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Katja Luther
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/**
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* Copyright (C) 2020 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.persistence.dto;
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Katja Luther
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import java.net.URI;
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import java.util.ArrayList;
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import java.util.EnumSet;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import eu.etaxonomy.cdm.model.common.CdmClass;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.media.Media;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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import eu.etaxonomy.cdm.model.term.Representation;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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/**
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* @author k.luther
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* @since Jun 11, 2020
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*/
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public class FeatureDto extends TermDto {
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private static final long serialVersionUID = 5123011385890020838L;
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boolean isAvailableForTaxon = true;
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boolean isAvailableForTaxonName = true;
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boolean isAvailableForOccurrence = true;
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boolean isSupportsCategoricalData = false;
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boolean isSupportsQuantitativeData = false;
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Set<TermDto> recommendedMeasurementUnits = new HashSet<>();
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Set<TermDto> recommendedStatisticalMeasures = new HashSet<>();
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Set<TermVocabularyDto> supportedCategoricalEnumerations = new HashSet<>();
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Set<TermVocabularyDto> recommendedModifierEnumeration = new HashSet<>();
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public FeatureDto(UUID uuid, Set<Representation> representations, UUID partOfUuid, UUID kindOfUuid,
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UUID vocabularyUuid, Integer orderIndex, String idInVocabulary, Set<Representation> vocRepresentations, boolean isAvailableForTaxon,
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boolean isAvailableForTaxonName, boolean isAvailableForOccurrence, String titleCache, boolean isSupportsCategoricalData, boolean isSupportsQuantitativeData,
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Set<TermVocabularyDto> supportedCategoricalEnumerations, Set<TermVocabularyDto> recommendedModifierEnumeration, Set<TermDto> recommendedMeasurementUnits, Set<TermDto> recommendedStatisticalMeasures){
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super(uuid, representations, TermType.Feature, partOfUuid, kindOfUuid,
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vocabularyUuid, orderIndex, idInVocabulary, vocRepresentations, titleCache);
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this.isAvailableForOccurrence = isAvailableForOccurrence;
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this.isAvailableForTaxon = isAvailableForTaxon;
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this.isAvailableForTaxonName = isAvailableForTaxonName;
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this.isSupportsCategoricalData = isSupportsCategoricalData;
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this.isSupportsQuantitativeData = isSupportsQuantitativeData;
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this.recommendedMeasurementUnits = recommendedMeasurementUnits;
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this.recommendedStatisticalMeasures = recommendedStatisticalMeasures;
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this.supportedCategoricalEnumerations = supportedCategoricalEnumerations;
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this.recommendedModifierEnumeration = recommendedModifierEnumeration;
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}
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static public FeatureDto fromTerm(Feature term) {
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FeatureDto result = (FeatureDto) fromTerm(term, null, false);
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result.isAvailableForOccurrence = term.isAvailableForOccurrence();
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result.isAvailableForTaxon = term.isAvailableForTaxon();
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result.isAvailableForTaxonName = term.isAvailableForTaxonName();
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result.isSupportsCategoricalData = term.isSupportsCategoricalData();
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result.isSupportsQuantitativeData = term.isSupportsQuantitativeData();
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if (term.getRecommendedMeasurementUnits() != null && !term.getRecommendedMeasurementUnits().isEmpty()){
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result.recommendedMeasurementUnits = new HashSet<>();
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}
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for (MeasurementUnit unit: term.getRecommendedMeasurementUnits()){
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result.recommendedMeasurementUnits.add(TermDto.fromTerm(unit));
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}
