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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import eu.etaxonomy.cdm.model.common.OrderedTermBase;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownRankException;
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import org.apache.log4j.Logger;
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import java.util.*;
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import javax.persistence.*;
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/**
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* http://rs.tdwg.org/ontology/voc/TaxonRank#TaxonRankTerm
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* @author m.doering
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* @version 1.0
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* @created 08-Nov-2007 13:06:46
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*/
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@Entity
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public class Rank extends OrderedTermBase<Rank> {
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static Logger logger = Logger.getLogger(Rank.class);
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private static final UUID uuidEmpire = UUID.fromString("ac470211-1586-4b24-95ca-1038050b618d");
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private static final UUID uuidDomain = UUID.fromString("ffca6ec8-8b88-417b-a6a0-f7c992aac19b");
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private static final UUID uuidSuperkingdom = UUID.fromString("64223610-7625-4cfd-83ad-b797bf7f0edd");
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private static final UUID uuidKingdom = UUID.fromString("fbe7109d-66b3-498c-a697-c6c49c686162");
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private static final UUID uuidSubkingdom = UUID.fromString("a71bd9d8-f3ab-4083-afb5-d89315d71655");
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private static final UUID uuidInfrakingdom = UUID.fromString("1e37930c-86cf-44f6-90fd-7822928df260");
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private static final UUID uuidSuperphylum = UUID.fromString("0d0cecb1-e254-4607-b210-6801e7ecbb04");
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private static final UUID uuidPhylum = UUID.fromString("773430d2-76b4-438c-b817-97a543a33287");
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private static final UUID uuidSubphylum = UUID.fromString("23a9b6ff-9408-49c9-bd9e-7a2ca5ab4725");
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private static final UUID uuidInfraphylum = UUID.fromString("1701de3a-7693-42a5-a2d3-42697f944190");
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private static final UUID uuidSuperdivision = UUID.fromString("a735a48f-4fc8-49a7-ae0c-6a984f658131");
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private static final UUID uuidDivision = UUID.fromString("7e56f5cc-123a-4fd1-8cbb-6fd80358b581");
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private static final UUID uuidSubdivision = UUID.fromString("931c840f-7a6b-4d76-ad38-bfdd77d7b2e8");
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private static final UUID uuidInfradivision = UUID.fromString("c0ede273-be52-4dee-b411-66ee08d30c94");
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private static final UUID uuidSuperclass = UUID.fromString("e65b4e1a-21ec-428d-9b9f-e87721ab967c");
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private static final UUID uuidClass = UUID.fromString("f23d14c4-1d34-4ee6-8b4e-eee2eb9a3daf");
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private static final UUID uuidSubclass = UUID.fromString("8cb26733-e2f5-46cb-ab5c-f99254f877aa");
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private static final UUID uuidInfraclass = UUID.fromString("ad23cfda-879a-4021-8629-c54d27caf717");
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private static final UUID uuidSuperorder = UUID.fromString("c8c67a22-301a-4219-b882-4a49121232ff");
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private static final UUID uuidOrder = UUID.fromString("b0785a65-c1c1-4eb4-88c7-dbd3df5aaad1");
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private static final UUID uuidSuborder = UUID.fromString("768ad378-fa85-42ab-b668-763225832f57");
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private static final UUID uuidInfraorder = UUID.fromString("84099182-a6f5-47d7-8586-33c9e9955a10");
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private static final UUID uuidSuperfamily = UUID.fromString("2cfa510a-dcea-4a03-b66a-b1528f9b0796");
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private static final UUID uuidFamily = UUID.fromString("af5f2481-3192-403f-ae65-7c957a0f02b6");
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private static final UUID uuidSubfamily = UUID.fromString("862526ee-7592-4760-a23a-4ff3641541c5");
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private static final UUID uuidInfrafamily = UUID.fromString("c3f2e3bb-6eef-4a26-9fb7-b14f4c8c5e4f");
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private static final UUID uuidSupertribe = UUID.fromString("11e94828-8c61-499b-87d6-1de35ce2c51c");
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private static final UUID uuidTribe = UUID.fromString("4aa6890b-0363-4899-8d7c-ee0cb78e6166");
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private static final UUID uuidSubtribe = UUID.fromString("ae41ecc5-5165-4126-9d24-79939ae5d822");
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private static final UUID uuidInfratribe = UUID.fromString("1ec02e8f-f2b7-4c65-af9f-b436b34c79a3");
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private static final UUID uuidSupragenericTaxon = UUID.fromString("1fdc0b93-c354-441a-8406-091e0303ff5c");
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private static final UUID uuidGenus = UUID.fromString("1b11c34c-48a8-4efa-98d5-84f7f66ef43a");
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private static final UUID uuidSubgenus = UUID.fromString("78786e16-2a70-48af-a608-494023b91904");
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private static final UUID uuidInfragenus = UUID.fromString("a9972969-82cd-4d54-b693-a096422f13fa");
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private static final UUID uuidSection = UUID.fromString("3edff68f-8527-49b5-bf91-7e4398bb975c");
