFacts
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*/
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public int getMaximumNumberOfNameFacts() {
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return maximumNumberOfNameFacts;
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}
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/**
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* set to 0 for unlimited
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*
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* @param maximumNumberOfNameFacts the maximumNumberOfNameFacts to set
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*/
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public void setMaximumNumberOfNameFacts(int maximumNumberOfNameFacts) {
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this.maximumNumberOfNameFacts = maximumNumberOfNameFacts;
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}
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/**
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* If true, an authorTeam with authorTeamId = 0 is not imported (casus Salvador)
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* @return the isIgnore0AuthorTeam
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*/
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public boolean isIgnore0AuthorTeam() {
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return isIgnore0AuthorTeam;
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}
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/**
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* @param isIgnore0AuthorTeam the isIgnore0AuthorTeam to set
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*/
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public void setIgnore0AuthorTeam(boolean isIgnore0AuthorTeam) {
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this.isIgnore0AuthorTeam = isIgnore0AuthorTeam;
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}
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/**
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* @return the namerelationshipTypeMethod
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*/
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public Method getNamerelationshipTypeMethod() {
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return namerelationshipTypeMethod;
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}
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/**
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* @param namerelationshipTypeMethod the namerelationshipTypeMethod to set
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*/
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public void setNamerelationshipTypeMethod(Method namerelationshipTypeMethod) {
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this.namerelationshipTypeMethod = namerelationshipTypeMethod;
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}
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/**
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* @return the taxonPublishMarker
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*/
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public BerlinModelTaxonImport.PublishMarkerChooser getTaxonPublishMarker() {
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return taxonPublishMarker;
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}
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/**
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* @param taxonPublishMarker the taxonPublishMarker to set
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*/
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public void setTaxonPublishMarker(
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BerlinModelTaxonImport.PublishMarkerChooser taxonPublishMarker) {
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this.taxonPublishMarker = taxonPublishMarker;
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}
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/**
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* @return the uuidForDefTermMethod
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*/
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public Method getUuidForDefTermMethod() {
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return uuidForDefTermMethod;
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}
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/**
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* @param uuidForDefTermMethod the uuidForDefTermMethod to set
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*/
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public void setUuidForDefTermMethod(Method uuidForDefTermMethod) {
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this.uuidForDefTermMethod = uuidForDefTermMethod;
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}
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/**
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* @return the userTransformationMethod
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*/
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public Method getUserTransformationMethod() {
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return userTransformationMethod;
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}
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/**
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* @param userTransformationMethod the userTransformationMethod to set
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*/
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public void setUserTransformationMethod(Method userTransformationMethod) {
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this.userTransformationMethod = userTransformationMethod;
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}
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/**
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* @return the nameTypeDesignationStatusMethod
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*/
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public Method getNameTypeDesignationStatusMethod() {
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return nameTypeDesignationStatusMethod;
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}
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/**
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* @param nameTypeDesignationStatusMethod the nameTypeDesignationStatusMethod to set
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*/
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public void setNameTypeDesignationStatusMethod(
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Method nameTypeDesignationStatusMethod) {
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this.nameTypeDesignationStatusMethod = nameTypeDesignationStatusMethod;
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}
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/**
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* @return the limitSave
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*/
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public int getRecordsPerTransaction() {
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return recordsPerTransaction;
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}
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/**
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* @param limitSave the limitSave to set
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*/
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public void setRecordsPerTransaction(int recordsPerTransaction) {
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this.recordsPerTransaction = recordsPerTransaction;
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}
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}
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