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9479da48
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Andreas Müller
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.description;
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6b8f5129
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Andreas Müller
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import java.util.HashSet;
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1016f650
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Andreas Müller
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import java.util.List;
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f6765014
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ben.clark
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import java.util.Map;
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6b8f5129
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Andreas Müller
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import java.util.Set;
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import java.util.UUID;
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de3e2329
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Andreas Müller
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6b8f5129
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Andreas Müller
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import javax.persistence.Entity;
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f6765014
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ben.clark
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import javax.persistence.FetchType;
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c5e86e43
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a.babadshanjan
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import javax.persistence.JoinTable;
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import javax.persistence.ManyToMany;
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6b8f5129
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Andreas Müller
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import javax.persistence.OneToMany;
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4393fcb0
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a.babadshanjan
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlElement;
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import javax.xml.bind.annotation.XmlElementWrapper;
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import javax.xml.bind.annotation.XmlIDREF;
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import javax.xml.bind.annotation.XmlRootElement;
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import javax.xml.bind.annotation.XmlSchemaType;
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6b8f5129
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Andreas Müller
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import javax.xml.bind.annotation.XmlType;
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9479da48
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Andreas Müller
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6b8f5129
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Andreas Müller
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import org.apache.log4j.Logger;
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ee91bcd9
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ben.clark
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import org.hibernate.envers.Audited;
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fd7ee7b1
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ben.clark
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import org.hibernate.search.annotations.Indexed;
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9479da48
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Andreas Müller
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6b8f5129
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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1016f650
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.Language;
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6b8f5129
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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4daf2f37
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m.geoffroy
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.occurrence.Specimen;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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9479da48
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Andreas Müller
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/**
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4daf2f37
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m.geoffroy
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* The class for individual properties (also designed as character, type or
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* category) of observed phenomena able to be described or measured. It also
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* covers categories of informations on {@link TaxonNameBase taxon names} not
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* taken in account in {@link NomenclaturalCode nomenclature}.<BR>
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* Descriptions require features in order to be structured and disaggregated
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* in {@link DescriptionElementBase description elements}.<BR>
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b22e4839
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m.geoffroy
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* Experts do not use the word feature for the actual description
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* but only for the property itself. Therefore naming this class FeatureType
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4daf2f37
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m.geoffroy
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* would have leaded to confusion.
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* <P>
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509b132a
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m.geoffroy
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* Since features are {@link DefinedTermBase defined terms} they have a hierarchical
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* structure that allows to specify ("kind of") or generalize
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* ("generalization of") features. "Kind of" / "generalization of" relations
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* are bidirectional (a feature F1 is a "Kind of" a feature F2 if and only
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* if the feature F2 is a "generalization of" the feature F1. This hierarchical
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* structure has nothing in common with {@link FeatureTree feature trees} used for determination.
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* <P>
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4daf2f37
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m.geoffroy
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* A standard set of feature instances will be automatically
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* created as the project starts. But this class allows to extend this standard
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* set by creating new instances of additional features if needed.<BR>
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* <P>
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* This class corresponds to DescriptionsSectionType according to the SDD
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* schema.
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*
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9479da48
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Andreas Müller
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* @author m.doering
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* @version 1.0
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* @created 08-Nov-2007 13:06:24
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*/
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c9866164
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ben.clark
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@XmlAccessorType(XmlAccessType.PROPERTY)
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4393fcb0
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a.babadshanjan
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@XmlType(name="Feature", factoryMethod="NewInstance", propOrder = {
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c9866164
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ben.clark
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"kindOf",
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"generalizationOf",
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"partOf",
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"includes",
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4393fcb0
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a.babadshanjan
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"supportsTextData",
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"supportsQuantitativeData",
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"supportsDistribution",
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"supportsIndividualAssociation",
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"supportsTaxonInteraction",
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"supportsCommonTaxonName",
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3190e7d8
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ben.clark
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"supportsCategoricalData",
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4393fcb0
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a.babadshanjan
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"recommendedModifierEnumeration",
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"recommendedStatisticalMeasures",
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52931327
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h.fradin
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"supportedCategoricalEnumerations",
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"recommendedMeasurementUnits"
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4393fcb0
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a.babadshanjan
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})
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@XmlRootElement(name = "Feature")
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9479da48
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Andreas Müller
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@Entity
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fd7ee7b1
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ben.clark
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@Indexed(index = "eu.etaxonomy.cdm.model.common.DefinedTermBase")
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ee91bcd9
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ben.clark
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@Audited
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03abbcde
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Andreas Müller
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public class Feature extends DefinedTermBase<Feature> {
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private static final long serialVersionUID = 6754598791831848704L;
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private static final Logger logger = Logger.getLogger(Feature.class);
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f6765014
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ben.clark
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private static Feature IMAGE;
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private static Feature CULTIVATION;
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private static Feature CONSERVATION;
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private static Feature USES;
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private static Feature ADDITIONAL_PUBLICATION;
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private static Feature CITATION;
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private static Feature OCCURRENCE;
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private static Feature PHENOLOGY;
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private static Feature COMMON_NAME;
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private static Feature PROTOLOG;
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private static Feature INTRODUCTION;
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private static Feature DIAGNOSIS;
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private static Feature ETYMOLOGY;
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private static Feature MATERIALS_METHODS;
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private static Feature MATERIALS_EXAMINED;
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private static Feature KEY;
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private static Feature BIOLOGY_ECOLOGY;
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private static Feature ECOLOGY;
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private static Feature DISCUSSION;
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private static Feature DISTRIBUTION;
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private static Feature DESCRIPTION;
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private static Feature UNKNOWN;
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9479da48
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Andreas Müller
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4393fcb0
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a.babadshanjan
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@XmlElement(name = "SupportsTextData")
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9479da48
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Andreas Müller
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private boolean supportsTextData;
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4393fcb0
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a.babadshanjan
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@XmlElement(name = "SupportsQuantitativeData")
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1016f650
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Andreas Müller
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private boolean supportsQuantitativeData;
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4393fcb0
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a.babadshanjan
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@XmlElement(name = "SupportsDistribution")
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9479da48
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Andreas Müller
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private boolean supportsDistribution;
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4393fcb0
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a.babadshanjan
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@XmlElement(name = "SupportsIndividualAssociation")
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9479da48
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Andreas Müller
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private boolean supportsIndividualAssociation;
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4393fcb0
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a.babadshanjan
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@XmlElement(name = "SupportsTaxonInteraction")
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9479da48
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Andreas Müller
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private boolean supportsTaxonInteraction;
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4393fcb0
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a.babadshanjan
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b2231758
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h.fradin
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@XmlElement(name = "SupportsCategoricalData")
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private boolean supportsCategoricalData;
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4393fcb0
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a.babadshanjan
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ee91bcd9
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ben.clark
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/*
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* FIXME Should this be Many-To-Many or do we expect each Feature to have its own unique modifier enums?