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if (term.getRecommendedStatisticalMeasures() != null && !term.getRecommendedStatisticalMeasures().isEmpty()){
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result.recommendedStatisticalMeasures = new HashSet<>();
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}
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for (StatisticalMeasure unit: term.getRecommendedStatisticalMeasures()){
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result.recommendedStatisticalMeasures.add(TermDto.fromTerm(unit));
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}
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if (term.getSupportedCategoricalEnumerations() != null && !term.getSupportedCategoricalEnumerations().isEmpty()){
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result.supportedCategoricalEnumerations = new HashSet<>();
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}
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for (TermVocabulary<State> voc: term.getSupportedCategoricalEnumerations()){
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result.supportedCategoricalEnumerations.add(new TermVocabularyDto(voc.getUuid(), voc.getRepresentations(), voc.getTermType(), voc.getTitleCache(), voc.isAllowDuplicates(), voc.isOrderRelevant(), voc.isFlat()));
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}
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if (term.getRecommendedModifierEnumeration() != null && !term.getRecommendedModifierEnumeration().isEmpty()){
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result.recommendedModifierEnumeration = new HashSet<>();
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}
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for (TermVocabulary<DefinedTerm> voc: term.getRecommendedModifierEnumeration()){
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result.recommendedModifierEnumeration.add(new TermVocabularyDto(voc.getUuid(), voc.getRepresentations(), voc.getTermType(), voc.getTitleCache(), voc.isAllowDuplicates(), voc.isOrderRelevant(), voc.isFlat()));
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}
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return result;
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}
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/**
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* @return the isAvailableForTaxon
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*/
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public boolean isAvailableForTaxon() {
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return isAvailableForTaxon;
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}
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/**
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* @param isAvailableForTaxon the isAvailableForTaxon to set
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*/
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public void setAvailableForTaxon(boolean isAvailableForTaxon) {
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this.isAvailableForTaxon = isAvailableForTaxon;
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}
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/**
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* @return the isAvailableForTaxonName
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*/
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public boolean isAvailableForTaxonName() {
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return isAvailableForTaxonName;
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}
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/**
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* @param isAvailableForTaxonName the isAvailableForTaxonName to set
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*/
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public void setAvailableForTaxonName(boolean isAvailableForTaxonName) {
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this.isAvailableForTaxonName = isAvailableForTaxonName;
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}
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/**
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* @return the isAvailableForOccurrence
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*/
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public boolean isAvailableForOccurrence() {
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return isAvailableForOccurrence;
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}
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/**
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* @param isAvailableForOccurrence the isAvailableForOccurrence to set
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*/
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public void setAvailableForOccurrence(boolean isAvailableForOccurrence) {
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this.isAvailableForOccurrence = isAvailableForOccurrence;
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}
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/**
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* @return the isSupportsCategoricalData
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*/
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public boolean isSupportsCategoricalData() {
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return isSupportsCategoricalData;
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}
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/**
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* @param isSupportsCategoricalData the isSupportsCategoricalData to set
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*/
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public void setSupportsCategoricalData(boolean isSupportsCategoricalData) {
