EDIT

/**

 * Copyright (C) 2007 EDIT

 * European Distributed Institute of Taxonomy

 * http://www.e-taxonomy.eu

 *

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.api.application;

import javax.sql.DataSource;

import org.apache.log4j.Logger;

import org.hibernate.HibernateException;

import org.hibernate.Session;

import org.hibernate.SessionFactory;

import org.springframework.beans.BeansException;

import org.springframework.beans.factory.annotation.Autowired;

import org.springframework.context.ApplicationContext;

import org.springframework.context.ApplicationContextAware;

import org.springframework.context.annotation.Lazy;

import org.springframework.orm.hibernate5.HibernateTransactionManager;

import org.springframework.security.authentication.ProviderManager;

import org.springframework.security.authentication.UsernamePasswordAuthenticationToken;

import org.springframework.security.core.Authentication;

import org.springframework.security.core.context.SecurityContext;

import org.springframework.security.core.context.SecurityContextHolder;

import org.springframework.stereotype.Component;

import org.springframework.transaction.PlatformTransactionManager;

import org.springframework.transaction.TransactionDefinition;

import org.springframework.transaction.TransactionStatus;

import org.springframework.transaction.support.DefaultTransactionDefinition;

import eu.etaxonomy.cdm.api.conversation.ConversationHolder;

import eu.etaxonomy.cdm.api.service.IAgentService;

import eu.etaxonomy.cdm.api.service.IAnnotationService;

import eu.etaxonomy.cdm.api.service.IClassificationService;

import eu.etaxonomy.cdm.api.service.ICollectionService;

import eu.etaxonomy.cdm.api.service.ICommonService;

import eu.etaxonomy.cdm.api.service.IDatabaseService;

import eu.etaxonomy.cdm.api.service.IDescriptionService;

import eu.etaxonomy.cdm.api.service.IDescriptiveDataSetService;

import eu.etaxonomy.cdm.api.service.IEntityConstraintViolationService;

import eu.etaxonomy.cdm.api.service.IEntityValidationService;

import eu.etaxonomy.cdm.api.service.IEventBaseService;

import eu.etaxonomy.cdm.api.service.IFeatureNodeService;

import eu.etaxonomy.cdm.api.service.IFeatureTreeService;

import eu.etaxonomy.cdm.api.service.IGrantedAuthorityService;

import eu.etaxonomy.cdm.api.service.IGroupService;

import eu.etaxonomy.cdm.api.service.IIdentificationKeyService;

import eu.etaxonomy.cdm.api.service.ILocationService;

import eu.etaxonomy.cdm.api.service.IMediaService;

import eu.etaxonomy.cdm.api.service.IMetadataService;

import eu.etaxonomy.cdm.api.service.INameService;

import eu.etaxonomy.cdm.api.service.IOccurrenceService;

import eu.etaxonomy.cdm.api.service.IPolytomousKeyNodeService;

import eu.etaxonomy.cdm.api.service.IPolytomousKeyService;

import eu.etaxonomy.cdm.api.service.IPreferenceService;

import eu.etaxonomy.cdm.api.service.IProgressMonitorService;

import eu.etaxonomy.cdm.api.service.IReferenceService;

import eu.etaxonomy.cdm.api.service.IRegistrationService;

import eu.etaxonomy.cdm.api.service.IRightsService;

import eu.etaxonomy.cdm.api.service.ITaxonNodeService;

import eu.etaxonomy.cdm.api.service.ITaxonService;

import eu.etaxonomy.cdm.api.service.ITermNodeService;

import eu.etaxonomy.cdm.api.service.ITermService;

import eu.etaxonomy.cdm.api.service.ITermTreeService;

import eu.etaxonomy.cdm.api.service.IUserService;

import eu.etaxonomy.cdm.api.service.IVocabularyService;

import eu.etaxonomy.cdm.api.service.longrunningService.ILongRunningTasksService;

import eu.etaxonomy.cdm.api.service.molecular.IAmplificationService;

import eu.etaxonomy.cdm.api.service.molecular.IPrimerService;

import eu.etaxonomy.cdm.api.service.molecular.ISequenceService;

import eu.etaxonomy.cdm.persistence.hibernate.permission.ICdmPermissionEvaluator;

/**

 * This class actually is the central access point to all cdm api services and thus to all the

 * entities stored in the cdm. From this point of view this class provides a "repository" view

 * on the cdm by which you can access everything important for client development.