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*/
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4393fcb0
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a.babadshanjan
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@XmlElementWrapper(name = "RecommendedModifierEnumerations")
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@XmlElement(name = "RecommendedModifierEnumeration")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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ee91bcd9
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ben.clark
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@OneToMany(fetch = FetchType.LAZY)
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@JoinTable(name="DefinedTermBase_RecommendedModifierEnumeration")
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f6765014
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ben.clark
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private Set<TermVocabulary<Modifier>> recommendedModifierEnumeration = new HashSet<TermVocabulary<Modifier>>();
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4393fcb0
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a.babadshanjan
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@XmlElementWrapper(name = "RecommendedStatisticalMeasures")
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@XmlElement(name = "RecommendedStatisticalMeasure")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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ee91bcd9
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ben.clark
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@ManyToMany(fetch = FetchType.LAZY)
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@JoinTable(name="DefinedTermBase_StatisticalMeasure")
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b484eedb
|
Andreas Müller
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private Set<StatisticalMeasure> recommendedStatisticalMeasures = new HashSet<StatisticalMeasure>();
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4393fcb0
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a.babadshanjan
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ee91bcd9
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ben.clark
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/*
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* FIXME Should this be Many-To-Many or do we expect each Feature to have its own unique state enums?
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*/
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4393fcb0
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a.babadshanjan
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@XmlElementWrapper(name = "SupportedCategoricalEnumerations")
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@XmlElement(name = "SupportedCategoricalEnumeration")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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ee91bcd9
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ben.clark
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@OneToMany(fetch = FetchType.LAZY)
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@JoinTable(name="DefinedTermBase_SupportedCategoricalEnumeration")
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f6765014
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ben.clark
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private Set<TermVocabulary<State>> supportedCategoricalEnumerations = new HashSet<TermVocabulary<State>>();
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b2231758
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h.fradin
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@XmlElement(name = "SupportsCommonTaxonName")
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private boolean supportsCommonTaxonName;
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d80a0479
|
Andreas Müller
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52931327
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h.fradin
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@XmlElementWrapper(name = "RecommendedMeasurementUnits")
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@XmlElement(name = "RecommendedMeasurementUnit")
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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@ManyToMany(fetch = FetchType.LAZY)
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@JoinTable(name="DefinedTermBase_MeasurementUnit")
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private Set<MeasurementUnit> recommendedMeasurementUnits = new HashSet<MeasurementUnit>();
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d80a0479
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Andreas Müller
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/* ***************** CONSTRUCTOR AND FACTORY METHODS **********************************/
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efaea755
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a.babadshanjan
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4daf2f37
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m.geoffroy
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/**
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* Class constructor: creates a new empty feature instance.
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*
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* @see #Feature(String, String, String)
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efaea755
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a.babadshanjan
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*/
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de3e2329
|
Andreas Müller
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public Feature() {
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d80a0479
|
Andreas Müller
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super();
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}
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4daf2f37
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m.geoffroy
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/**
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* Class constructor: creates a new feature instance with a description (in the {@link Language#DEFAULT() default language}),
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* a label and a label abbreviation.
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*
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* @param term the string (in the default language) describing the
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* new feature to be created
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* @param label the string identifying the new feature to be created
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* @param labelAbbrev the string identifying (in abbreviated form) the
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* new feature to be created
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* @see #Feature()
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*/
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41b23b4e
|
Andreas Müller
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protected Feature(String term, String label, String labelAbbrev) {
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super(term, label, labelAbbrev);
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9479da48
|
Andreas Müller
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}
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4daf2f37
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m.geoffroy
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/**
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* Creates a new empty feature instance.
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*
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* @see #NewInstance(String, String, String)
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*/
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public static Feature NewInstance() {
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return new Feature();
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}
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/**
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* Creates a new feature instance with a description (in the {@link Language#DEFAULT() default language}),
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* a label and a label abbreviation.
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*
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* @param term the string (in the default language) describing the
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* new feature to be created
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* @param label the string identifying the new feature to be created
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* @param labelAbbrev the string identifying (in abbreviated form) the
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* new feature to be created
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* @see #readCsvLine(List, Language)
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* @see #NewInstance()
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*/
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public static Feature NewInstance(String term, String label, String labelAbbrev){
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return new Feature(term, label, labelAbbrev);
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}
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234 |
d80a0479
|
Andreas Müller
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/* *************************************************************************************/
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235 |
4daf2f37
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m.geoffroy
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/**
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* Returns the boolean value of the flag indicating whether <i>this</i>
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* feature can be described with {@link QuantitativeData quantitative data} (true)
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* or not (false). If this flag is set <i>this</i> feature can only apply to
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* {@link TaxonDescription taxon descriptions} or {@link SpecimenDescription specimen descriptions}.
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*
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* @return the boolean value of the supportsQuantitativeData flag
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*/
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244 |
ee91bcd9
|
ben.clark
|
public boolean supportsQuantitativeData() {
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245 |
9479da48
|
Andreas Müller
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return supportsQuantitativeData;
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}
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248 |
4daf2f37
|
m.geoffroy
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/**
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* @see #isSupportsQuantitativeData()
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*/
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251 |
9479da48
|
Andreas Müller
|
public void setSupportsQuantitativeData(boolean supportsQuantitativeData) {
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this.supportsQuantitativeData = supportsQuantitativeData;
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}
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255 |
4daf2f37
|
m.geoffroy
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/**
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* Returns the boolean value of the flag indicating whether <i>this</i>
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* feature can be described with {@link TextData text data} (true)
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* or not (false).
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*
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* @return the boolean value of the supportsTextData flag
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*/
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262 |
ee91bcd9
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ben.clark
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public boolean supportsTextData() {
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263 |
9479da48
|
Andreas Müller
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return supportsTextData;
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}
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266 |
4daf2f37
|
m.geoffroy
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/**
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* @see #isSupportsTextData()
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*/
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269 |
9479da48
|
Andreas Müller
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public void setSupportsTextData(boolean supportsTextData) {
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this.supportsTextData = supportsTextData;
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}
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4daf2f37
|
m.geoffroy
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/**
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* Returns the boolean value of the flag indicating whether <i>this</i>
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* feature can be described with {@link Distribution distribution} objects
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* (true) or not (false). This flag is set if and only if <i>this</i> feature
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* is the {@link #DISTRIBUTION() distribution feature}.
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*
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* @return the boolean value of the supportsDistribution flag
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*/
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281 |
ee91bcd9
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ben.clark
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public boolean supportsDistribution() {
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282 |
9479da48
|
Andreas Müller
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return supportsDistribution;
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}
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4daf2f37
|
m.geoffroy
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/**
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* @see #isSupportsDistribution()
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*/
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288 |
9479da48
|
Andreas Müller
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public void setSupportsDistribution(boolean supportsDistribution) {
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this.supportsDistribution = supportsDistribution;
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}
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4daf2f37
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m.geoffroy
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/**
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* Returns the boolean value of the flag indicating whether <i>this</i>
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|
* feature can be described with {@link IndividualsAssociation individuals associations}
|
295 |
|
|
* (true) or not (false).
