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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.name;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNull;
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import junit.framework.Assert;
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import org.apache.log4j.Logger;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Test;
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import eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.ZoologicalName;
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import eu.etaxonomy.cdm.model.reference.IBook;
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import eu.etaxonomy.cdm.model.reference.IGeneric;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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* @author a.mueller
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* @created 26.11.2008
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* @version 1.0
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*/
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public class NonViralNameDefaultCacheStrategyTest {
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private static final Logger logger = Logger.getLogger(NonViralNameDefaultCacheStrategyTest.class);
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private NonViralNameDefaultCacheStrategy strategy;
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private static final String familyNameString = "Familia";
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private static final String genusNameString = "Genus";
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private static final String speciesNameString = "Abies alba";
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private static final String subSpeciesNameString = "Abies alba subsp. beta";
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private static final String appendedPhraseString = "app phrase";
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private static final String authorString = "L.";
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private static final String exAuthorString = "Exaut.";
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private static final String basAuthorString = "Basio, A.";
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private static final String exBasAuthorString = "ExBas. N.";
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private BotanicalName familyName;
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private BotanicalName genusName;
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private BotanicalName subGenusName;
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private BotanicalName speciesName;
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private BotanicalName subSpeciesName;
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private INomenclaturalAuthor author;
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private INomenclaturalAuthor exAuthor;
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private INomenclaturalAuthor basAuthor;
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private INomenclaturalAuthor exBasAuthor;
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private ReferenceBase citationRef;
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private ReferenceFactory refFactory;
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@BeforeClass
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public static void setUpBeforeClass() {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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}
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/**
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* @throws java.lang.Exception
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*/
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@Before
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public void setUp() throws Exception {
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refFactory = ReferenceFactory.newInstance();
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strategy = NonViralNameDefaultCacheStrategy.NewInstance();
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familyName = BotanicalName.PARSED_NAME(familyNameString, Rank.FAMILY());
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genusName = BotanicalName.PARSED_NAME(genusNameString, Rank.GENUS());
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subGenusName = BotanicalName.NewInstance(Rank.SUBGENUS());
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subGenusName.setGenusOrUninomial("Genus");
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subGenusName.setInfraGenericEpithet("InfraGenericPart");
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speciesName = BotanicalName.PARSED_NAME(speciesNameString);
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subSpeciesName = BotanicalName.PARSED_NAME(subSpeciesNameString);
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author = Person.NewInstance();
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author.setNomenclaturalTitle(authorString);
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exAuthor = Person.NewInstance();
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exAuthor.setNomenclaturalTitle(exAuthorString);
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basAuthor = Person.NewInstance();
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basAuthor.setNomenclaturalTitle(basAuthorString);
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exBasAuthor = Person.NewInstance();
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exBasAuthor.setNomenclaturalTitle(exBasAuthorString);
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}
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//**************************** TESTS **************************************************
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getTitleCache(eu.etaxonomy.cdm.model.name.NonViralName)}.
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*/
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@Test
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public void testGetTitleCache() {
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logger.warn("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getFullTitleCache(eu.etaxonomy.cdm.model.name.NonViralName)}.
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*/
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@Test
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public void testGetFullTitleCache() {
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logger.warn("Not yet implemented");
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getNameCache(eu.etaxonomy.cdm.model.name.NonViralName)}.
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*/
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@Test
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public void testGetNameCache() {
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assertEquals("Species Name should be Abies alba", speciesNameString, speciesName.getNameCache());
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speciesName.setNameCache("Any species");
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assertEquals("Species Name should be Any species", "Any species", speciesName.getNameCache());
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assertEquals("Species Name should be Any species", "Any species", speciesName.getTitleCache());
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assertEquals("subSpeciesNameString should be correct", subSpeciesNameString, subSpeciesName.getNameCache());
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BotanicalName botName = BotanicalName.NewInstance(Rank.VARIETY());
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botName.setGenusOrUninomial("Lepidocaryum");
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botName.setSpecificEpithet("tenue");
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botName.setInfraSpecificEpithet("tenue");
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assertEquals("", "Lepidocaryum tenue var. tenue", botName.getNameCache());
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BotanicalName specName = BotanicalName.NewInstance(Rank.SPECIES());
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specName.setGenusOrUninomial("Genus");
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specName.setSpecificEpithet("");
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assertEquals("Empty species string must not result in trailing whitespace", "Genus", specName.getNameCache());
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}
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/**
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getAuthorshipCache(eu.etaxonomy.cdm.model.name.NonViralName)}.