 *

 * @author a.mueller

 * @since 21.05.2008

 */

@Component

public class CdmRepository implements ICdmRepository, ApplicationContextAware {

    private static final Logger logger = Logger.getLogger(CdmRepository.class);

	protected ApplicationContext applicationContext;

	@Autowired

    //@Qualifier("nameService")

    private IAnnotationService annotationService;

	@Autowired

	//@Qualifier("nameService")

	private INameService nameService;

	@Autowired

	//@Qualifier("taxonService")

	private ITaxonService taxonService;

	@Autowired

	//@Qualifier("classificationService")

	private IClassificationService classificationService;

	@Autowired

	//@Qualifier("referenceService")

	private IReferenceService referenceService;

	@Autowired

	//@Qualifier("agentService")

	private IAgentService agentService;

	@Autowired

	//@Qualifier("databaseService")

	private IDatabaseService databaseService;

	@Autowired

	//@Qualifier("termService")

	private ITermService termService;

	//@Autowired

	private HibernateTransactionManager transactionManager;

	@Autowired

	//@Qualifier("descriptionService")

	private IDescriptionService descriptionService;

	@Autowired

	//@Qualifier("occurrenceService")

	private IOccurrenceService occurrenceService;

	@Autowired

	//@Qualifier("primerService")

	private IPrimerService primerService;

	@Autowired

	//@Qualifier("amplificationService")

	private IAmplificationService amplificationService;

	@Autowired

	//@Qualifier("sequenceService")

	private ISequenceService sequenceService;

	@Autowired

	//@Qualifier("eventBaseService")

	private IEventBaseService eventBaseService;

	@Autowired

	//@Qualifier("mediaService")

	private IMediaService mediaService;

    @Autowired

    //@Qualifier("mediaService")

    private IMetadataService metadataService;

	@Autowired

	//@Qualifier("commonService")

	private ICommonService commonService;

	@Autowired

	private ILocationService locationService;

	//@Autowired

	private SessionFactory sessionFactory;

	//@Autowired

	private DataSource dataSource;

	@Autowired

	@Lazy

	private ProviderManager authenticationManager;

	@Autowired

	private IUserService userService;

	@Autowired

	private IGrantedAuthorityService grantedAuthorityService;

	@Autowired

	private IGroupService groupService;

	@Autowired

	private ICollectionService collectionService;

	@Autowired

	private IFeatureTreeService featureTreeService;

	@Autowired

	private IFeatureNodeService featureNodeService;

	@Autowired

	private ITermTreeService termTreeService;

	@Autowired

	private ITermNodeService termNodeService;

	@Autowired

	private IVocabularyService vocabularyService;

	@Autowired

	private ITaxonNodeService taxonNodeService;

	@Autowired

	private IIdentificationKeyService identificationKeyService;

	@Autowired

	private IPolytomousKeyService polytomousKeyService;

	@Autowired

	private IPolytomousKeyNodeService polytomousKeyNodeService;

	@Autowired

	private IProgressMonitorService progressMonitorService;

	@Autowired

	private IEntityValidationService entityValidationService;

	@Autowired

    private IPreferenceService preferenceService;

	@Autowired

    private IRightsService rightsService;

    @Autowired

    private IRegistrationService registrationService;

    @Autowired

    private ILongRunningTasksService longRunningTasksService;

	@Autowired

	private IEntityConstraintViolationService entityConstraintViolationService;