|
296 |
|
|
*
|
297 |
|
|
* @return the boolean value of the supportsIndividualAssociation flag
|
298 |
|
|
*/
|
299 |
ee91bcd9
|
ben.clark
|
public boolean supportsIndividualAssociation() {
|
300 |
9479da48
|
Andreas Müller
|
return supportsIndividualAssociation;
|
301 |
|
|
}
|
302 |
|
|
|
303 |
4daf2f37
|
m.geoffroy
|
/**
|
304 |
|
|
* @see #isSupportsIndividualAssociation()
|
305 |
|
|
*/
|
306 |
9479da48
|
Andreas Müller
|
public void setSupportsIndividualAssociation(
|
307 |
|
|
boolean supportsIndividualAssociation) {
|
308 |
|
|
this.supportsIndividualAssociation = supportsIndividualAssociation;
|
309 |
|
|
}
|
310 |
|
|
|
311 |
4daf2f37
|
m.geoffroy
|
/**
|
312 |
|
|
* Returns the boolean value of the flag indicating whether <i>this</i>
|
313 |
|
|
* feature can be described with {@link TaxonInteraction taxon interactions}
|
314 |
|
|
* (true) or not (false).
|
315 |
|
|
*
|
316 |
|
|
* @return the boolean value of the supportsTaxonInteraction flag
|
317 |
|
|
*/
|
318 |
ee91bcd9
|
ben.clark
|
public boolean supportsTaxonInteraction() {
|
319 |
9479da48
|
Andreas Müller
|
return supportsTaxonInteraction;
|
320 |
|
|
}
|
321 |
|
|
|
322 |
4daf2f37
|
m.geoffroy
|
/**
|
323 |
|
|
* @see #isSupportsTaxonInteraction()
|
324 |
|
|
*/
|
325 |
9479da48
|
Andreas Müller
|
public void setSupportsTaxonInteraction(boolean supportsTaxonInteraction) {
|
326 |
|
|
this.supportsTaxonInteraction = supportsTaxonInteraction;
|
327 |
|
|
}
|
328 |
|
|
|
329 |
4daf2f37
|
m.geoffroy
|
/**
|
330 |
|
|
* Returns the boolean value of the flag indicating whether <i>this</i>
|
331 |
|
|
* feature can be described with {@link CommonTaxonName common names}
|
332 |
|
|
* (true) or not (false). This flag is set if and only if <i>this</i> feature
|
333 |
|
|
* is the {@link #COMMON_NAME() common name feature}.
|
334 |
|
|
*
|
335 |
|
|
* @return the boolean value of the supportsCommonTaxonName flag
|
336 |
|
|
*/
|
337 |
ee91bcd9
|
ben.clark
|
public boolean supportsCommonTaxonName() {
|
338 |
9479da48
|
Andreas Müller
|
return supportsCommonTaxonName;
|
339 |
|
|
}
|
340 |
|
|
|
341 |
4daf2f37
|
m.geoffroy
|
/**
|
342 |
|
|
* @see #isSupportsTaxonInteraction()
|
343 |
|
|
*/
|
344 |
9479da48
|
Andreas Müller
|
public void setSupportsCommonTaxonName(boolean supportsCommonTaxonName) {
|
345 |
|
|
this.supportsCommonTaxonName = supportsCommonTaxonName;
|
346 |
|
|
}
|
347 |
|
|
|
348 |
b2231758
|
h.fradin
|
/**
|
349 |
|
|
* Returns the boolean value of the flag indicating whether <i>this</i>
|
350 |
|
|
* feature can be described with {@link CategoricalData categorical data}
|
351 |
|
|
* (true) or not (false).
|
352 |
|
|
*
|
353 |
|
|
* @return the boolean value of the supportsCategoricalData flag
|
354 |
|
|
*/
|
355 |
fd7ee7b1
|
ben.clark
|
public boolean supportsCategoricalData() {
|
356 |
b2231758
|
h.fradin
|
return supportsCategoricalData;
|
357 |
|
|
}
|
358 |
|
|
|
359 |
|
|
/**
|
360 |
fd7ee7b1
|
ben.clark
|
* @see #supportsCategoricalData()
|
361 |
b2231758
|
h.fradin
|
*/
|
362 |
|
|
public void setSupportsCategoricalData(boolean supportsCategoricalData) {
|
363 |
|
|
this.supportsCategoricalData = supportsCategoricalData;
|
364 |
|
|
}
|
365 |
|
|
|
366 |
|
|
|
367 |
4daf2f37
|
m.geoffroy
|
/**
|
368 |
|
|
* Returns the set of {@link TermVocabulary term vocabularies} containing the
|
369 |
|
|
* {@link Modifier modifiers} recommended to be used for {@link DescriptionElementBase description elements}
|
370 |
|
|
* with <i>this</i> feature.
|
371 |
f6765014
|
ben.clark
|
*
|
372 |
4daf2f37
|
m.geoffroy
|
*/
|
373 |
f6765014
|
ben.clark
|
public Set<TermVocabulary<Modifier>> getRecommendedModifierEnumeration() {
|
374 |
9479da48
|
Andreas Müller
|
return recommendedModifierEnumeration;
|
375 |
|
|
}
|
376 |
|
|
|
377 |
4daf2f37
|
m.geoffroy
|
/**
|
378 |
|
|
* Adds a {@link TermVocabulary term vocabulary} (with {@link Modifier modifiers}) to the set of
|
379 |
|
|
* {@link #getRecommendedModifierEnumeration() recommended modifier vocabularies} assigned
|
380 |
|
|
* to <i>this</i> feature.
|
381 |
|
|
*
|
382 |
|
|
* @param recommendedModifierEnumeration the term vocabulary to be added
|
383 |
|
|
* @see #getRecommendedModifierEnumeration()
|
384 |
|
|
*/
|
385 |
9479da48
|
Andreas Müller
|
public void addRecommendedModifierEnumeration(
|
386 |
f6765014
|
ben.clark
|
TermVocabulary<Modifier> recommendedModifierEnumeration) {
|
387 |
9479da48
|
Andreas Müller
|
this.recommendedModifierEnumeration.add(recommendedModifierEnumeration);
|
388 |
|
|
}
|
389 |
4daf2f37
|
m.geoffroy
|
/**
|
390 |
|
|
* Removes one element from the set of {@link #getRecommendedModifierEnumeration() recommended modifier vocabularies}
|
391 |
|
|
* assigned to <i>this</i> feature.
|
392 |
|
|
*
|
393 |
|
|
* @param recommendedModifierEnumeration the term vocabulary which should be removed
|
394 |
|
|
* @see #getRecommendedModifierEnumeration()
|
395 |
|
|
* @see #addRecommendedModifierEnumeration(TermVocabulary)
|
396 |
|
|
*/
|
397 |
9479da48
|
Andreas Müller
|
public void removeRecommendedModifierEnumeration(
|
398 |
f6765014
|
ben.clark
|
TermVocabulary<Modifier> recommendedModifierEnumeration) {
|
399 |
9479da48
|
Andreas Müller
|
this.recommendedModifierEnumeration.remove(recommendedModifierEnumeration);
|
400 |
|
|
}
|
401 |
|
|
|
402 |
4daf2f37
|
m.geoffroy
|
/**
|
403 |
|
|
* Returns the set of {@link StatisticalMeasure statistical measures} recommended to be used
|
404 |
|
|
* in case of {@link QuantitativeData quantitative data} with <i>this</i> feature.