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this.isSupportsCategoricalData = isSupportsCategoricalData;
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}
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/**
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* @return the isSupportsQuantitativeData
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*/
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public boolean isSupportsQuantitativeData() {
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return isSupportsQuantitativeData;
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}
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/**
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* @param isSupportsQuantitativeData the isSupportsQuantitativeData to set
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*/
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public void setSupportsQuantitativeData(boolean isSupportsQuantitativeData) {
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this.isSupportsQuantitativeData = isSupportsQuantitativeData;
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}
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/**
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* @return the recommendedMeasurementUnits
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*/
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public Set<TermDto> getRecommendedMeasurementUnits() {
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return recommendedMeasurementUnits;
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}
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/**
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* @param recommendedMeasurementUnits the recommendedMeasurementUnits to set
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*/
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public void setRecommendedMeasurementUnits(Set<TermDto> recommendedMeasurementUnits) {
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this.recommendedMeasurementUnits = recommendedMeasurementUnits;
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}
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/**
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* @return the recommendedStatisticalMeasures
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*/
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public Set<TermDto> getRecommendedStatisticalMeasures() {
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return recommendedStatisticalMeasures;
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}
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/**
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* @param recommendedStatisticalMeasures the recommendedStatisticalMeasures to set
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*/
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public void setRecommendedStatisticalMeasures(Set<TermDto> recommendedStatisticalMeasures) {
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this.recommendedStatisticalMeasures = recommendedStatisticalMeasures;
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}
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/**
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* @return the supportedCategoricalEnumerations
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*/
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public Set<TermVocabularyDto> getSupportedCategoricalEnumerations() {
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return supportedCategoricalEnumerations;
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}
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/**
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* @param supportedCategoricalEnumerations the supportedCategoricalEnumerations to set
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*/
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public void setSupportedCategoricalEnumerations(Set<TermVocabularyDto> supportedCategoricalEnumerations) {
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this.supportedCategoricalEnumerations = supportedCategoricalEnumerations;
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}
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/**
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* @return the recommendedModifierEnumeration
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*/
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public Set<TermVocabularyDto> getRecommendedModifierEnumeration() {
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return recommendedModifierEnumeration;
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}
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/**
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* @param recommendedModifierEnumeration the recommendedModifierEnumeration to set
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*/
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public void setRecommendedModifierEnumeration(Set<TermVocabularyDto> recommendedModifierEnumeration) {
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this.recommendedModifierEnumeration = recommendedModifierEnumeration;
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}
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public static String getTermDtoSelect(){
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String[] result = createSqlParts("DefinedTermBase");
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return result[0]+result[1]+result[2];
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}
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private static String[] createSqlParts(String fromTable) {
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String sqlSelectString = ""