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private static final UUID uuidSubsection = UUID.fromString("d20f5b61-d463-4448-8f8a-c1ff1f262f59");
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private static final UUID uuidSeries = UUID.fromString("d7381ecf-48f8-429b-9c54-f461656978cd");
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private static final UUID uuidSubseries = UUID.fromString("80c9a263-f4db-4a13-b6c2-b7fec1aa1200");
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private static final UUID uuidSpeciesAggregate = UUID.fromString("1ecae058-4217-4f75-9c27-6d8ba099ac7a");
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private static final UUID uuidInfragenericTaxon = UUID.fromString("41bcc6ac-37d3-4fd4-bb80-3cc5b04298b9");
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private static final UUID uuidSpecies = UUID.fromString("b301f787-f319-4ccc-a10f-b4ed3b99a86d");
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private static final UUID uuidSubspecificAggregate = UUID.fromString("72c248b9-027d-4402-b375-dd4f0850c9ad");
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private static final UUID uuidSubspecies = UUID.fromString("462a7819-8b00-4190-8313-88b5be81fad5");
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private static final UUID uuidInfraspecies = UUID.fromString("f28ebc9e-bd50-4194-9af1-42f5cb971a2c");
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private static final UUID uuidVariety = UUID.fromString("d5feb6a5-af5c-45ef-9878-bb4f36aaf490");
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private static final UUID uuidBioVariety = UUID.fromString("a3a364cb-1a92-43fc-a717-3c44980a0991");
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private static final UUID uuidPathoVariety = UUID.fromString("2f4f4303-a099-47e3-9048-d749d735423b");
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private static final UUID uuidSubvariety = UUID.fromString("9a83862a-7aee-480c-a98d-4bceaf8712ca");
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private static final UUID uuidSubsubvariety = UUID.fromString("bff22f84-553a-4429-a4e7-c4b3796c3a18");
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private static final UUID uuidConvar = UUID.fromString("2cc740c9-cebb-43c8-9b06-1bef79e6a56a");
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private static final UUID uuidForm = UUID.fromString("0461281e-458a-47b9-8d41-19a3d39356d5");
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private static final UUID uuidSpecialForm = UUID.fromString("bed20aee-2f5a-4635-9c02-eff06246d067");
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private static final UUID uuidSubform = UUID.fromString("47cfc5b0-0fb7-4ceb-b61d-e1dd8de8b569");
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private static final UUID uuidSubsubform = UUID.fromString("1c8ac389-4349-4ae0-87be-7239f6635068");
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private static final UUID uuidInfraspecificTaxon = UUID.fromString("eb75c27d-e154-4570-9d96-227b2df60474");
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private static final UUID uuidCandidate = UUID.fromString("ead9a1f5-dfd4-4de2-9121-70a47accb10b");
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private static final UUID uuidDenominationClass = UUID.fromString("49bdf74a-2170-40ed-8be2-887a0db517bf");
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private static final UUID uuidGrex = UUID.fromString("08dcb4ff-ac58-48a3-93af-efb3d836ac84");
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private static final UUID uuidGraftChimaera = UUID.fromString("6b4063bc-f934-4796-9bf3-0ef3aea5c1cb");
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private static final UUID uuidCultivarGroup = UUID.fromString("d763e7d3-e7de-4bb1-9d75-225ca6948659");
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private static final UUID uuidCultivar = UUID.fromString("5e98415b-dc6e-440b-95d6-ea33dbb39ad0");
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public Rank() {
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super();
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}
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public Rank(String term, String label) {
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super(term, label);
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}
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public static final Rank EMPIRE(){
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return (Rank)findByUuid(uuidEmpire);
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}
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public static final Rank DOMAIN(){
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return (Rank)findByUuid(uuidDomain);
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}
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public static final Rank SUPERKINGDOM(){
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return (Rank)findByUuid(uuidSuperkingdom);
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}
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public static final Rank KINGDOM(){
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return (Rank)findByUuid(uuidKingdom);
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}
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public static final Rank SUBKINGDOM(){
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return (Rank)findByUuid(uuidSubkingdom);
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}
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public static final Rank INFRAKINGDOM(){
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return (Rank)findByUuid(uuidInfrakingdom);
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}
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public static final Rank SUPERPHYLUM(){
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return (Rank)findByUuid(uuidSuperphylum);
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}
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public static final Rank PHYLUM(){
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return (Rank)findByUuid(uuidPhylum);
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}
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public static final Rank SUBPHYLUM(){