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*/
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@Test
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public void testGetAuthorshipCache() {
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this.speciesName.setCombinationAuthorTeam(author);
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assertEquals(author.getNomenclaturalTitle(), speciesName.getAuthorshipCache());
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this.speciesName.setBasionymAuthorTeam(basAuthor);
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String expected = strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+author.getNomenclaturalTitle();
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assertEquals(expected, speciesName.getAuthorshipCache());
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String authorshipcache = "authorshipcache";
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speciesName.setAuthorshipCache(authorshipcache);
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assertEquals(authorshipcache, speciesName.getAuthorshipCache());
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speciesName.setCombinationAuthorTeam(exAuthor);
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assertEquals(authorshipcache, speciesName.getAuthorshipCache()); //cache is protected
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assertEquals(speciesNameString + " " + authorshipcache, speciesName.getFullTitleCache());
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//unprotected
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speciesName.setProtectedAuthorshipCache(false);
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String atomizedAuthorCache = strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+exAuthor.getNomenclaturalTitle();
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assertEquals(atomizedAuthorCache, speciesName.getAuthorshipCache());
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String atomizedTitleCache = speciesNameString + " "+ strategy.getBasionymStart()+ basAuthor.getNomenclaturalTitle()+strategy.getBasionymEnd()+strategy.getBasionymAuthorCombinationAuthorSeperator()+exAuthor.getNomenclaturalTitle();
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assertEquals(atomizedTitleCache, speciesName.getTitleCache());
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assertEquals(atomizedTitleCache, speciesName.getFullTitleCache());
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}
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@Test
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public void testCacheListener() {
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ReferenceBase ref = refFactory.newGeneric();
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ref.setTitleCache("GenericRef");
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this.subSpeciesName.setNomenclaturalReference(ref);
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Assert.assertEquals("Expected full title cache has error", "Abies alba subsp. beta, GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setCombinationAuthorTeam(author);
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subSpeciesName.setBasionymAuthorTeam(basAuthor);
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Assert.assertEquals("Expected full title cache has error", "Abies alba subsp. beta (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
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//cascade name change to fullTitleCache
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subSpeciesName.setRank(Rank.SPECIES());
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subSpeciesName.setProtectedNameCache(true);
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Assert.assertNull("name cache should be null", subSpeciesName.getNameCache());
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subSpeciesName.setProtectedNameCache(false);
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Assert.assertNotNull("name cache should not be null", subSpeciesName.getNameCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L.", subSpeciesName.getTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba", subSpeciesName.getNameCache());
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subSpeciesName.setProtectedNameCache(true);
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subSpeciesName.setSpecificEpithet("gamma");
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L.", subSpeciesName.getTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba", subSpeciesName.getNameCache());
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//make original status
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subSpeciesName.setRank(Rank.SUBSPECIES());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) L., GenericRef", subSpeciesName.getFullTitleCache());
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//author change
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author.setNomenclaturalTitle("M.");
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Assert.assertEquals("Expected full title cache has error", "(Basio, A.) M.", subSpeciesName.getAuthorshipCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M.", subSpeciesName.getTitleCache());
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//protectedTitleCache
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subSpeciesName.setProtectedTitleCache(true);
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subSpeciesName.setProtectedNameCache(false);
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subSpeciesName.setGenusOrUninomial("Pinus");
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subSpeciesName.setSpecificEpithet("alba");
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Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta", subSpeciesName.getNameCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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Assert.assertEquals("Expected full title cache has error", "Abies alba (Basio, A.) M.", subSpeciesName.getTitleCache());
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subSpeciesName.setTitleCache("Pinus beta C.");
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Assert.assertEquals("Expected full title cache has error", "Pinus beta C., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setProtectedTitleCache(false);
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Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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//protected full title cache set
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subSpeciesName.setFullTitleCache("ABC");
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Assert.assertEquals("Expected full title cache has error", "ABC", subSpeciesName.getFullTitleCache());
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subSpeciesName.setProtectedFullTitleCache(false);
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Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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//protected title cache set
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subSpeciesName.setProtectedTitleCache(false);
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Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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//protectedNameCache set
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subSpeciesName.setProtectedNameCache(true);
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Assert.assertEquals("Expected full title cache has error", "Pinus alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setNameCache("P. alba subsp. beta");
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Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setGenusOrUninomial("A.");
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subSpeciesName.setProtectedNameCache(false);
