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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.datagenerator;
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import java.util.Random;
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import java.util.UUID;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.LanguageString;
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import eu.etaxonomy.cdm.model.description.CommonTaxonName;
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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import eu.etaxonomy.cdm.model.description.TextData;
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.reference.IBook;
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import eu.etaxonomy.cdm.model.reference.IDatabase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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public class TaxonGenerator {
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private static String[] genera = {"Carex", "Abies", "Belladonna", "Dracula", "Maria", "Calendula", "Polygala", "Vincia"};
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private static String[] epitheta = {"vulgaris", "magdalena", "officinalis", "alba", "negra", "communa", "alpina", "rotundifolia", "greutheriana", "helventica", "allemania", "franca"};
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private static String[] ranks = {"subsp", "var", "f"};
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public static UUID GENUS_NAME_UUID = UUID.fromString("8d761fc4-b509-42f4-9568-244161934336");
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public static UUID GENUS_UUID = UUID.fromString("bf4298a8-1735-4353-a210-244442e1bd62");
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public static UUID BASIONYM_UUID = UUID.fromString("7911c51d-ccb7-4708-8992-639eae58a0e3");
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public static UUID SPECIES1_UUID = UUID.fromString("f0eb77d9-76e0-47f4-813f-9b5605b78685");
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public static UUID SPECIES1_NAME_UUID = UUID.fromString("efd78713-126f-42e1-9070-a1ff83f12abf");
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public static UUID SYNONYM_NAME_UUID = UUID.fromString("b9cbaa74-dbe0-4930-8050-b7754ce85dc0");
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public static UUID SPECIES2_NAME_UUID = UUID.fromString("0267ab67-483e-4da5-b654-11013b242c22");
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public static UUID SPECIES2_UUID = UUID.fromString("e20eb549-ced6-4e79-9d74-44f0792a4929");
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public static UUID SYNONYM2_NAME_UUID = UUID.fromString("7c17c811-4201-454b-8108-7be7c91c0938");
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public static UUID SPECIES5_NAME_UUID = UUID.fromString("0c6ecaac-804d-49e5-a33f-1b7ee77439e3");
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//public static UUID DESCRIPTION1_UUID = UUID.fromString("f3e061f6-c5df-465c-a253-1e18ab4c7e50");
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//public static UUID DESCRIPTION2_UUID = UUID.fromString("1b009a40-ebff-4f7e-9f7f-75a850ba995d");
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private Random rnd = new Random();
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public static Taxon getTestTaxon(){
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int descrIndex = 6000;
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Person deCandolle = Person.NewInstance();
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deCandolle.setTitleCache("DC.", true);
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Reference<?> sec = ReferenceFactory.newDatabase();
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sec.setTitleCache("Flora lunaea", true);
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Reference<?> citationRef = ReferenceFactory.newBook();
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citationRef.setTitleCache("Sp. lunarum", true);
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//genus taxon with Name, combinationAuthor,
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BotanicalName botName = BotanicalName.NewInstance(Rank.GENUS());
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botName.setTitleCache("Hieracium L.", true);
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botName.setGenusOrUninomial("Hieracium");
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botName.setCombinationAuthorTeam(Person.NewInstance());
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botName.getCombinationAuthorTeam().setNomenclaturalTitle("L.");
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botName.setUuid(GENUS_NAME_UUID);
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Taxon genusTaxon = Taxon.NewInstance(botName, sec);
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genusTaxon.setUuid(GENUS_UUID);
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//a name that is the basionym of genusTaxon's name
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BotanicalName basionym = BotanicalName.NewInstance(Rank.GENUS());
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basionym.setTitleCache("Hieracilla DC.", true);
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basionym.setGenusOrUninomial("Hieracilla");
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basionym.setCombinationAuthorTeam(deCandolle);
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basionym.setUuid(BASIONYM_UUID);
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botName.addBasionym(basionym, null, null,"216");
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//species taxon that is the child of genus taxon
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BotanicalName botSpecies = BotanicalName.NewInstance(Rank.SPECIES());
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botSpecies.setTitleCache("Hieracium asturianum Pau", true);
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botSpecies.setGenusOrUninomial("Hieracium");
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botSpecies.setSpecificEpithet("asturianum");
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botSpecies.setCombinationAuthorTeam(Person.NewInstance());
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botSpecies.getCombinationAuthorTeam().setNomenclaturalTitle("Pau");
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botSpecies.setUuid(SPECIES1_NAME_UUID);
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Taxon childTaxon = Taxon.NewInstance(botSpecies, sec);
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childTaxon.setUuid(SPECIES1_UUID);
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TaxonDescription taxDesc = getTestDescription(descrIndex++);
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//taxDesc.setUuid(DESCRIPTION1_UUID);