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return (Rank)findByUuid(uuidSubphylum);
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}
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public static final Rank INFRAPHYLUM(){
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return (Rank)findByUuid(uuidInfraphylum);
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}
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public static final Rank SUPERDIVISION(){
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return (Rank)findByUuid(uuidSuperdivision);
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}
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public static final Rank DIVISION(){
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return (Rank)findByUuid(uuidDivision);
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}
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public static final Rank SUBDIVISION(){
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return (Rank)findByUuid(uuidSubdivision);
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}
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public static final Rank INFRADIVISION(){
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return (Rank)findByUuid(uuidInfradivision);
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}
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public static final Rank SUPERCLASS(){
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return (Rank)findByUuid(uuidSuperclass);
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}
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public static final Rank CLASS(){
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return (Rank)findByUuid(uuidClass);
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}
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public static final Rank SUBCLASS(){
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return (Rank)findByUuid(uuidSubclass);
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}
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public static final Rank INFRACLASS(){
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return (Rank)findByUuid(uuidInfraclass);
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}
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public static final Rank SUPERORDER(){
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return (Rank)findByUuid(uuidSuperorder);
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}
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public static final Rank ORDER(){
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return (Rank)findByUuid(uuidOrder);
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}
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public static final Rank SUBORDER(){
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return (Rank)findByUuid(uuidSuborder);
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}
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public static final Rank INFRAORDER(){
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return (Rank)findByUuid(uuidInfraorder);
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}
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public static final Rank SUPERFAMILY(){
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return (Rank)findByUuid(uuidSuperfamily);
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}
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public static final Rank FAMILY(){
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return (Rank)findByUuid(uuidFamily);
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}
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public static final Rank SUBFAMILY(){
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return (Rank)findByUuid(uuidSubfamily);
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}
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public static final Rank INFRAFAMILY(){
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return (Rank)findByUuid(uuidInfrafamily);
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}
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public static final Rank SUPERTRIBE(){
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return (Rank)findByUuid(uuidSupertribe);
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}
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public static final Rank TRIBE(){
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return (Rank)findByUuid(uuidTribe);
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}
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public static final Rank SUBTRIBE(){
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return (Rank)findByUuid(uuidSubtribe);
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}
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public static final Rank INFRATRIBE(){
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return (Rank)findByUuid(uuidInfratribe);
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}
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public static final Rank SUPRAGENERICTAXON(){
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return (Rank)findByUuid(uuidSupragenericTaxon);
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}
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public static final Rank GENUS(){
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return (Rank)findByUuid(uuidGenus);
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}
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public static final Rank SUBGENUS(){
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return (Rank)findByUuid(uuidSubgenus);
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}
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public static final Rank INFRAGENUS(){
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return (Rank)findByUuid(uuidInfragenus);
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}
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public static final Rank SECTION(){
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return (Rank)findByUuid(uuidSection);
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}
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public static final Rank SUBSECTION(){
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return (Rank)findByUuid(uuidSubsection);