|
405 |
|
|
*/
|
406 |
9479da48
|
Andreas Müller
|
public Set<StatisticalMeasure> getRecommendedStatisticalMeasures() {
|
407 |
|
|
return recommendedStatisticalMeasures;
|
408 |
|
|
}
|
409 |
|
|
|
410 |
4daf2f37
|
m.geoffroy
|
/**
|
411 |
|
|
* Adds a {@link StatisticalMeasure statistical measure} to the set of
|
412 |
|
|
* {@link #getRecommendedStatisticalMeasures() recommended statistical measures} assigned
|
413 |
|
|
* to <i>this</i> feature.
|
414 |
|
|
*
|
415 |
|
|
* @param recommendedStatisticalMeasure the statistical measure to be added
|
416 |
|
|
* @see #getRecommendedStatisticalMeasures()
|
417 |
|
|
*/
|
418 |
9479da48
|
Andreas Müller
|
public void addRecommendedStatisticalMeasure(
|
419 |
|
|
StatisticalMeasure recommendedStatisticalMeasure) {
|
420 |
|
|
this.recommendedStatisticalMeasures.add(recommendedStatisticalMeasure);
|
421 |
|
|
}
|
422 |
4daf2f37
|
m.geoffroy
|
/**
|
423 |
|
|
* Removes one element from the set of {@link #getRecommendedStatisticalMeasures() recommended statistical measures}
|
424 |
|
|
* assigned to <i>this</i> feature.
|
425 |
|
|
*
|
426 |
|
|
* @param recommendedStatisticalMeasure the statistical measure which should be removed
|
427 |
|
|
* @see #getRecommendedStatisticalMeasures()
|
428 |
|
|
* @see #addRecommendedStatisticalMeasure(StatisticalMeasure)
|
429 |
|
|
*/
|
430 |
9479da48
|
Andreas Müller
|
public void removeRecommendedStatisticalMeasure(
|
431 |
|
|
StatisticalMeasure recommendedStatisticalMeasure) {
|
432 |
|
|
this.recommendedStatisticalMeasures.remove(recommendedStatisticalMeasure);
|
433 |
|
|
}
|
434 |
|
|
|
435 |
52931327
|
h.fradin
|
/**
|
436 |
|
|
* Returns the set of {@link StatisticalMeasure statistical measures} recommended to be used
|
437 |
|
|
* in case of {@link QuantitativeData quantitative data} with <i>this</i> feature.
|
438 |
|
|
*/
|
439 |
|
|
public Set<MeasurementUnit> getRecommendedMeasurementUnits() {
|
440 |
|
|
return recommendedMeasurementUnits;
|
441 |
|
|
}
|
442 |
|
|
|
443 |
|
|
/**
|
444 |
|
|
* Adds a {@link StatisticalMeasure statistical measure} to the set of
|
445 |
|
|
* {@link #getRecommendedStatisticalMeasures() recommended statistical measures} assigned
|
446 |
|
|
* to <i>this</i> feature.
|
447 |
|
|
*
|
448 |
|
|
* @param recommendedStatisticalMeasure the statistical measure to be added
|
449 |
|
|
* @see #getRecommendedStatisticalMeasures()
|
450 |
|
|
*/
|
451 |
|
|
public void addRecommendedMeasurementUnit(
|
452 |
|
|
MeasurementUnit recommendedMeasurementUnit) {
|
453 |
|
|
this.recommendedMeasurementUnits.add(recommendedMeasurementUnit);
|
454 |
|
|
}
|
455 |
|
|
/**
|
456 |
|
|
* Removes one element from the set of {@link #getRecommendedStatisticalMeasures() recommended statistical measures}
|
457 |
|
|
* assigned to <i>this</i> feature.
|
458 |
|
|
*
|
459 |
|
|
* @param recommendedStatisticalMeasure the statistical measure which should be removed
|
460 |
|
|
* @see #getRecommendedStatisticalMeasures()
|
461 |
|
|
* @see #addRecommendedStatisticalMeasure(StatisticalMeasure)
|
462 |
|
|
*/
|
463 |
|
|
public void removeRecommendedMeasurementUnit(
|
464 |
|
|
MeasurementUnit recommendedMeasurementUnit) {
|
465 |
|
|
this.recommendedMeasurementUnits.remove(recommendedMeasurementUnit);
|
466 |
|
|
}
|
467 |
|
|
|
468 |
4daf2f37
|
m.geoffroy
|
/**
|
469 |
|
|
* Returns the set of {@link TermVocabulary term vocabularies} containing the list of
|
470 |
|
|
* possible {@link State states} to be used in {@link CategoricalData categorical data}
|
471 |
|
|
* with <i>this</i> feature.
|
472 |
f6765014
|
ben.clark
|
*
|
473 |
4daf2f37
|
m.geoffroy
|
*/
|
474 |
f6765014
|
ben.clark
|
public Set<TermVocabulary<State>> getSupportedCategoricalEnumerations() {
|
475 |
9479da48
|
Andreas Müller
|
return supportedCategoricalEnumerations;
|
476 |
|
|
}
|
477 |
|
|
|
478 |
4daf2f37
|
m.geoffroy
|
/**
|
479 |
|
|
* Adds a {@link TermVocabulary term vocabulary} to the set of
|
480 |
|
|
* {@link #getSupportedCategoricalEnumerations() supported state vocabularies} assigned
|
481 |
|
|
* to <i>this</i> feature.
|
482 |
|
|
*
|
483 |
|
|
* @param supportedCategoricalEnumeration the term vocabulary which should be removed
|
484 |
|
|
* @see #getSupportedCategoricalEnumerations()
|
485 |
|
|
*/
|
486 |
9479da48
|
Andreas Müller
|
public void addSupportedCategoricalEnumeration(
|
487 |
f6765014
|
ben.clark
|
TermVocabulary<State> supportedCategoricalEnumeration) {
|
488 |
9479da48
|
Andreas Müller
|
this.supportedCategoricalEnumerations.add(supportedCategoricalEnumeration);
|
489 |
|
|
}
|
490 |
4daf2f37
|
m.geoffroy
|
/**
|
491 |
|
|
* Removes one element from the set of {@link #getSupportedCategoricalEnumerations() supported state vocabularies}
|
492 |
|
|
* assigned to <i>this</i> feature.
