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package eu.etaxonomy.cdm.model;

import java.util.ArrayList;

import java.util.Collection;

import java.util.HashSet;

import java.util.List;

import java.util.Set;

import javax.xml.bind.annotation.XmlAccessType;

import javax.xml.bind.annotation.XmlAccessorType;

import javax.xml.bind.annotation.XmlElement;

import javax.xml.bind.annotation.XmlElementWrapper;

import javax.xml.bind.annotation.XmlElements;

import javax.xml.bind.annotation.XmlRootElement;

import javax.xml.bind.annotation.XmlType;

import eu.etaxonomy.cdm.model.agent.Address;

import eu.etaxonomy.cdm.model.agent.Agent;

import eu.etaxonomy.cdm.model.agent.Contact;

import eu.etaxonomy.cdm.model.agent.Institution;

import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.agent.Team;

import eu.etaxonomy.cdm.model.common.Keyword;

import eu.etaxonomy.cdm.model.common.RelationshipBase;

import eu.etaxonomy.cdm.model.common.TermBase;

import eu.etaxonomy.cdm.model.common.VersionableEntity;

import eu.etaxonomy.cdm.model.name.BotanicalName;

import eu.etaxonomy.cdm.model.name.CultivarPlantName;

import eu.etaxonomy.cdm.model.name.HomotypicalGroup;

import eu.etaxonomy.cdm.model.name.HybridRelationship;

import eu.etaxonomy.cdm.model.name.NameRelationship;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.TaxonNameBase;

import eu.etaxonomy.cdm.model.name.ZoologicalName;

import eu.etaxonomy.cdm.model.reference.Article;

import eu.etaxonomy.cdm.model.reference.Book;

import eu.etaxonomy.cdm.model.reference.BookSection;

import eu.etaxonomy.cdm.model.reference.CdDvd;

import eu.etaxonomy.cdm.model.reference.ConferenceProceedings;

import eu.etaxonomy.cdm.model.reference.Database;

import eu.etaxonomy.cdm.model.reference.Generic;

import eu.etaxonomy.cdm.model.reference.InProceedings;

import eu.etaxonomy.cdm.model.reference.Journal;

import eu.etaxonomy.cdm.model.reference.Map;

import eu.etaxonomy.cdm.model.reference.Patent;

import eu.etaxonomy.cdm.model.reference.PersonalCommunication;

import eu.etaxonomy.cdm.model.reference.PrintSeries;

import eu.etaxonomy.cdm.model.reference.Proceedings;

import eu.etaxonomy.cdm.model.reference.ReferenceBase;

import eu.etaxonomy.cdm.model.reference.Report;

import eu.etaxonomy.cdm.model.reference.Thesis;

import eu.etaxonomy.cdm.model.reference.WebPage;

import eu.etaxonomy.cdm.model.taxon.Synonym;

import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;

import eu.etaxonomy.cdm.model.taxon.Taxon;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;

@XmlAccessorType(XmlAccessType.FIELD)

@XmlType(name = "", propOrder = {

		"agents",

		"agentData",

	    "terms",

	    "references",

	    "taxonomicNames",

	    "taxa",

	    "synonyms",

	    "relationships",

	    "homotypicalGroups"

})

@XmlRootElement(name = "DataSet", namespace = "http://etaxonomy.eu/cdm/model/1.0")

public class DataSet {

    // Some fields are of type List and some are of type Set. 

	// This is mainly because

	// the service classes return lists, i.e.

    // TaxonServiceImpl.getRootTaxa() returns List<Taxon>

	// and the Taxon methods return sets, i.e.

    // Taxon.getTaxonomicChildren() returns Set<Taxon>.

    @XmlElementWrapper(name = "Agents")

    @XmlElements({

        @XmlElement(name = "Team", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Team.class),

        @XmlElement(name = "Institution", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Institution.class),

        @XmlElement(name = "Person", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Person.class)

    })

    protected List<Agent> agents;

    @XmlElementWrapper(name = "AgentData")

    @XmlElements({

    @XmlElement(name = "Address", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Address.class),

    @XmlElement(name = "Contact", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Contact.class),

    @XmlElement(name = "Membership", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = InstitutionalMembership.class)

    })

    protected List<VersionableEntity> agentData;

    @XmlElementWrapper(name = "Terms")

    @XmlElements({

        @XmlElement(name = "Keyword", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = Keyword.class),