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childTaxon.addDescription(taxDesc);
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Classification classification = getTestClassification("TestClassification");
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classification.addParentChild(genusTaxon, childTaxon, citationRef, "456");
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// childTaxon.setTaxonomicParent(genusTaxon, citationRef, "456");
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//homotypic synonym of childTaxon1
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BotanicalName botSpecies4= BotanicalName.NewInstance(Rank.SPECIES());
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botSpecies4.setTitleCache("Hieracium gueri DC.", true);
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botSpecies4.setGenusOrUninomial("Hieracium");
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botSpecies4.setSpecificEpithet("gueri");
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botSpecies4.setCombinationAuthorTeam(deCandolle);
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botSpecies4.setUuid(SYNONYM_NAME_UUID);
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Synonym homoSynonym = Synonym.NewInstance(botSpecies4, sec);
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childTaxon.addSynonym(homoSynonym, SynonymRelationshipType.HOMOTYPIC_SYNONYM_OF());
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//2nd child species taxon that is the child of genus taxon
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BotanicalName botSpecies2= BotanicalName.NewInstance(Rank.SPECIES());
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botSpecies2.setTitleCache("Hieracium wolffii Zahn", true);
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botSpecies2.setGenusOrUninomial("Hieracium");
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botSpecies2.setSpecificEpithet("wolffii");
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botSpecies2.setCombinationAuthorTeam(Person.NewInstance());
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botSpecies2.getCombinationAuthorTeam().setNomenclaturalTitle("Zahn");
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botSpecies2.setUuid(SPECIES2_NAME_UUID);
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Taxon childTaxon2 = Taxon.NewInstance(botSpecies2, sec);
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childTaxon2.setUuid(SPECIES2_UUID);
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classification.addParentChild(genusTaxon, childTaxon2, citationRef, "499");
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//childTaxon2.setTaxonomicParent(genusTaxon, citationRef, "499");
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//heterotypic synonym of childTaxon2
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BotanicalName botSpecies3= BotanicalName.NewInstance(Rank.SPECIES());
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botSpecies3.setTitleCache("Hieracium lupium DC.", true);
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botSpecies3.setGenusOrUninomial("Hieracium");
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botSpecies3.setSpecificEpithet("lupium");
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botSpecies3.setCombinationAuthorTeam(deCandolle);
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botSpecies3.setUuid(SYNONYM2_NAME_UUID);
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Synonym heteroSynonym = Synonym.NewInstance(botSpecies3, sec);
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childTaxon2.addSynonym(heteroSynonym, SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF());
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//missaplied Name for childTaxon2
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BotanicalName missName= BotanicalName.NewInstance(Rank.SPECIES());
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missName.setTitleCache("Hieracium lupium DC.", true);
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missName.setGenusOrUninomial("Hieracium");
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missName.setSpecificEpithet("lupium");
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missName.setCombinationAuthorTeam(deCandolle);
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missName.setUuid(SPECIES5_NAME_UUID);
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Taxon misappliedName = Taxon.NewInstance(missName, sec);
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childTaxon2.addMisappliedName(misappliedName, citationRef, "125");
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taxDesc = getTestDescription(descrIndex++);
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// taxDesc.setUuid(DESCRIPTION2_UUID);
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genusTaxon.addDescription(taxDesc);
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return genusTaxon;
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}
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public static TaxonDescription getTestDescription(int index){
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TaxonDescription taxonDescription = TaxonDescription.NewInstance();
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Language language = Language.DEFAULT();
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//taxonDescription.setId(index);
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//textData
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TextData textData = TextData.NewInstance();
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String descriptionText = "this is a desciption for a taxon";
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LanguageString languageString = LanguageString.NewInstance(descriptionText, language);
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textData.putText(languageString);
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taxonDescription.addElement(textData);
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//commonName
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String commonNameString = "Schönveilchen";
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CommonTaxonName commonName = CommonTaxonName.NewInstance(commonNameString, language);
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taxonDescription.addElement(commonName);
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return taxonDescription;
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}
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public static Classification getTestClassification(String name){
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return Classification.NewInstance(name);
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}
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}
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