|
493 |
|
|
*
|
494 |
|
|
* @param supportedCategoricalEnumeration the term vocabulary which should be removed
|
495 |
|
|
* @see #getSupportedCategoricalEnumerations()
|
496 |
|
|
* @see #addSupportedCategoricalEnumeration(TermVocabulary)
|
497 |
|
|
*/
|
498 |
9479da48
|
Andreas Müller
|
public void removeSupportedCategoricalEnumeration(
|
499 |
f6765014
|
ben.clark
|
TermVocabulary<State> supportedCategoricalEnumeration) {
|
500 |
9479da48
|
Andreas Müller
|
this.supportedCategoricalEnumerations.remove(supportedCategoricalEnumeration);
|
501 |
|
|
}
|
502 |
de3e2329
|
Andreas Müller
|
|
503 |
c9866164
|
ben.clark
|
@XmlElement(name = "KindOf", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
504 |
|
|
@XmlIDREF
|
505 |
|
|
@XmlSchemaType(name = "IDREF")
|
506 |
|
|
public Feature getKindOf(){
|
507 |
|
|
return super.getKindOf();
|
508 |
|
|
}
|
509 |
|
|
|
510 |
|
|
public void setKindOf(Feature kindOf){
|
511 |
|
|
super.setKindOf(kindOf);
|
512 |
|
|
}
|
513 |
|
|
|
514 |
|
|
@XmlElement(name = "PartOf", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
515 |
|
|
@XmlIDREF
|
516 |
|
|
@XmlSchemaType(name = "IDREF")
|
517 |
|
|
public Feature getPartOf(){
|
518 |
|
|
return super.getPartOf();
|
519 |
|
|
}
|
520 |
|
|
|
521 |
|
|
public void setPartOf(Feature partOf){
|
522 |
|
|
super.setPartOf(partOf);
|
523 |
|
|
}
|
524 |
|
|
|
525 |
|
|
@XmlElementWrapper(name = "Generalizations", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
526 |
|
|
@XmlElement(name = "GeneralizationOf", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
527 |
|
|
@XmlIDREF
|
528 |
|
|
@XmlSchemaType(name = "IDREF")
|
529 |
|
|
public Set<Feature> getGeneralizationOf(){
|
530 |
|
|
return super.getGeneralizationOf();
|
531 |
|
|
}
|
532 |
|
|
|
533 |
|
|
protected void setGeneralizationOf(Set<Feature> value){
|
534 |
|
|
super.setGeneralizationOf(value);
|
535 |
|
|
}
|
536 |
|
|
|
537 |
|
|
@XmlElementWrapper(name = "Includes", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
538 |
|
|
@XmlElement(name = "Include", namespace = "http://etaxonomy.eu/cdm/model/common/1.0")
|
539 |
|
|
@XmlIDREF
|
540 |
|
|
@XmlSchemaType(name = "IDREF")
|
541 |
|
|
public Set<Feature> getIncludes(){
|
542 |
|
|
return super.getIncludes();
|
543 |
|
|
}
|
544 |
|
|
|
545 |
|
|
protected void setIncludes(Set<Feature> includes) {
|
546 |
|
|
super.setIncludes(includes);
|
547 |
|
|
}
|
548 |
|
|
|
549 |
a8113d09
|
Andreas Müller
|
private static final UUID uuidUnknown = UUID.fromString("910307f1-dc3c-452c-a6dd-af5ac7cd365c");
|
550 |
de3e2329
|
Andreas Müller
|
private static final UUID uuidDescription = UUID.fromString("9087cdcd-8b08-4082-a1de-34c9ba9fb493");
|
551 |
|
|
private static final UUID uuidDistribution = UUID.fromString("9fc9d10c-ba50-49ee-b174-ce83fc3f80c6");
|
552 |
|
|
private static final UUID uuidEcology = UUID.fromString("aa923827-d333-4cf5-9a5f-438ae0a4746b");
|
553 |
|
|
private static final UUID uuidBiologyEcology = UUID.fromString("9832e24f-b670-43b4-ac7c-20a7261a1d8c");
|
554 |
|
|
private static final UUID uuidKey = UUID.fromString("a677f827-22b9-4205-bb37-11cb48dd9106");
|
555 |
|
|
private static final UUID uuidMaterialsExamined = UUID.fromString("7c0c7571-a864-47c1-891d-01f59000dae1");
|
556 |
|
|
private static final UUID uuidMaterialsMethods = UUID.fromString("1e87d9c3-0844-4a03-9686-773e2ccb3ab6");
|
557 |
|
|
private static final UUID uuidEtymology = UUID.fromString("dd653d48-355c-4aec-a4e7-724f6eb29f8d");
|
558 |
|
|
private static final UUID uuidDiagnosis = UUID.fromString("d43d8501-ceab-4caa-9e51-e87138528fac");
|
559 |
76f719a7
|
Andreas Müller
|
private static final UUID uuidProtolog = UUID.fromString("7f1fd111-fc52-49f0-9e75-d0097f576b2d");
|
560 |
dfa65fb3
|
Andreas Müller
|
private static final UUID uuidCommonName = UUID.fromString("fc810911-51f0-4a46-ab97-6562fe263ae5");
|
561 |
6b8f5129
|
Andreas Müller
|
private static final UUID uuidPhenology = UUID.fromString("a7786d3e-7c58-4141-8416-346d4c80c4a2");
|
562 |
|
|
private static final UUID uuidOccurrence = UUID.fromString("5deff505-1a32-4817-9a74-50e6936fd630");
|
563 |
|
|
private static final UUID uuidCitation = UUID.fromString("99b2842f-9aa7-42fa-bd5f-7285311e0101");
|
564 |
22b75e84
|
Andreas Müller
|
private static final UUID uuidAdditionalPublication = UUID.fromString("cb2eab09-6d9d-4e43-8ad2-873f23400930");
|
565 |
dc115dfc
|
Andreas Müller
|
private static final UUID uuidUses = UUID.fromString("e5374d39-b210-47c7-bec1-bee05b5f1cb6");
|
566 |
|
|
private static final UUID uuidConservation = UUID.fromString("4518fc20-2492-47de-b345-777d2b83c9cf");
|
567 |
|
|
private static final UUID uuidCultivation = UUID.fromString("e28965b2-a367-48c5-b954-8afc8ac2c69b");
|
568 |
|
|
private static final UUID uuidIntroduction = UUID.fromString("e75255ca-8ff4-4905-baad-f842927fe1d3");
|
569 |
|
|
private static final UUID uuidDiscussion = UUID.fromString("d3c4cbb6-0025-4322-886b-cd0156753a25");
|
570 |
6986dfa3
|
Andreas Müller
|
private static final UUID uuidImage = UUID.fromString("84193b2c-327f-4cce-90ef-c8da18fd5bb5");
|
571 |
|
|
|
572 |
|
|
|
573 |
de3e2329
|
Andreas Müller
|
// private static final UUID uuidDistribution = UUID.fromString("");
|
574 |
|
|
// private static final UUID uuidDistribution = UUID.fromString("");
|
575 |
|
|
// private static final UUID uuidDistribution = UUID.fromString("");
|
576 |
|
|
|
577 |
|
|
// "86bd920d-f8c5-48b9-af1d-03f63c31de5c",,"Abstract","Abstract"
|
578 |
|
|
// "489bf358-b78a-45e2-a691-f9f3f10446ce",,"Synopsis","Synopsis"
|
579 |
|
|
// "89d3b005-9876-4923-89d9-60eb75b9583b",,"Multiple","Multiple"
|
580 |
|
|
// "555a46bc-211a-476f-a022-c472970d6f8b",,"Acknowledgments","Acknowledgments"
|
581 |
|
|
|
582 |
|
|
|
583 |
4daf2f37
|
m.geoffroy
|
/**
|
584 |
|
|
* Creates and returns a new feature instance on the basis of a given string
|
585 |
|
|
* list (containing an UUID, an URI, a label and a description) and a given
|
586 |
|
|
* {@link Language language} to be associated with the description. Furthermore
|
587 |
|
|
* the flags concerning the supported subclasses of {@link DescriptionElementBase description elements}
|
588 |
|
|
* are set according to a particular string belonging to the given
|
589 |
|
|
* string list.<BR>
|
590 |
|
|
* This method overrides the readCsvLine method from {@link DefinedTermBase#readCsvLine(List, Language) DefinedTermBase}.