        @XmlElement(name = "Rank", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = Rank.class)

    })

    protected List<TermBase> terms;

    @XmlElementWrapper(name = "References")

    @XmlElements({

    	@XmlElement(name = "Article", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Article.class),

    	@XmlElement(name = "ConferenceProceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = ConferenceProceedings.class),

    	@XmlElement(name = "Generic", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Generic.class),

    	@XmlElement(name = "Patent", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Patent.class),

    	@XmlElement(name = "PersonalCommunication", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = PersonalCommunication.class),

    	@XmlElement(name = "CdDvd", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = CdDvd.class),

    	@XmlElement(name = "Database", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Database.class),

    	@XmlElement(name = "Journal", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Journal.class),

    	@XmlElement(name = "Map", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Map.class),

    	@XmlElement(name = "Book", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Book.class),

    	@XmlElement(name = "Proceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Proceedings.class),

    	@XmlElement(name = "PrintSeries", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = PrintSeries.class),

    	@XmlElement(name = "Report", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Report.class),

    	@XmlElement(name = "Thesis", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Thesis.class),

    	@XmlElement(name = "WebPage", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = WebPage.class),

    	@XmlElement(name = "BookSection", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = BookSection.class),

    	@XmlElement(name = "InProceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = InProceedings.class)

    })

    protected List<ReferenceBase> references;

    @XmlElementWrapper(name = "TaxonomicNames")

    @XmlElements({

    	@XmlElement(name = "ZoologicalName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = ZoologicalName.class),

    	@XmlElement(name = "CultivarPlantName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = CultivarPlantName.class),

    	@XmlElement(name = "BotanicalName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = BotanicalName.class)

    })

    protected List<TaxonNameBase> taxonomicNames;

    @XmlElementWrapper(name = "Taxa")

    @XmlElement(name = "Taxon", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")

    protected List<Taxon> taxa;

    @XmlElementWrapper(name = "Synonyms")

    @XmlElement(name = "Synonym", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")

    protected Set<Synonym> synonyms;

    @XmlElementWrapper(name = "Relationships")

    @XmlElements({

    	@XmlElement(name = "TaxonRelationship", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = TaxonRelationship.class),

    	@XmlElement(name = "SynonymRelationship", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = SynonymRelationship.class),

    	@XmlElement(name = "NameRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NameRelationship.class),

    	@XmlElement(name = "HybridRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = HybridRelationship.class)

    })

    protected Set<RelationshipBase> relationships;

    @XmlElementWrapper(name = "HomotypicalGroups")

    @XmlElement(name = "HomotypicalGroup", namespace = "http://etaxonomy.eu/cdm/model/name/1.0")

    protected Set<HomotypicalGroup> homotypicalGroups;

    public DataSet () {

//    	this.agents = new 

//    	this.agentData = new 

//      this.terms   	

//      this.references    	

//    	this.taxonomicNames

//    	this.taxa

        this.synonyms = new HashSet<Synonym>();

    	this.relationships = new HashSet<RelationshipBase>();

    	this.homotypicalGroups = new HashSet<HomotypicalGroup>();

    }

    /**

     * Gets the value of the agents property.

     * 

     * @return

     *     possible object is

     *     {@link List<Agent> }

     *     

     */

    public List<Agent> getAgents() {

        return agents;

    }

    /**

     * Sets the value of the agents property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<Agent> }

     *     

     */

    public void setAgents(List<Agent> value) {

        this.agents = value;

    }

    /**

     * Gets the value of the agentData property.

     * 

     * @return

     *     possible object is

     *     {@link List<VersionableEntity> }

     *     

     */

    public List<VersionableEntity> getAgentData() {

        return agentData;

    }

    /**

     * Sets the value of the agentData property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<VersionableEntity> }

     *     

     */

    public void setAgentData(List<VersionableEntity> value) {

        this.agentData = value;

    }

    /**

     * Gets the value of the terms property.

     * 

     * @return

     *     possible object is

     *     {@link List<TermBase> }

     *     

     */

    public List<TermBase> getTerms() {

        return terms;

    }

    /**

     * Sets the value of the terms property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<TermBase> }

     *     

     */

    public void setTerms(List<TermBase> value) {

        this.terms = value;

    }

    /**

     * Gets the value of the taxonomicNames property.