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setNameCache("P. alba subsp. beta");
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Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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//protected authorship
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subSpeciesName.setProtectedAuthorshipCache(true);
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Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) M., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setAuthorshipCache("Ciard.");
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Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta Ciard., GenericRef", subSpeciesName.getFullTitleCache());
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author.setNomenclaturalTitle("X.");
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subSpeciesName.setProtectedAuthorshipCache(false);
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Assert.assertEquals("Expected full title cache has error", "P. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
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//clear
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subSpeciesName.setProtectedNameCache(false);
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
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//appended phrase
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subSpeciesName.setProtectedNameCache(true);
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setAppendedPhrase("app phrase");
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setProtectedNameCache(false);
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta app phrase (Basio, A.) X., GenericRef", subSpeciesName.getFullTitleCache());
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subSpeciesName.setAppendedPhrase("app2 phrase2");
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subSpeciesName.setProtectedNameCache(true);
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Assert.assertNull("NameCache should be null", subSpeciesName.getNameCache());
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subSpeciesName.setProtectedNameCache(false);
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subSpeciesName.setAppendedPhrase(null);
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//ref + nomRef
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ReferenceBase book = refFactory.newBook();
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book.setTitle("Booktitle");
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Assert.assertNotNull("TitleCache should not be null", subSpeciesName.getTitleCache());
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subSpeciesName.setNomenclaturalReference(book);
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subSpeciesName.setNomenclaturalMicroReference("22");
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Assert.assertEquals("Expected full title cache has error", "A. alba subsp. beta (Basio, A.) X., Booktitle: 22", subSpeciesName.getFullTitleCache());
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subSpeciesName.setProtectedTitleCache(true);
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Assert.assertNotNull("TitleCache should not be null", subSpeciesName.getTitleCache());
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//year
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ZoologicalName zooName = ZoologicalName.NewInstance(Rank.SPECIES());
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zooName.setGenusOrUninomial("Homo");
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zooName.setSpecificEpithet("sapiens");
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zooName.setBasionymAuthorTeam(basAuthor);
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zooName.setCombinationAuthorTeam(author);
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zooName.setNomenclaturalReference(book);
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zooName.setNomenclaturalMicroReference("22");
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Assert.assertEquals("Expected full title cache has error", "Homo sapiens (Basio, A.) X., Booktitle: 22", zooName.getFullTitleCache());
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zooName.setOriginalPublicationYear(1922);
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zooName.setPublicationYear(1948);
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Assert.assertEquals("Expected full title cache has error", "Homo sapiens (Basio, A., 1922) X., 1948, Booktitle: 22", zooName.getFullTitleCache());
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zooName.setOriginalPublicationYear(1923);
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zooName.setProtectedAuthorshipCache(true);
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Assert.assertNull("AuthorshipCache should be null", zooName.getAuthorshipCache());
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zooName.setProtectedAuthorshipCache(false);
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Assert.assertNotNull("AuthorshipCache should not be null", zooName.getAuthorshipCache());
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zooName.setPublicationYear(1949);
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zooName.setProtectedAuthorshipCache(true);
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Assert.assertNull("AuthorshipCache should be null", zooName.getAuthorshipCache());
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}
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301
|
|
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302
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/**
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|
303
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getTaggedName(eu.etaxonomy.cdm.model.name.NonViralName)}.
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|
304
|
*/
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|
305
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@Test
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|
306
|
public void testGetTaggedName() {
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|
307
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logger.warn("testGetTaggedName yet implemented");
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|
308
|
}
|
|
309
|
|
|
310
|
/**
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311
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* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#setNameAuthorSeperator(java.lang.String)}.
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|
312
|
*/
|
|
313
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@Test
|
|
314
|
public void testGetSetNameAuthorSeperator() {
|
|
315
|
String authorSeparator = "authorSeparator";
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|
316
|
strategy.setNameAuthorSeperator(authorSeparator);
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|
317
|
assertEquals(authorSeparator, strategy.getNameAuthorSeperator());
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|
318
|
strategy.setNameAuthorSeperator(null);
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|
319
|
assertNull(strategy.getNameAuthorSeperator());
|
|
320
|
}
|
|
321
|
|
|
322
|
/**
|
|
323
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#setBasionymStart(java.lang.String)}.
|
|
324
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getBasionymStart()}.
|
|
325
|
*/
|
|
326
|
@Test
|
|
327
|
public void testGetSetBasionymStart() {
|
|
328
|
String basStart = "start";
|
|
329
|
strategy.setBasionymStart(basStart);
|
|
330
|
assertEquals(basStart, strategy.getBasionymStart());
|
|
331
|
strategy.setBasionymStart(null);
|
|
332
|
assertNull(strategy.getBasionymStart());
|
|
333
|
}
|
|
334
|
|
|
335
|
/**
|
|
336
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#setBasionymEnd(java.lang.String)}.