	@Autowired

	private ICdmPermissionEvaluator permissionEvaluator;

	@Autowired

    private SessionFactory factory;

	@Autowired

	private IDescriptiveDataSetService descriptiveDataSetService;

	//********************** CONSTRUCTOR *********************************************************/

	/**

	 * Constructor

	 */

	protected CdmRepository(){}

	// ****************************** APPLICATION CONTEXT *************************************************/

	@Override

	public void setApplicationContext(ApplicationContext applicationContext) throws BeansException{

		this.applicationContext = applicationContext;

	}

	// ****************************** GETTER *************************************************/

	@Override

	public final Object getBean(String name){

	    return this.applicationContext.getBean(name);

	}

	@Override

	public IAnnotationService getAnnotationService(){

	    return this.annotationService;

	}

	@Override

	public IAgentService getAgentService(){

		return this.agentService;

	}

	@Override

	public IDatabaseService getDatabaseService(){

		return this.databaseService;

	}

	@Autowired

	public void setDataSource(DataSource dataSource){

		this.dataSource = dataSource;

	}

	@Override

	public INameService getNameService(){

		return this.nameService;

	}

	@Override

	public IReferenceService getReferenceService(){

		return this.referenceService;

	}

	@Autowired

	public void setSessionFactory(SessionFactory sessionFactory){

		this.sessionFactory = sessionFactory;

	}

	@Override

	public ITaxonService getTaxonService(){

		return this.taxonService;

	}

	@Override

	public IClassificationService getClassificationService(){

		return this.classificationService;

	}

	@Override

	public ITaxonNodeService getTaxonNodeService(){

		return this.taxonNodeService;

	}

	@Override

	public IDescriptionService getDescriptionService(){

		return this.descriptionService;

	}

	@Override

	public IOccurrenceService getOccurrenceService(){

		return this.occurrenceService;

	}

	@Override

	public IPrimerService getPrimerService(){

		return this.primerService;

	}

	@Override

	public IAmplificationService getAmplificationService(){

		return this.amplificationService;

	}

	@Override

	public ISequenceService getSequenceService(){

		return this.sequenceService;

	}

	@Override

	public IEventBaseService getEventBaseService() {

	    return this.eventBaseService;

	}

	@Override

	public IMediaService getMediaService(){

		return this.mediaService;

	}

    /**

     * {@inheritDoc}

     */

    @Override

    public IMetadataService getMetadataService() {

        return this.metadataService;

    }

	@Override

	public ITermService getTermService(){

		return this.termService;

	}

	@Override

	public ICommonService getCommonService(){

		return this.commonService;

	}

	@Override

	public ILocationService getLocationService(){

		return this.locationService;

	}

	@Override

	public IUserService getUserService(){

		return this.userService;

	}

	@Override

	public IGrantedAuthorityService getGrantedAuthorityService(){

		return this.grantedAuthorityService;

	}

	@Override

	public PlatformTransactionManager getTransactionManager(){

		return this.transactionManager;

	}

	@Autowired

	public void setTransactionManager(PlatformTransactionManager transactionManager){

		this.transactionManager = (HibernateTransactionManager) transactionManager;

	}

	@Override

	public ProviderManager getAuthenticationManager(){

		return this.authenticationManager;

	}

	@Override

	public ConversationHolder NewConversation(){

		// TODO make this a prototype

		return new ConversationHolder(dataSource, sessionFactory, transactionManager);

	}

	@Override

	public ICollectionService getCollectionService(){

		return collectionService;

	}

	@Override

	public IFeatureTreeService getFeatureTreeService(){

		return featureTreeService;

	}

	@Override

	public ITermTreeService getTermTreeService(){

	    return termTreeService;

	}

	@Override

	public IFeatureNodeService getFeatureNodeService(){

		return featureNodeService;

	}

    @Override

    public ITermNodeService getTermNodeService(){

        return termNodeService;

