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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.specimen.abcd206.in;
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import java.io.InputStream;
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import java.net.URI;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.UriUtils;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.IMatchingImportConfigurator;
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import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
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import eu.etaxonomy.cdm.io.specimen.SpecimenUserInteraction;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.reference.Reference;
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/**
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* @author p.kelbert
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* @created 20.10.2008
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* @version 1.0
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*/
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public class Abcd206ImportConfigurator extends ImportConfiguratorBase<Abcd206ImportState, InputStream> implements IImportConfigurator, IMatchingImportConfigurator {
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private static final Logger logger = Logger.getLogger(Abcd206ImportConfigurator.class);
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private static String sourceReferenceTitle = null;
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private boolean parseNameAutomatically = false;
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private boolean reuseExistingMetadata = true;
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private String taxonReference = null;
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private boolean addIndividualsAssociationsSuchAsSpecimenAndObservations = true;
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private boolean reuseExistingDescriptiveGroups = false;
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private boolean reuseExistingTaxaWhenPossible = true;
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private final Map<UUID, UUID> taxonToDescriptionMap = new HashMap<UUID, UUID>();
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private Map<String, Team> titleCacheTeam;
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private Map<String, Person> titleCachePerson;
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private String defaultAuthor="";
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private boolean allowReuseOtherClassifications =true;
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private final SpecimenUserInteraction specimenUserInteraction = new SpecimenUserInteraction();
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private Map<String,UUID> namedAreaDecisions = new HashMap<String,UUID>();
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//TODO
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private static IInputTransformer defaultTransformer = null;
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private URI sourceUri;
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@Override
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@SuppressWarnings("unchecked")
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protected void makeIoClassList(){
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System.out.println("makeIOClassList");
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ioClassList = new Class[]{
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Abcd206Import.class,
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};
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};
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public static Abcd206ImportConfigurator NewInstance(URI uri,ICdmDataSource destination){
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return new Abcd206ImportConfigurator(null, uri, destination, false);
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}
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/**
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* @param uri
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* @param object
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* @param b
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* @return
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*/
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public static Abcd206ImportConfigurator NewInstance(URI uri, ICdmDataSource destination, boolean interact) {
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return new Abcd206ImportConfigurator(null, uri, destination, interact);
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}
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/**
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* @param uri
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* @param object
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* @param b
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* @return
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*/
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public static Abcd206ImportConfigurator NewInstance(InputStream stream, ICdmDataSource destination, boolean interact) {
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return new Abcd206ImportConfigurator(stream, null, destination, interact);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private Abcd206ImportConfigurator(InputStream stream, URI uri, ICdmDataSource destination, boolean interact) {
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super(defaultTransformer);
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if (stream != null){
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setSource(stream);
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}else{
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this.sourceUri = uri;
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}
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setDestination(destination);
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setSourceReferenceTitle("ABCD classic");
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setInteractWithUser(interact);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getNewState()
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*/
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@Override
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public Abcd206ImportState getNewState() {
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return new Abcd206ImportState(this);
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}
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@Override
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public InputStream getSource(){
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if (super.getSource() != null){
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return super.getSource();
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}else if (this.sourceUri != null){
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try {
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InputStream is = UriUtils.getInputStream(sourceUri);
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setSource(is);
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return is;
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} catch (Exception e) {
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throw new RuntimeException(e);
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}
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}else{
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return null;
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}
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}
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/**
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* @param file
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*/
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@Override
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public void setSource(InputStream is) {
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this.sourceUri = null;
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super.setSource(is);
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}
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public URI getSourceUri(){
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return this.sourceUri;
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}
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/**
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* @param file
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*/
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public void setSourceUri(URI sourceUri) {
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this.sourceUri = sourceUri;
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super.setSource(null);
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}
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@Override
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public String getSourceReferenceTitle(){
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return this.sourceReferenceTitle;
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}
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@Override
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public void setSourceReferenceTitle(String name){
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this.sourceReferenceTitle=name;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSourceReference()
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*/
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@Override