     * 

     * @return

     *     possible object is

     *     {@link List<NonViralName> }

     *     

     */

    public List<TaxonNameBase> getTaxonomicNames() {

        return taxonomicNames;

    }

    /**

     * Sets the value of the taxonomicNames property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<NonViralName> }

     *     

     */

    public void setTaxonomicNames(List<TaxonNameBase> value) {

        this.taxonomicNames = value;

    }

    /**

     * Gets the value of the taxonomicNames property.

     * 

     * @return

     *     possible object is

     *     {@link List<NonViralName> }

     *     

     */

    public List<ReferenceBase> getReferences() {

        return references;

    }

    /**

     * Sets the value of the taxonomicNames property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<NonViralName> }

     *     

     */

    public void setReferences(List<ReferenceBase> value) {

        this.references = value;

    }

    /**

     * Gets the value of the taxa property.

     * 

     * @return

     *     possible object is

     *     {@link List<Taxon> }

     *     

     */

//    public List<Taxon> getTaxa() {

//        return taxa;

//    }

    /**

     * Gets the value of the taxa property as {@link Collection<TaxonBase> }

     * 

     * @return

     *     possible object is

     *     {@link Collection<TaxonBase> }

     *     

     */

    public Collection<TaxonBase> getTaxonBases() {

        // FIXME: This is a dirty trick.

    	Object obj = (Object)taxa;

    	Collection<TaxonBase> taxonBases = (Collection<TaxonBase>)obj;

        return taxonBases;

    }

    public Collection<TaxonBase> getTaxonBases_() {

    	Collection<TaxonBase> taxonBases = new HashSet<TaxonBase>();

    	for (Taxon taxon: taxa) {

    		taxonBases.add(taxon);

    	}

    	for (Synonym synonym: synonyms) {

    		taxonBases.add(synonym);

    	}

        return taxonBases;

    }

    /**

     * Sets the value of the taxa property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<Taxon> }

     *     

     */

    public void setTaxa(List<Taxon> value) {

        this.taxa = value;

    }

    /**

     * Adds the taxa in value to the taxa property list.

     * 

     * @param value

     *     allowed object is

     *     {@link Collection<Taxon> }

     *     

     */

    public void addTaxa(Collection<Taxon> value) {

    	for (Taxon taxon: value) {

    		this.taxa.add(taxon);

    	}

    }

    /**

     * Gets the value of the synonyms property.

     * 

     * @return

     *     possible object is

     *     {@link List<Synonym> }

     *     

     */

    public Set<Synonym> getSynonyms() {

        return synonyms;

    }

    /**

     * Sets the value of the synonyms property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<Synonym> }

     *     

     */

    public void setSynonyms(Set<Synonym> value) {

        this.synonyms = value;

    }

    /**

     * Adds the synonym in value to the synonyms property list.

     * 

     * @param value

     *     allowed object is

     *     {@link Collection<Synonym> }

     *     

     */

    public void addSynonyms(Collection<Synonym> value) {

    	for (Synonym synonym: value) {

    		this.synonyms.add(synonym);

    	}

    }

    /**

     * Gets the value of the relationships property.

     * 

     * @return

     *     possible object is

     *     {@link Set<RelationshipBase> }

     *     

     */

    public Set<RelationshipBase> getRelationships() {

        return relationships;

    }

    /**

     * Sets the value of the relationships property.

     * 

     * @param value

     *     allowed object is

     *     {@link Set<RelationshipBase> }

     *     

     */

    public void setRelationships(Set<RelationshipBase> value) {

        this.relationships = value;

    }

    /**

     * Adds the relationship in value to the relationships property list.

     * 

     * @param value

     *     allowed object is

     *     {@link Collection<RelationshipBase> }

     *     

     */

    public void addRelationships(Collection<? extends RelationshipBase> value) {

    	for (RelationshipBase relationship: value) {

    		this.relationships.add(relationship);

    	}

    }

    /**

     * Gets the value of the synonyms property.

     * 

     * @return

     *     possible object is

     *     {@link List<Synonym> }

     *     

     */

    public Set<HomotypicalGroup> getHomotypicalGroups() {

        return homotypicalGroups;

    }

    /**

     * Sets the value of the synonyms property.

     * 

     * @param value

     *     allowed object is

     *     {@link List<Synonym> }

     *     

     */

    public void setHomotypicalGroups(Set<HomotypicalGroup> value) {

        this.homotypicalGroups = value;

    }

}