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}
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public static final Rank SERIES(){
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return (Rank)findByUuid(uuidSeries);
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}
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public static final Rank SUBSERIES(){
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return (Rank)findByUuid(uuidSubseries);
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}
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public static final Rank SPECIESAGGREGATE(){
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return (Rank)findByUuid(uuidSpeciesAggregate);
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}
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public static final Rank INFRAGENERICTAXON(){
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return (Rank)findByUuid(uuidInfragenericTaxon);
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}
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public static final Rank SPECIES(){
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return (Rank)findByUuid(uuidSpecies);
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}
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public static final Rank SUBSPECIFICAGGREGATE(){
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return (Rank)findByUuid(uuidSubspecificAggregate);
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}
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public static final Rank SUBSPECIES(){
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return (Rank)findByUuid(uuidSubspecies);
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}
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public static final Rank INFRASPECIES(){
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return (Rank)findByUuid(uuidInfraspecies);
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}
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public static final Rank VARIETY(){
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return (Rank)findByUuid(uuidVariety);
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}
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public static final Rank BIOVARIETY(){
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return (Rank)findByUuid(uuidBioVariety);
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}
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public static final Rank PATHOVARIETY(){
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return (Rank)findByUuid(uuidPathoVariety);
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}
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public static final Rank SUBVARIETY(){
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return (Rank)findByUuid(uuidSubvariety);
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}
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public static final Rank SUBSUBVARIETY(){
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return (Rank)findByUuid(uuidSubsubvariety);
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}
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public static final Rank CONVAR(){
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return (Rank)findByUuid(uuidConvar);
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}
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public static final Rank FORM(){
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return (Rank)findByUuid(uuidForm);
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}
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public static final Rank SPECIALFORM(){
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return (Rank)findByUuid(uuidSpecialForm);
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}
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public static final Rank SUBFORM(){
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return (Rank)findByUuid(uuidSubform);
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}
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public static final Rank SUBSUBFORM(){
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return (Rank)findByUuid(uuidSubsubform);
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}
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public static final Rank INFRASPECIFICTAXON(){
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return (Rank)findByUuid(uuidInfraspecificTaxon);
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}
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public static final Rank CANDIDATE(){
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return (Rank)findByUuid(uuidCandidate);
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}
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public static final Rank DENOMINATIONCLASS(){
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return (Rank)findByUuid(uuidDenominationClass);
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}
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public static final Rank GREX(){
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return (Rank)findByUuid(uuidGrex);
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}
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public static final Rank GRAFTCHIMAERA(){
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return (Rank)findByUuid(uuidGraftChimaera);
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}
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public static final Rank CULTIVARGROUP(){
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return (Rank)findByUuid(uuidCultivarGroup);
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}
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public static final Rank CULTIVAR(){
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return (Rank)findByUuid(uuidCultivar);
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|
283
|
}
|
|
284
|
|
|
285
|
|
|
286
|
/**
|
|
287
|
* True, if this Rank is higher than GENUS, else false.
|
|
288
|
* @return
|
|
289
|
*/
|
|
290
|
public boolean isSupraGeneric(){
|
|
291
|
return (this.isHigher(Rank.GENUS()));
|
|
292
|
}
|
|
293
|
|
|
294
|
/**
|
|
295
|
* True, if this Rank equals GENUS, else false.
