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package eu.etaxonomy.cdm.model;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlElement;
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import javax.xml.bind.annotation.XmlElementWrapper;
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import javax.xml.bind.annotation.XmlElements;
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import javax.xml.bind.annotation.XmlRootElement;
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import javax.xml.bind.annotation.XmlType;
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import eu.etaxonomy.cdm.model.agent.Address;
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import eu.etaxonomy.cdm.model.agent.Agent;
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import eu.etaxonomy.cdm.model.agent.Contact;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.Keyword;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.TermBase;
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import eu.etaxonomy.cdm.model.common.VersionableEntity;
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.CultivarPlantName;
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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import eu.etaxonomy.cdm.model.name.HybridRelationship;
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import eu.etaxonomy.cdm.model.name.NameRelationship;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.ZoologicalName;
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import eu.etaxonomy.cdm.model.reference.Article;
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import eu.etaxonomy.cdm.model.reference.Book;
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import eu.etaxonomy.cdm.model.reference.BookSection;
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import eu.etaxonomy.cdm.model.reference.CdDvd;
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import eu.etaxonomy.cdm.model.reference.ConferenceProceedings;
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import eu.etaxonomy.cdm.model.reference.Database;
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import eu.etaxonomy.cdm.model.reference.Generic;
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import eu.etaxonomy.cdm.model.reference.InProceedings;
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import eu.etaxonomy.cdm.model.reference.Journal;
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import eu.etaxonomy.cdm.model.reference.Map;
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import eu.etaxonomy.cdm.model.reference.Patent;
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import eu.etaxonomy.cdm.model.reference.PersonalCommunication;
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import eu.etaxonomy.cdm.model.reference.PrintSeries;
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import eu.etaxonomy.cdm.model.reference.Proceedings;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.reference.Report;
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import eu.etaxonomy.cdm.model.reference.Thesis;
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import eu.etaxonomy.cdm.model.reference.WebPage;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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@XmlAccessorType(XmlAccessType.FIELD)
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@XmlType(name = "", propOrder = {
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"agents",
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"agentData",
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"terms",
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"references",
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"taxonomicNames",
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"taxa",
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"synonyms",
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"relationships",
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"homotypicalGroups"
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})
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@XmlRootElement(name = "DataSet", namespace = "http://etaxonomy.eu/cdm/model/1.0")
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public class DataSet {
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// Some fields are of type List and some are of type Set.
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// This is mainly because
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// the service classes return lists, i.e.
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// TaxonServiceImpl.getRootTaxa() returns List<Taxon>
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// and the Taxon methods return sets, i.e.
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// Taxon.getTaxonomicChildren() returns Set<Taxon>.
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@XmlElementWrapper(name = "Agents")
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@XmlElements({
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@XmlElement(name = "Team", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Team.class),
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@XmlElement(name = "Institution", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Institution.class),
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@XmlElement(name = "Person", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Person.class)
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})
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protected List<Agent> agents;
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@XmlElementWrapper(name = "AgentData")
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@XmlElements({
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@XmlElement(name = "Address", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Address.class),
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@XmlElement(name = "Contact", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = Contact.class),
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@XmlElement(name = "Membership", namespace = "http://etaxonomy.eu/cdm/model/agent/1.0", type = InstitutionalMembership.class)
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})
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protected List<VersionableEntity> agentData;
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@XmlElementWrapper(name = "Terms")
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@XmlElements({
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@XmlElement(name = "Keyword", namespace = "http://etaxonomy.eu/cdm/model/common/1.0", type = Keyword.class),
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@XmlElement(name = "Rank", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = Rank.class)
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})
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protected List<TermBase> terms;
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@XmlElementWrapper(name = "References")
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@XmlElements({
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@XmlElement(name = "Article", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Article.class),
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@XmlElement(name = "ConferenceProceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = ConferenceProceedings.class),
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@XmlElement(name = "Generic", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Generic.class),
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@XmlElement(name = "Patent", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Patent.class),
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@XmlElement(name = "PersonalCommunication", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = PersonalCommunication.class),
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@XmlElement(name = "CdDvd", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = CdDvd.class),
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@XmlElement(name = "Database", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Database.class),
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@XmlElement(name = "Journal", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Journal.class),
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@XmlElement(name = "Map", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Map.class),
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@XmlElement(name = "Book", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Book.class),
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@XmlElement(name = "Proceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Proceedings.class),
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@XmlElement(name = "PrintSeries", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = PrintSeries.class),
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@XmlElement(name = "Report", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Report.class),
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@XmlElement(name = "Thesis", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = Thesis.class),
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@XmlElement(name = "WebPage", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = WebPage.class),
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@XmlElement(name = "BookSection", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = BookSection.class),
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@XmlElement(name = "InProceedings", namespace = "http://etaxonomy.eu/cdm/model/reference/1.0", type = InProceedings.class)
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})
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protected List<ReferenceBase> references;
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@XmlElementWrapper(name = "TaxonomicNames")
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@XmlElements({
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@XmlElement(name = "ZoologicalName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = ZoologicalName.class),