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public Reference getSourceReference() {
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//TODO
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return sourceReference;
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}
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public void setTaxonReference(String taxonReference) {
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this.taxonReference = taxonReference;
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}
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public Reference getTaxonReference() {
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//TODO
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if (this.taxonReference == null){
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logger.info("getTaxonReference not yet fully implemented");
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}
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return sourceReference;
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}
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public void setParseNameAutomatically(boolean doParsing){
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this.parseNameAutomatically=doParsing;
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}
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public boolean isParseNameAutomatically(){
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return this.parseNameAutomatically;
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}
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public void setReuseExistingMetadata(boolean reuseMetadata){
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this.reuseExistingMetadata = reuseMetadata;
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}
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public boolean isReUseExistingMetadata(){
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return this.reuseExistingMetadata;
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}
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public void setAddIndividualsAssociationsSuchAsSpecimenAndObservations(
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boolean doCreateIndividualsAssociations) {
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this.addIndividualsAssociationsSuchAsSpecimenAndObservations = doCreateIndividualsAssociations;
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}
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/**
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* Create an IndividualsAssociations for each determination element in the ABCD data. ABCD has no such concept as IndividualsAssociations so the only way to
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*
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* @return
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*/
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public boolean isAddIndividualsAssociationsSuchAsSpecimenAndObservations() {
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return addIndividualsAssociationsSuchAsSpecimenAndObservations;
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}
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/**
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* @param doReuseExistingDescription the doReuseExistingDescription to set
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* NOT USED YET
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*/
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public void reuseExistingDescriptiveGroups(boolean doReuseExistingDescription) {
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this.reuseExistingDescriptiveGroups = doReuseExistingDescription;
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}
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/**
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* @return the doReuseExistingDescription
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*/
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public boolean isReuseExistingDescriptiveGroups() {
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return reuseExistingDescriptiveGroups;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IMatchingImportConfigurator#isDoMatchTaxa()
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*/
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@Override
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public boolean isReuseExistingTaxaWhenPossible() {
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return reuseExistingTaxaWhenPossible;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IMatchingImportConfigurator#setDoMatchTaxa(boolean)
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*/
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@Override
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public void setReuseExistingTaxaWhenPossible(boolean doMatchTaxa) {
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this.reuseExistingTaxaWhenPossible = doMatchTaxa;
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}
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/**
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* @return
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*/
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public Map<UUID, UUID> getTaxonToDescriptionMap() {
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// TODO Auto-generated method stub
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return taxonToDescriptionMap ;
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}
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public Map<String, Team> getTeams() {
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return titleCacheTeam;
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}
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public void setTeams(Map<String, Team> titleCacheTeam) {
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this.titleCacheTeam = titleCacheTeam;
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}
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public Map<String, Person> getPersons() {
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return titleCachePerson;
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}
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public void setPersons(Map<String, Person> titleCachePerson) {
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this.titleCachePerson = titleCachePerson;
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}
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/**
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* @param string
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*/
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public void setDefaultAuthor(String string) {
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defaultAuthor=string;
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}
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public String getDefaultAuthor(){
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return defaultAuthor;
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}
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public Map<String,UUID> getNamedAreaDecisions() {
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return namedAreaDecisions;
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}
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public void setNamedAreaDecisions(Map<String,UUID> namedAreaDecisions) {
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this.namedAreaDecisions = namedAreaDecisions;
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}
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public void putNamedAreaDecision(String areaStr,UUID uuid){
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this.namedAreaDecisions.put(areaStr,uuid);
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}
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public UUID getNamedAreaDecision(String areaStr){
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return namedAreaDecisions.get(areaStr);
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}
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/**
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* @return the allowReuseOtherClassifications
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*/
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public boolean isAllowReuseOtherClassifications() {
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return allowReuseOtherClassifications;
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}
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/**
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* @param allowReuseOtherClassifications the allowReuseOtherClassifications to set
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*/
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public void setAllowReuseOtherClassifications(boolean allowReuseOtherClassifications) {
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this.allowReuseOtherClassifications = allowReuseOtherClassifications;
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}
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/**
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* @return the specimenUserInteraction
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*/
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public SpecimenUserInteraction getSpecimenUserInteraction() {
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return specimenUserInteraction;
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}
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}
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