|
591 |
|
|
*
|
592 |
|
|
* @param csvLine the string list with elementary information for attributes
|
593 |
|
|
* @param lang the language in which the description has been formulated
|
594 |
|
|
* @see #NewInstance(String, String, String)
|
595 |
|
|
*/
|
596 |
1016f650
|
Andreas Müller
|
@Override
|
597 |
f6765014
|
ben.clark
|
public Feature readCsvLine(Class<Feature> termClass, List<String> csvLine, Map<UUID,DefinedTermBase> terms) {
|
598 |
|
|
Feature newInstance = super.readCsvLine(termClass, csvLine, terms);
|
599 |
1016f650
|
Andreas Müller
|
String text = (String)csvLine.get(4);
|
600 |
|
|
if (text != null && text.length() >= 6){
|
601 |
f6765014
|
ben.clark
|
if ("1".equals(text.substring(0, 1))){newInstance.setSupportsTextData(true);};
|
602 |
|
|
if ("1".equals(text.substring(1, 2))){newInstance.setSupportsQuantitativeData(true);};
|
603 |
|
|
if ("1".equals(text.substring(2, 3))){newInstance.setSupportsDistribution(true);};
|
604 |
|
|
if ("1".equals(text.substring(3, 4))){newInstance.setSupportsIndividualAssociation(true);};
|
605 |
|
|
if ("1".equals(text.substring(4, 5))){newInstance.setSupportsTaxonInteraction(true);};
|
606 |
|
|
if ("1".equals(text.substring(5, 6))){newInstance.setSupportsCommonTaxonName(true);};
|
607 |
b2231758
|
h.fradin
|
// if ("1".equals(text.substring(6, 7))){newInstance.setSupportsCategoricalData(true);};
|
608 |
1016f650
|
Andreas Müller
|
}
|
609 |
f6765014
|
ben.clark
|
return newInstance;
|
610 |
de3e2329
|
Andreas Müller
|
}
|
611 |
|
|
|
612 |
4daf2f37
|
m.geoffroy
|
/**
|
613 |
|
|
* Returns the "unknown" feature. This feature allows to store values of
|
614 |
|
|
* {@link DescriptionElementBase description elements} even if it is momentarily
|
615 |
|
|
* not known what they mean.
|
616 |
|
|
*/
|
617 |
a8113d09
|
Andreas Müller
|
public static final Feature UNKNOWN(){
|
618 |
f6765014
|
ben.clark
|
return UNKNOWN;
|
619 |
a8113d09
|
Andreas Müller
|
}
|
620 |
|
|
|
621 |
4daf2f37
|
m.geoffroy
|
/**
|
622 |
|
|
* Returns the "description" feature. This feature allows to handle global
|
623 |
|
|
* {@link DescriptionElementBase description elements} for a global {@link DescriptionBase description}.<BR>
|
624 |
|
|
* The "description" feature is the highest level feature.
|
625 |
|
|
*/
|
626 |
de3e2329
|
Andreas Müller
|
public static final Feature DESCRIPTION(){
|
627 |
f6765014
|
ben.clark
|
return DESCRIPTION;
|
628 |
de3e2329
|
Andreas Müller
|
}
|
629 |
|
|
|
630 |
4daf2f37
|
m.geoffroy
|
/**
|
631 |
|
|
* Returns the "distribution" feature. This feature allows to handle only
|
632 |
|
|
* {@link Distribution distributions}.
|
633 |
|
|
*
|
634 |
|
|
* @see #isSupportsDistribution()
|
635 |
|
|
*/
|
636 |
ea2896ba
|
m.geoffroy
|
public static final Feature DISTRIBUTION(){
|
637 |
f6765014
|
ben.clark
|
return DISTRIBUTION;
|
638 |
9479da48
|
Andreas Müller
|
}
|
639 |
|
|
|
640 |
4daf2f37
|
m.geoffroy
|
/**
|
641 |
|
|
* Returns the "discussion" feature. This feature can only be described
|
642 |
|
|
* with {@link TextData text data}.
|
643 |
|
|
*
|
644 |
|
|
* @see #isSupportsTextData()
|
645 |
|
|
*/
|
646 |
dc115dfc
|
Andreas Müller
|
public static final Feature DISCUSSION(){
|
647 |
f6765014
|
ben.clark
|
return DISCUSSION;
|
648 |
dc115dfc
|
Andreas Müller
|
}
|
649 |
|
|
|
650 |
4daf2f37
|
m.geoffroy
|
/**
|
651 |
|
|
* Returns the "ecology" feature. This feature only applies
|
652 |
|
|
* to {@link SpecimenDescription specimen descriptions} or to {@link TaxonDescription taxon descriptions}.<BR>
|
653 |
|
|
* The "ecology" feature generalizes all other possible features concerning
|
654 |
|
|
* ecological matters.
|
655 |
|
|
*/
|
656 |
de3e2329
|
Andreas Müller
|
public static final Feature ECOLOGY(){
|
657 |
f6765014
|
ben.clark
|
return ECOLOGY;
|
658 |
de3e2329
|
Andreas Müller
|
}
|
659 |
|
|
|
660 |
4daf2f37
|
m.geoffroy
|
/**
|
661 |
|
|
* Returns the "biology_ecology" feature. This feature only applies
|
662 |
|
|
* to {@link SpecimenDescription specimen descriptions} or to {@link TaxonDescription taxon descriptions}.<BR>
|
663 |
|
|
* The "biology_ecology" feature generalizes all possible features concerning
|
664 |
|
|
* biological aspects of ecological matters.
|
665 |
|
|
*
|
666 |
|
|
* @see #ECOLOGY()
|
667 |
|
|
*/
|
668 |
de3e2329
|
Andreas Müller
|
public static final Feature BIOLOGY_ECOLOGY(){
|
669 |
f6765014
|
ben.clark
|
return BIOLOGY_ECOLOGY;
|
670 |
de3e2329
|
Andreas Müller
|
}
|
671 |
|
|
|
672 |
4daf2f37
|
m.geoffroy
|
/**
|
673 |
|
|
* Returns the "key" feature. This feature is the "upper" feature generalizing
|
674 |
|
|
* all features being used within an identification key.
|
675 |
|
|
*/
|
676 |
de3e2329
|
Andreas Müller
|
public static final Feature KEY(){
|
677 |
f6765014
|
ben.clark
|
return KEY;
|
678 |
de3e2329
|
Andreas Müller
|
}
|
679 |
|
|
|
680 |
|
|
|
681 |
4daf2f37
|
m.geoffroy
|
/**
|
682 |
|
|
* Returns the "materials_examined" feature. This feature can only be described
|
683 |
|
|
* with {@link TextData text data} or eventually with {@link CategoricalData categorical data}
|
684 |
|
|
* mentioning which material has been examined in order to accomplish
|
685 |
|
|
* the description. This feature applies only to
|
686 |
|
|
* {@link SpecimenDescription specimen descriptions} or to {@link TaxonDescription taxon descriptions}.