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+ "select a.uuid, "
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+ "r, "
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+ "p.uuid, "
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+ "k.uuid, "
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+ "v.uuid, "
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+ "a.orderIndex, "
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+ "a.idInVocabulary, "
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+ "voc_rep, "
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+ "a.termType, "
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+ "a.uri, "
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+ "m, "
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+ "a.availableFor, "
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+ "a.titleCache, "
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+ "a.supportedDataTypes, "
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+ "recommendedModifierEnumeration, "
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+ "recommendedStatisticalMeasures, "
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+ "supportedCategoricalEnumerations, "
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+ "recommendedMeasurementUnits ";
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String sqlFromString = " from "+fromTable+" as a ";
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String sqlJoinString = "LEFT JOIN a.partOf as p "
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+ "LEFT JOIN a.kindOf as k "
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+ "LEFT JOIN a.media as m "
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+ "LEFT JOIN a.representations AS r "
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+ "LEFT JOIN a.vocabulary as v "
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+ "LEFT JOIN v.representations as voc_rep "
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+ "LEFT JOIN a.recommendedModifierEnumeration as recommendedModifierEnumeration "
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+ "LEFT JOIN a.recommendedStatisticalMeasures as recommendedStatisticalMeasures "
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+ "LEFT JOIN a.supportedCategoricalEnumerations as supportedCategoricalEnumerations "
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+ "LEFT JOIN a.recommendedMeasurementUnits as recommendedMeasurementUnits "
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;
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String[] result = new String[3];
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result[0] = sqlSelectString;
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result[1] = sqlFromString;
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result[2] = sqlJoinString;
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return result;
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}
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public static List<TermDto> termDtoListFrom(List<Object[]> results) {
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List<TermDto> dtos = new ArrayList<>(); // list to ensure order
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// map to handle multiple representations/media/vocRepresentation because of LEFT JOIN
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Map<UUID, TermDto> dtoMap = new HashMap<>(results.size());
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for (Object[] elements : results) {
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UUID uuid = (UUID)elements[0];
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if(dtoMap.containsKey(uuid)){
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// multiple results for one term -> multiple (voc) representation/media
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if(elements[1]!=null){
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dtoMap.get(uuid).addRepresentation((Representation)elements[1]);
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}
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if(elements[7]!=null){
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dtoMap.get(uuid).addVocRepresentation((Representation)elements[7]);
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}
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if(elements[10]!=null){
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dtoMap.get(uuid).addMedia(((Media) elements[10]).getUuid());
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}
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} else {
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// term representation
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Set<Representation> representations = new HashSet<>();
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if(elements[1] instanceof Representation) {
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representations = new HashSet<Representation>(1);
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representations.add((Representation)elements[1]);
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}
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// term media
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Set<UUID> mediaUuids = new HashSet<>();
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if(elements[10] instanceof Media) {
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mediaUuids.add(((Media) elements[10]).getUuid());
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}
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// voc representation
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| 313 |
|
|
Set<Representation> vocRepresentations = new HashSet<>();
|
| 314 |
|
|
if(elements[7] instanceof Representation) {
|
| 315 |
|
|
vocRepresentations = new HashSet<Representation>(7);