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@XmlElement(name = "CultivarPlantName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = CultivarPlantName.class),
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@XmlElement(name = "BotanicalName", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = BotanicalName.class)
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})
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protected List<TaxonNameBase> taxonomicNames;
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@XmlElementWrapper(name = "Taxa")
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@XmlElement(name = "Taxon", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")
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protected List<Taxon> taxa;
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@XmlElementWrapper(name = "Synonyms")
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@XmlElement(name = "Synonym", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0")
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protected Set<Synonym> synonyms;
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@XmlElementWrapper(name = "Relationships")
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@XmlElements({
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@XmlElement(name = "TaxonRelationship", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = TaxonRelationship.class),
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@XmlElement(name = "SynonymRelationship", namespace = "http://etaxonomy.eu/cdm/model/taxon/1.0", type = SynonymRelationship.class),
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@XmlElement(name = "NameRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = NameRelationship.class),
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@XmlElement(name = "HybridRelationship", namespace = "http://etaxonomy.eu/cdm/model/name/1.0", type = HybridRelationship.class)
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})
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protected Set<RelationshipBase> relationships;
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@XmlElementWrapper(name = "HomotypicalGroups")
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@XmlElement(name = "HomotypicalGroup", namespace = "http://etaxonomy.eu/cdm/model/name/1.0")
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protected Set<HomotypicalGroup> homotypicalGroups;
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public DataSet () {
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// this.agents = new
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// this.agentData = new
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// this.terms
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// this.references
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// this.taxonomicNames
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// this.taxa
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this.synonyms = new HashSet<Synonym>();
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this.relationships = new HashSet<RelationshipBase>();
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this.homotypicalGroups = new HashSet<HomotypicalGroup>();
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}
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/**
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* Gets the value of the agents property.
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*
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* @return
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* possible object is
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* {@link List<Agent> }
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*
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*/
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public List<Agent> getAgents() {
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return agents;
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}
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/**
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* Sets the value of the agents property.
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*
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* @param value
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* allowed object is
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* {@link List<Agent> }
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*
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*/
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public void setAgents(List<Agent> value) {
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this.agents = value;
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}
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/**
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* Gets the value of the agentData property.
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*
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* @return
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* possible object is
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* {@link List<VersionableEntity> }
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*
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*/
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public List<VersionableEntity> getAgentData() {
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return agentData;
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}
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/**
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* Sets the value of the agentData property.
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*
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* @param value
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* allowed object is
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* {@link List<VersionableEntity> }
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*
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*/
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public void setAgentData(List<VersionableEntity> value) {
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this.agentData = value;
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}
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/**
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* Gets the value of the terms property.
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*
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* @return
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* possible object is
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* {@link List<TermBase> }
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*
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*/
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public List<TermBase> getTerms() {
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return terms;
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}
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/**
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* Sets the value of the terms property.
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*
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* @param value
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* allowed object is
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* {@link List<TermBase> }
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*
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*/
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public void setTerms(List<TermBase> value) {
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this.terms = value;
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}
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/**
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* Gets the value of the taxonomicNames property.
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*
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* @return
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* possible object is
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* {@link List<NonViralName> }
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*
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*/
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public List<TaxonNameBase> getTaxonomicNames() {
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return taxonomicNames;
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}
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/**
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* Sets the value of the taxonomicNames property.
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*
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* @param value
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* allowed object is
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* {@link List<NonViralName> }
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*
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*/
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public void setTaxonomicNames(List<TaxonNameBase> value) {
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this.taxonomicNames = value;
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}
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/**
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* Gets the value of the taxonomicNames property.
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*
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* @return
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* possible object is
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* {@link List<NonViralName> }
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*
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*/
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public List<ReferenceBase> getReferences() {
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return references;
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}
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/**
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* Sets the value of the taxonomicNames property.