|
687 |
|
|
*/
|
688 |
de3e2329
|
Andreas Müller
|
public static final Feature MATERIALS_EXAMINED(){
|
689 |
f6765014
|
ben.clark
|
return MATERIALS_EXAMINED;
|
690 |
de3e2329
|
Andreas Müller
|
}
|
691 |
|
|
|
692 |
4daf2f37
|
m.geoffroy
|
/**
|
693 |
|
|
* Returns the "materials_methods" feature. This feature can only be described
|
694 |
|
|
* with {@link TextData text data} or eventually with {@link CategoricalData categorical data}
|
695 |
|
|
* mentioning which methods have been adopted to analyze the material in
|
696 |
|
|
* order to accomplish the description. This feature applies only to
|
697 |
|
|
* {@link SpecimenDescription specimen descriptions} or to {@link TaxonDescription taxon descriptions}.
|
698 |
|
|
*/
|
699 |
de3e2329
|
Andreas Müller
|
public static final Feature MATERIALS_METHODS(){
|
700 |
f6765014
|
ben.clark
|
return MATERIALS_METHODS;
|
701 |
de3e2329
|
Andreas Müller
|
}
|
702 |
|
|
|
703 |
4daf2f37
|
m.geoffroy
|
/**
|
704 |
|
|
* Returns the "etymology" feature. This feature can only be described
|
705 |
|
|
* with {@link TextData text data} or eventually with {@link CategoricalData categorical data}
|
706 |
|
|
* giving some information about the history of the taxon name. This feature applies only to
|
707 |
|
|
* {@link TaxonNameDescription taxon name descriptions}.
|
708 |
|
|
*/
|
709 |
de3e2329
|
Andreas Müller
|
public static final Feature ETYMOLOGY(){
|
710 |
f6765014
|
ben.clark
|
return ETYMOLOGY;
|
711 |
de3e2329
|
Andreas Müller
|
}
|
712 |
|
|
|
713 |
4daf2f37
|
m.geoffroy
|
/**
|
714 |
|
|
* Returns the "diagnosis" feature. This feature can only be described
|
715 |
|
|
* with {@link TextData text data} or eventually with {@link CategoricalData categorical data}.
|
716 |
|
|
* This feature applies only to {@link SpecimenDescription specimen descriptions} or to
|
717 |
|
|
* {@link TaxonDescription taxon descriptions}.
|
718 |
|
|
*/
|
719 |
de3e2329
|
Andreas Müller
|
public static final Feature DIAGNOSIS(){
|
720 |
f6765014
|
ben.clark
|
return DIAGNOSIS;
|
721 |
de3e2329
|
Andreas Müller
|
}
|
722 |
dc115dfc
|
Andreas Müller
|
|
723 |
76f719a7
|
Andreas Müller
|
|
724 |
4daf2f37
|
m.geoffroy
|
/**
|
725 |
|
|
* Returns the "introduction" feature. This feature can only be described
|
726 |
|
|
* with {@link TextData text data}.
|
727 |
|
|
*
|
728 |
|
|
* @see #isSupportsTextData()
|
729 |
|
|
*/
|
730 |
dc115dfc
|
Andreas Müller
|
public static final Feature INTRODUCTION(){
|
731 |
f6765014
|
ben.clark
|
return INTRODUCTION;
|
732 |
dc115dfc
|
Andreas Müller
|
}
|
733 |
|
|
|
734 |
4daf2f37
|
m.geoffroy
|
/**
|
735 |
|
|
* Returns the "protologue" feature. This feature can only be described
|
736 |
|
|
* with {@link TextData text data} reproducing the content of the protologue
|
737 |
|
|
* (or some information about it) of the taxon name. This feature applies only to
|
738 |
|
|
* {@link TaxonNameDescription taxon name descriptions}.
|
739 |
|
|
*
|
740 |
|
|
* @see #isSupportsTextData()
|
741 |
|
|
*/
|
742 |
76f719a7
|
Andreas Müller
|
public static final Feature PROTOLOG(){
|
743 |
f6765014
|
ben.clark
|
return PROTOLOG;
|
744 |
76f719a7
|
Andreas Müller
|
}
|
745 |
4daf2f37
|
m.geoffroy
|
/**
|
746 |
|
|
* Returns the "common_name" feature. This feature allows to handle only
|
747 |
|
|
* {@link CommonTaxonName common names}.
|
748 |
|
|
*
|
749 |
|
|
* @see #isSupportsCommonTaxonName()
|
750 |
|
|
*/
|
751 |
dfa65fb3
|
Andreas Müller
|
public static final Feature COMMON_NAME(){
|
752 |
f6765014
|
ben.clark
|
return COMMON_NAME;
|
753 |
dfa65fb3
|
Andreas Müller
|
}
|
754 |
6b8f5129
|
Andreas Müller
|
|
755 |
4daf2f37
|
m.geoffroy
|
/**
|
756 |
|
|
* Returns the "phenology" feature. This feature can only be described
|
757 |
|
|
* with {@link CategoricalData categorical data} or eventually with {@link TextData text data}
|
758 |
|
|
* containing information time about recurring natural phenomena.
|
759 |
|
|
* This feature only applies to {@link TaxonDescription taxon descriptions}.<BR>
|
760 |
|
|
* The "phenology" feature generalizes all other possible features
|
761 |
|
|
* concerning time information about particular natural phenomena
|
762 |
|
|
* (such as "first flight of butterflies").
|
763 |
|
|
*/
|
764 |
6b8f5129
|
Andreas Müller
|
public static final Feature PHENOLOGY(){
|
765 |
f6765014
|
ben.clark
|
return PHENOLOGY;
|
766 |
6b8f5129
|
Andreas Müller
|
}
|
767 |
de3e2329
|
Andreas Müller
|
|
768 |
4daf2f37
|
m.geoffroy
|
/**
|
769 |
|
|
* Returns the "occurrence" feature.
|
770 |
|
|
*/
|
771 |
6b8f5129
|
Andreas Müller
|
public static final Feature OCCURRENCE(){
|
772 |
f6765014
|
ben.clark
|
return OCCURRENCE;
|
773 |
6b8f5129
|
Andreas Müller
|
}
|
774 |
|
|
|
775 |
4daf2f37
|
m.geoffroy
|
/**
|
776 |
|
|
* Returns the "citation" feature. This feature can only be described
|
777 |
|
|
* with {@link TextData text data}.
|
778 |
|
|
*
|
779 |
|
|
* @see #isSupportsTextData()
|
780 |
|
|
*/
|
781 |
6b8f5129
|
Andreas Müller
|
public static final Feature CITATION(){
|
782 |
f6765014
|
ben.clark
|
return CITATION;
|
783 |
6b8f5129
|
Andreas Müller
|
}
|
784 |
|
|
|
785 |
4daf2f37
|
m.geoffroy
|
/**
|
786 |
|
|
* Returns the "additional_publication" feature. This feature can only be
|
787 |
|
|
* described with {@link TextData text data} with information about a
|
788 |
|
|
* publication where a {@link TaxonNameBase taxon name} has also been published
|
789 |
|
|
* but which is not the {@link TaxonNameBase#getNomenclaturalReference() nomenclatural reference}.