|
| 316 |
|
|
vocRepresentations.add((Representation)elements[7]);
|
| 317 |
|
|
}
|
| 318 |
|
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boolean isAvailableForTaxon = false;
|
| 319 |
|
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boolean isAvailableForTaxonName = false;
|
| 320 |
|
|
boolean isAvailableForOccurrence = false;
|
| 321 |
|
|
|
| 322 |
|
|
EnumSet<CdmClass> availableForString = (EnumSet<CdmClass>)elements[11];
|
| 323 |
|
|
|
| 324 |
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if (availableForString.contains(CdmClass.TAXON)){
|
| 325 |
|
|
isAvailableForTaxon = true;
|
| 326 |
|
|
}
|
| 327 |
|
|
if (availableForString.contains(CdmClass.TAXON_NAME)){
|
| 328 |
|
|
isAvailableForTaxonName = true;
|
| 329 |
|
|
}
|
| 330 |
|
|
if (availableForString.contains(CdmClass.OCCURRENCE)){
|
| 331 |
|
|
isAvailableForOccurrence = true;
|
| 332 |
|
|
}
|
| 333 |
|
|
boolean isSupportsCategoricalData = false;
|
| 334 |
|
|
boolean isSupportsQuantitativeData = false;
|
| 335 |
|
|
|
| 336 |
|
|
EnumSet<CdmClass> supportsString = (EnumSet<CdmClass>)elements[13];
|
| 337 |
|
|
|
| 338 |
|
|
if (supportsString.contains(CdmClass.CATEGORICAL_DATA)){
|
| 339 |
|
|
isSupportsCategoricalData = true;
|
| 340 |
|
|
}
|
| 341 |
|
|
if (supportsString.contains(CdmClass.QUANTITATIVE_DATA)){
|
| 342 |
|
|
isSupportsQuantitativeData = true;
|
| 343 |
|
|
}
|
| 344 |
|
|
|
| 345 |
|
|
Object o = elements[14];
|
| 346 |
|
|
Set<TermVocabularyDto> recommendedModifierDtos = new HashSet<>();
|
| 347 |
|
|
if (o instanceof TermVocabulary){
|
| 348 |
|
|
recommendedModifierDtos.add(TermVocabularyDto.fromVocabulary((TermVocabulary)o));
|
| 349 |
|
|
}else if (o instanceof Set){
|
| 350 |
|
|
Set<TermVocabulary<DefinedTerm>> recommendedModifierEnumeration = (Set<TermVocabulary<DefinedTerm>>) o;
|
| 351 |
|
|
if (recommendedModifierEnumeration != null){
|
| 352 |
|
|
for (TermVocabulary<DefinedTerm> voc: recommendedModifierEnumeration){
|
| 353 |
|
|
recommendedModifierDtos.add(TermVocabularyDto.fromVocabulary(voc));
|
| 354 |
|
|
}
|
| 355 |
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}
|
| 356 |
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}
|
| 357 |
|
|
|
| 358 |
|
|
|
| 359 |
|
|
|
| 360 |
|
|
o = elements[15];
|
| 361 |
|
|
Set<TermDto> recommendedStatisticalMeasuresDtos = new HashSet<>();
|
| 362 |
|
|
if (o instanceof StatisticalMeasure){
|
| 363 |
|
|
recommendedStatisticalMeasuresDtos.add(TermDto.fromTerm((StatisticalMeasure)o));
|
| 364 |
|
|
}else if (o instanceof Set){
|
| 365 |
|
|
Set<StatisticalMeasure> recommendedStatisticalMeasures = (Set<StatisticalMeasure>) o;
|
| 366 |
|
|
if (recommendedStatisticalMeasures != null) {
|
| 367 |
|
|
for (StatisticalMeasure term: recommendedStatisticalMeasures){
|
| 368 |
|
|
recommendedStatisticalMeasuresDtos.add(TermDto.fromTerm(term));
|
| 369 |
|
|
}
|
| 370 |
|
|
}
|
| 371 |
|
|
}
|
| 372 |
|
|
o = elements[16];
|
| 373 |
|
|
Set<TermVocabularyDto> supportedCategoricalDtos = new HashSet<>();
|
| 374 |
|
|
if (o instanceof TermVocabulary){
|
| 375 |
|
|
supportedCategoricalDtos.add(TermVocabularyDto.fromVocabulary((TermVocabulary)o));
|
| 376 |
|
|
}else if (o instanceof Set){
|
| 377 |
|
|
Set<TermVocabulary> supportedCategoricalEnumerations = (Set<TermVocabulary>)o;
|
| 378 |
|
|
for (TermVocabulary<State> voc: supportedCategoricalEnumerations){
|
| 379 |
|
|
supportedCategoricalDtos.add(TermVocabularyDto.fromVocabulary(voc));
|
| 380 |
5edd1fbf
|
Katja Luther
|
}
|
| 381 |
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|
Katja Luther
|
}
|
| 382 |
|
|
|
| 383 |
|
|
// if (supportedCategoricalEnumerations != null){
|
| 384 |
|
|
// for (TermVocabulary<State> voc: supportedCategoricalEnumerations){
|
| 385 |
|
|
// supportedCategoricalDtos.add(TermVocabularyDto.fromVocabulary(voc));
|
| 386 |
|
|
// }
|
| 387 |
|
|
// }
|
| 388 |
|
|
o = elements[17];
|
| 389 |
|
|
Set<TermDto> recommendedMeasurementUnitsDtos = new HashSet<>();
|
| 390 |
|
|
if (o instanceof MeasurementUnit){
|
| 391 |
|
|
recommendedMeasurementUnitsDtos.add(TermDto.fromTerm((MeasurementUnit)o));
|
| 392 |
|
|
}else if (o instanceof Set){
|
| 393 |
|
|
Set<MeasurementUnit> recommendedMeasurementUnits = (Set<MeasurementUnit>) elements[17];
|
| 394 |
|
|
for (MeasurementUnit term: recommendedMeasurementUnits){
|
| 395 |
|
|
recommendedMeasurementUnitsDtos.add(TermDto.fromTerm(term));
|
| 396 |
5edd1fbf
|
Katja Luther
|
}
|
| 397 |
4d68581f
|
Katja Luther
|
}
|
| 398 |
|
|
|
| 399 |
|
|
// if (recommendedMeasurementUnits != null){
|
| 400 |
|
|
// for (MeasurementUnit term: recommendedMeasurementUnits){
|
| 401 |
|
|
// recommendedMeasurementUnitsDtos.add(TermDto.fromTerm(term));
|
| 402 |
|
|
// }
|
| 403 |
|
|
// }
|
| 404 |
5edd1fbf
|
Katja Luther
|
|
| 405 |
|
|
TermDto termDto = new FeatureDto(
|
| 406 |
|
|
uuid,
|
| 407 |
|
|
representations,
|
| 408 |
|
|
(UUID)elements[2],
|
| 409 |
|
|
(UUID)elements[3],
|
| 410 |
|
|
(UUID)elements[4],
|
| 411 |
|
|
(Integer)elements[5],
|
| 412 |
|
|
(String)elements[6],
|
| 413 |
|
|
vocRepresentations,
|
| 414 |
|
|
isAvailableForTaxon,
|
| 415 |
|
|
isAvailableForTaxonName,
|
| 416 |
3037370e
|
Katja Luther
|
isAvailableForOccurrence,
|
| 417 |
4d68581f
|
Katja Luther
|
(String)elements[12],
|
| 418 |
|
|
isSupportsCategoricalData,
|
| 419 |
|
|
isSupportsQuantitativeData,
|
| 420 |
|
|
supportedCategoricalDtos,
|
| 421 |
|
|
recommendedModifierDtos,
|
| 422 |
|
|
recommendedMeasurementUnitsDtos,
|
| 423 |
|
|
recommendedStatisticalMeasuresDtos)
|
| 424 |
5edd1fbf
|
Katja Luther
|
;
|
| 425 |
|
|
termDto.setUri((URI)elements[9]);
|
| 426 |
|
|
termDto.setMedia(mediaUuids);
|
| 427 |
|
|
|
| 428 |
|
|
|
| 429 |
|
|
dtoMap.put(uuid, termDto);
|
| 430 |
|
|
dtos.add(termDto);
|
| 431 |
|
|
}
|
| 432 |
|
|
}
|
| 433 |
|
|
return dtos;
|
| 434 |
|
|
}
|
| 435 |
|
|
|
| 436 |
62d28a57
|
Katja Luther
|
|
| 437 |
|
|
}
|