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*
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* @param value
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* allowed object is
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* {@link List<NonViralName> }
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*
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*/
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public void setReferences(List<ReferenceBase> value) {
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this.references = value;
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}
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/**
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* Gets the value of the taxa property.
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*
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* @return
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* possible object is
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* {@link List<Taxon> }
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*
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*/
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// public List<Taxon> getTaxa() {
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// return taxa;
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// }
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/**
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* Gets the value of the taxa property as {@link Collection<TaxonBase> }
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*
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* @return
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* possible object is
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* {@link Collection<TaxonBase> }
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*
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*/
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public Collection<TaxonBase> getTaxonBases() {
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// FIXME: This is a dirty trick.
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Object obj = (Object)taxa;
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Collection<TaxonBase> taxonBases = (Collection<TaxonBase>)obj;
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return taxonBases;
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}
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public Collection<TaxonBase> getTaxonBases_() {
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Collection<TaxonBase> taxonBases = new HashSet<TaxonBase>();
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for (Taxon taxon: taxa) {
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taxonBases.add(taxon);
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}
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for (Synonym synonym: synonyms) {
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taxonBases.add(synonym);
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}
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return taxonBases;
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}
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/**
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* Sets the value of the taxa property.
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*
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* @param value
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* allowed object is
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* {@link List<Taxon> }
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*
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*/
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public void setTaxa(List<Taxon> value) {
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this.taxa = value;
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}
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/**
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* Adds the taxa in value to the taxa property list.
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*
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* @param value
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* allowed object is
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* {@link Collection<Taxon> }
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*
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*/
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public void addTaxa(Collection<Taxon> value) {
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for (Taxon taxon: value) {
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this.taxa.add(taxon);
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}
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}
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/**
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* Gets the value of the synonyms property.
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*
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* @return
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* possible object is
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* {@link List<Synonym> }
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*
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*/
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public Set<Synonym> getSynonyms() {
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return synonyms;
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}
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/**
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* Sets the value of the synonyms property.
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*
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* @param value
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* allowed object is
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* {@link List<Synonym> }
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*
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*/
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public void setSynonyms(Set<Synonym> value) {
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this.synonyms = value;
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}
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/**
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* Adds the synonym in value to the synonyms property list.
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*
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* @param value
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* allowed object is
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* {@link Collection<Synonym> }
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*
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*/
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public void addSynonyms(Collection<Synonym> value) {
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for (Synonym synonym: value) {
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this.synonyms.add(synonym);
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}
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}
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/**
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* Gets the value of the relationships property.
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*
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* @return
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* possible object is
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* {@link Set<RelationshipBase> }
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*
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*/
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public Set<RelationshipBase> getRelationships() {
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return relationships;
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}
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/**
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* Sets the value of the relationships property.
|
409
|
*
|
410
|
* @param value
|
411
|
* allowed object is
|
412
|
* {@link Set<RelationshipBase> }
|
413
|
*
|
414
|
*/
|
415
|
public void setRelationships(Set<RelationshipBase> value) {
|
416
|
this.relationships = value;
|
417
|
}
|
418
|
|
419
|
/**
|
420
|
* Adds the relationship in value to the relationships property list.
|
421
|
*
|
422
|
* @param value
|
423
|
* allowed object is
|
424
|
* {@link Collection<RelationshipBase> }
|
425
|
*
|
426
|
*/
|
427
|
public void addRelationships(Collection<? extends RelationshipBase> value) {
|
428
|
for (RelationshipBase relationship: value) {
|
429
|
this.relationships.add(relationship);
|
430
|
}
|
431
|
}
|
432
|
|
433
|
/**
|
434
|
* Gets the value of the synonyms property.
|
435
|
*
|
436
|
* @return
|
437
|
* possible object is
|
438
|
* {@link List<Synonym> }
|
439
|
*
|
440
|
*/
|
441
|
public Set<HomotypicalGroup> getHomotypicalGroups() {
|
442
|
return homotypicalGroups;
|
443
|
}
|
444
|
|
445
|
/**
|
446
|
* Sets the value of the synonyms property.
|
447
|
*
|
448
|
* @param value
|
449
|
* allowed object is
|
450
|
* {@link List<Synonym> }
|
451
|
*
|
452
|
*/
|
453
|
public void setHomotypicalGroups(Set<HomotypicalGroup> value) {
|
454
|
this.homotypicalGroups = value;
|
455
|
}
|
456
|
|
457
|
}
|