    }

	@Override

    public IPreferenceService getPreferenceService(){

        return preferenceService;

    }

	@Override

	public IVocabularyService getVocabularyService(){

		return vocabularyService;

	}

	@Override

	public IIdentificationKeyService getIdentificationKeyService(){

		return identificationKeyService;

	}

	@Override

	public IPolytomousKeyService getPolytomousKeyService(){

		return polytomousKeyService;

	}

	@Override

	public IPolytomousKeyNodeService getPolytomousKeyNodeService(){

		return polytomousKeyNodeService;

	}

    /**

     * {@inheritDoc}

     */

    @Override

    public IProgressMonitorService getProgressMonitorService() {

        return progressMonitorService;

    }

	@Override

	public IDescriptiveDataSetService getDescriptiveDataSetService(){

		return descriptiveDataSetService;

	}

	@Override

	public IGroupService getGroupService(){

		return groupService;

	}

	@Override

	public IEntityValidationService getEntityValidationService(){

		return entityValidationService;

	}

	@Override

	public IEntityConstraintViolationService getEntityConstraintViolationService(){

		return entityConstraintViolationService;

	}

	@Override

	public ICdmPermissionEvaluator getPermissionEvaluator(){

		return permissionEvaluator;

	}

	@Override

	public TransactionStatus startTransaction(){

		return startTransaction(false);

	}

	@Override

	public TransactionStatus startTransaction(Boolean readOnly){

		PlatformTransactionManager txManager = getTransactionManager();

		DefaultTransactionDefinition defaultTxDef = new DefaultTransactionDefinition();

		defaultTxDef.setReadOnly(readOnly);

		TransactionDefinition txDef = defaultTxDef;

		// Log some transaction-related debug information.

		if (logger.isDebugEnabled()) {

			logger.debug("Transaction name = " + txDef.getName());

			logger.debug("Transaction facets:");

			logger.debug("Propagation behavior = " + txDef.getPropagationBehavior());

			logger.debug("Isolation level = " + txDef.getIsolationLevel());

			logger.debug("Timeout = " + txDef.getTimeout());

			logger.debug("Read Only = " + txDef.isReadOnly());

			// org.springframework.orm.hibernate5.HibernateTransactionManager

			// provides more transaction/session-related debug information.

		}

		TransactionStatus txStatus = txManager.getTransaction(txDef);

		return txStatus;

	}

	@Override

	public void commitTransaction(TransactionStatus txStatus){

		PlatformTransactionManager txManager = getTransactionManager();

		txManager.commit(txStatus);

		return;

	}

    @Override

    public void rollbackTransaction(TransactionStatus txStatus){

        PlatformTransactionManager txManager = getTransactionManager();

        txManager.rollback(txStatus);

        return;

    }

	@Override

	public void authenticate(String username, String password){

		UsernamePasswordAuthenticationToken tokenForUser = new UsernamePasswordAuthenticationToken(username, password);

		Authentication authentication = this.getAuthenticationManager().authenticate(tokenForUser);

		SecurityContext context = SecurityContextHolder.getContext();

		context.setAuthentication(authentication);

	}

    @Override

    public IRightsService getRightsService() {

        return rightsService;

    }

    @Override

    public IRegistrationService getRegistrationService() {

        return registrationService;

    }

    @Override

	public ILongRunningTasksService getLongRunningTasksService() {

		return longRunningTasksService;

	}

    public SessionFactory getSessionFactory() {

        return factory;

    }

    /**

     * Returns the current session as obtained from the session factory.

     *

     * @throws HibernateException

     *             In case a session bound to the current thread cannot be found

     * @return the session bound to the current thread

     */

    public Session getSession() throws HibernateException {

        return factory.getCurrentSession();

    }

    /**

     * clears the current Session

     */

    public void clearSession() {

        try {

            getSession().clear();

        } catch (HibernateException e) {

            // no current session: nothing to clear!

        }

    }

}