|
790 |
|
|
* This feature applies only to {@link TaxonNameDescription taxon name descriptions}.
|
791 |
|
|
*
|
792 |
|
|
* @see #isSupportsTextData()
|
793 |
|
|
*/
|
794 |
22b75e84
|
Andreas Müller
|
public static final Feature ADDITIONAL_PUBLICATION(){
|
795 |
f6765014
|
ben.clark
|
return ADDITIONAL_PUBLICATION;
|
796 |
22b75e84
|
Andreas Müller
|
}
|
797 |
|
|
|
798 |
dc115dfc
|
Andreas Müller
|
|
799 |
4daf2f37
|
m.geoffroy
|
/**
|
800 |
|
|
* Returns the "uses" feature. This feature only applies
|
801 |
|
|
* to {@link TaxonDescription taxon descriptions}.<BR>
|
802 |
|
|
* The "uses" feature generalizes all other possible features concerning
|
803 |
|
|
* particular uses (for instance "industrial use of seeds").
|
804 |
|
|
*/
|
805 |
dc115dfc
|
Andreas Müller
|
public static final Feature USES(){
|
806 |
f6765014
|
ben.clark
|
return USES;
|
807 |
dc115dfc
|
Andreas Müller
|
}
|
808 |
|
|
|
809 |
|
|
|
810 |
4daf2f37
|
m.geoffroy
|
/**
|
811 |
|
|
* Returns the "conservation" feature. This feature only applies
|
812 |
|
|
* to {@link SpecimenDescription specimen descriptions} and generalizes
|
813 |
|
|
* methods and conditions for the conservation of {@link Specimen specimens}.<BR>
|
814 |
|
|
*/
|
815 |
dc115dfc
|
Andreas Müller
|
public static final Feature CONSERVATION(){
|
816 |
f6765014
|
ben.clark
|
return CONSERVATION;
|
817 |
dc115dfc
|
Andreas Müller
|
}
|
818 |
|
|
|
819 |
|
|
|
820 |
4daf2f37
|
m.geoffroy
|
/**
|
821 |
|
|
* Returns the "cultivation" feature.
|
822 |
|
|
*/
|
823 |
dc115dfc
|
Andreas Müller
|
public static final Feature CULTIVATION(){
|
824 |
f6765014
|
ben.clark
|
return CULTIVATION;
|
825 |
dc115dfc
|
Andreas Müller
|
}
|
826 |
|
|
|
827 |
|
|
|
828 |
6986dfa3
|
Andreas Müller
|
/**
|
829 |
|
|
* Returns the "cultivation" feature.
|
830 |
|
|
*/
|
831 |
|
|
public static final Feature IMAGE(){
|
832 |
f6765014
|
ben.clark
|
return IMAGE;
|
833 |
6986dfa3
|
Andreas Müller
|
}
|
834 |
|
|
|
835 |
4daf2f37
|
m.geoffroy
|
/**
|
836 |
|
|
* Returns the "hybrid_parent" feature. This feature can only be used
|
837 |
|
|
* by {@link TaxonInteraction taxon interactions}.<BR>
|
838 |
|
|
* <P>
|
839 |
|
|
* Note: It must be distinguished between hybrid relationships as
|
840 |
|
|
* relevant nomenclatural relationships between {@link BotanicalName plant names}
|
841 |
|
|
* on the one side and the biological relation between two {@link Taxon taxa}
|
842 |
|
|
* as it is here the case on the other one.
|
843 |
|
|
*
|
844 |
|
|
* @see #isSupportsTaxonInteraction()
|
845 |
|
|
* @see HybridRelationshipType
|
846 |
|
|
*/
|
847 |
ea2896ba
|
m.geoffroy
|
public static final Feature HYBRID_PARENT(){
|
848 |
46170dab
|
Andreas Müller
|
//TODO
|
849 |
|
|
logger.warn("HYBRID_PARENT not yet implemented");
|
850 |
9479da48
|
Andreas Müller
|
return null;
|
851 |
|
|
}
|
852 |
|
|
|
853 |
f6765014
|
ben.clark
|
@Override
|
854 |
|
|
protected void setDefaultTerms(TermVocabulary<Feature> termVocabulary) {
|
855 |
|
|
Feature.ADDITIONAL_PUBLICATION = termVocabulary.findTermByUuid(Feature.uuidAdditionalPublication);
|
856 |
|
|
Feature.BIOLOGY_ECOLOGY = termVocabulary.findTermByUuid(Feature.uuidBiologyEcology);
|
857 |
|
|
Feature.CITATION = termVocabulary.findTermByUuid(Feature.uuidCitation);
|
858 |
|
|
Feature.COMMON_NAME = termVocabulary.findTermByUuid(Feature.uuidCommonName);
|
859 |
|
|
Feature.CONSERVATION = termVocabulary.findTermByUuid(Feature.uuidConservation);
|
860 |
|
|
Feature.CULTIVATION = termVocabulary.findTermByUuid(Feature.uuidCultivation);
|
861 |
|
|
Feature.DESCRIPTION = termVocabulary.findTermByUuid(Feature.uuidDescription);
|
862 |
|
|
Feature.DIAGNOSIS = termVocabulary.findTermByUuid(Feature.uuidDiagnosis);
|
863 |
|
|
Feature.DISCUSSION = termVocabulary.findTermByUuid(Feature.uuidDiscussion);
|
864 |
|
|
Feature.DISTRIBUTION = termVocabulary.findTermByUuid(Feature.uuidDistribution);
|
865 |
|
|
Feature.ECOLOGY = termVocabulary.findTermByUuid(Feature.uuidEcology);
|
866 |
|
|
Feature.ETYMOLOGY = termVocabulary.findTermByUuid(Feature.uuidEtymology);
|
867 |
|
|
Feature.IMAGE = termVocabulary.findTermByUuid(Feature.uuidImage);
|
868 |
|
|
Feature.INTRODUCTION = termVocabulary.findTermByUuid(Feature.uuidIntroduction);
|
869 |
|
|
Feature.KEY = termVocabulary.findTermByUuid(Feature.uuidKey);
|
870 |
|
|
Feature.MATERIALS_EXAMINED = termVocabulary.findTermByUuid(Feature.uuidMaterialsExamined);
|
871 |
|
|
Feature.MATERIALS_METHODS = termVocabulary.findTermByUuid(Feature.uuidMaterialsMethods);
|
872 |
|
|
Feature.OCCURRENCE = termVocabulary.findTermByUuid(Feature.uuidOccurrence);
|
873 |
|
|
Feature.PHENOLOGY = termVocabulary.findTermByUuid(Feature.uuidPhenology);
|
874 |
|
|
Feature.PROTOLOG = termVocabulary.findTermByUuid(Feature.uuidProtolog);
|
875 |
|
|
Feature.UNKNOWN = termVocabulary.findTermByUuid(Feature.uuidUnknown);
|
876 |
|
|
Feature.USES = termVocabulary.findTermByUuid(Feature.uuidUses);
|
877 |
|
|
}
|
878 |
|
|
|
879 |
9479da48
|
Andreas Müller
|
|
880 |
|
|
}
|