|
|
337
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getBasionymEnd()}.
|
|
338
|
*/
|
|
339
|
@Test
|
|
340
|
public void testGetSetBasionymEnd() {
|
|
341
|
String basEnd = "end";
|
|
342
|
strategy.setBasionymEnd(basEnd);
|
|
343
|
assertEquals(basEnd, strategy.getBasionymEnd());
|
|
344
|
strategy.setBasionymEnd(null);
|
|
345
|
assertNull(strategy.getBasionymEnd());
|
|
346
|
}
|
|
347
|
|
|
348
|
/**
|
|
349
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#setExAuthorSeperator(java.lang.String)}.
|
|
350
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getExAuthorSeperator()}.
|
|
351
|
*/
|
|
352
|
@Test
|
|
353
|
public void testGetSetExAuthorSeperator() {
|
|
354
|
String exAuthorSeparator = "exAuthorSeparator";
|
|
355
|
strategy.setExAuthorSeperator(exAuthorSeparator);
|
|
356
|
assertEquals(exAuthorSeparator, strategy.getExAuthorSeperator());
|
|
357
|
strategy.setExAuthorSeperator(null);
|
|
358
|
assertNull(strategy.getExAuthorSeperator());
|
|
359
|
}
|
|
360
|
|
|
361
|
/**
|
|
362
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#setBasionymAuthorCombinationAuthorSeperator(java.lang.CharSequence)}.
|
|
363
|
* Test method for {@link eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy#getBasionymAuthorCombinationAuthorSeperator()}.
|
|
364
|
*/
|
|
365
|
@Test
|
|
366
|
public void testSetBasionymAuthorCombinationAuthorSeperator() {
|
|
367
|
String basComSeparator = "basComSeparator";
|
|
368
|
strategy.setBasionymAuthorCombinationAuthorSeperator(basComSeparator);
|
|
369
|
assertEquals(basComSeparator, strategy.getBasionymAuthorCombinationAuthorSeperator());
|
|
370
|
strategy.setBasionymAuthorCombinationAuthorSeperator(null);
|
|
371
|
assertNull(strategy.getBasionymAuthorCombinationAuthorSeperator());
|
|
372
|
}
|
|
373
|
|
|
374
|
@Test
|
|
375
|
public void testGetInfraGericNames(){
|
|
376
|
String author = "Anyauthor";
|
|
377
|
NonViralName nonViralName = NonViralName.NewInstance(Rank.SUBGENUS());
|
|
378
|
nonViralName.setGenusOrUninomial("Genus");
|
|
379
|
nonViralName.setInfraGenericEpithet("subgenus");
|
|
380
|
nonViralName.setAuthorshipCache(author);
|
|
381
|
//test ordinary infrageneric
|
|
382
|
String subGenusNameCache = strategy.getInfraGenusNameCache(nonViralName);
|
|
383
|
assertEquals("Subgenus name should be 'Genus subg. subgenus'.", "Genus subg. subgenus", subGenusNameCache);
|
|
384
|
String subGenusTitle = strategy.getTitleCache(nonViralName);
|
|
385
|
assertEquals("Subgenus name should be 'Genus subg. subgenus Anyauthor'.", "Genus subg. subgenus Anyauthor", subGenusTitle);
|
|
386
|
//test species aggregates and species groups
|
|
387
|
nonViralName.setRank(Rank.SPECIESAGGREGATE());
|
|
388
|
nonViralName.setSpecificEpithet("species");
|
|
389
|
String aggrNameCache = strategy.getInfraGenusNameCache(nonViralName);
|
|
390
|
assertEquals("Species aggregate name should be 'Genus species aggr.'.", "Genus species aggr.", aggrNameCache);
|
|
391
|
String aggrNameTitle = strategy.getTitleCache(nonViralName);
|
|
392
|
Assert.assertTrue("Species aggregate should not include author information.", aggrNameTitle.indexOf(author) == -1);
|
|
393
|
assertEquals("Species aggregate name should be 'Genus species aggr.'.", "Genus species aggr.", aggrNameTitle);
|
|
394
|
nonViralName.setRank(Rank.SPECIESGROUP());
|
|
395
|
String groupNameTitle = strategy.getTitleCache(nonViralName);
|
|
396
|
assertEquals("Species group name should be 'Genus species group'.", "Genus species group", groupNameTitle);
|
|
397
|
|
|
398
|
}
|
|
399
|
|
|
400
|
}
|