|
|
296
|
* @return
|
|
297
|
*/
|
|
298
|
public boolean isGenus(){
|
|
299
|
return (this.equals(Rank.GENUS()));
|
|
300
|
}
|
|
301
|
|
|
302
|
/**
|
|
303
|
* True, if this Rank is lower than GENUS and higher than SPECIES, else false.
|
|
304
|
* @return
|
|
305
|
*/
|
|
306
|
public boolean isInfraGeneric(){
|
|
307
|
return (this.isLower(Rank.GENUS()) && this.isHigher(Rank.SPECIES()));
|
|
308
|
}
|
|
309
|
|
|
310
|
/**
|
|
311
|
* True, if this Rank equals SPECIES, else false.
|
|
312
|
* @return
|
|
313
|
*/
|
|
314
|
public boolean isSpecies(){
|
|
315
|
return (this.equals(Rank.SPECIES()));
|
|
316
|
}
|
|
317
|
|
|
318
|
/**
|
|
319
|
* True, if this Rank is lower than SPECIES, else false.
|
|
320
|
* @return
|
|
321
|
*/
|
|
322
|
public boolean isInfraSpecific(){
|
|
323
|
return (this.isLower(Rank.SPECIES()));
|
|
324
|
}
|
|
325
|
|
|
326
|
/**
|
|
327
|
* NOT YET COMPLETE !!
|
|
328
|
* @param strRank
|
|
329
|
* @return Rank
|
|
330
|
* @throws UnknownRankException
|
|
331
|
*/
|
|
332
|
public static Rank getRankByNameOrAbbreviation(String strRank)
|
|
333
|
throws UnknownRankException{
|
|
334
|
try {
|
|
335
|
return getRankByAbbreviation(strRank);
|
|
336
|
} catch (UnknownRankException e) {
|
|
337
|
return getRankByName(strRank);
|
|
338
|
}
|
|
339
|
}
|
|
340
|
|
|
341
|
|
|
342
|
/** TODO
|
|
343
|
* preliminary implementation for BotanicalNameParser
|
|
344
|
* * not yet complete
|
|
345
|
*/
|
|
346
|
public static Rank getRankByAbbreviation(String abbrev) throws UnknownRankException{
|
|
347
|
if (abbrev == null){ throw new NullPointerException("abbrev is 'null' in getRankByAbbreviation");
|
|
348
|
}else if (abbrev.equalsIgnoreCase("reg.")){ return Rank.KINGDOM();
|
|
349
|
}else if (abbrev.equalsIgnoreCase("subreg.")){ return Rank.SUBKINGDOM();
|
|
350
|
}else if (abbrev.equalsIgnoreCase("phyl.")){return Rank.PHYLUM();
|
|
351
|
}else if (abbrev.equalsIgnoreCase("subphyl.")) { return Rank.SUBPHYLUM();
|
|
352
|
}else if (abbrev.equalsIgnoreCase("div.")) { return Rank.DIVISION();
|
|
353
|
}else if (abbrev.equalsIgnoreCase("subdiv.")) { return Rank.SUBDIVISION();
|
|
354
|
}else if (abbrev.equalsIgnoreCase("cl.")) { return Rank.CLASS();
|
|
355
|
}else if (abbrev.equalsIgnoreCase("subcl.")) { return Rank.SUBCLASS();
|
|
356
|
}else if (abbrev.equalsIgnoreCase("superor.")) { return Rank.SUPERORDER();
|
|
357
|
}else if (abbrev.equalsIgnoreCase("ordo")) { return Rank.ORDER();
|
|
358
|
}else if (abbrev.equalsIgnoreCase("subor.")) { return Rank.SUBORDER();
|
|
359
|
}else if (abbrev.equalsIgnoreCase("fam.")) { return Rank.FAMILY();
|
|
360
|
}else if (abbrev.equalsIgnoreCase("subfam.")) { return Rank.SUBFAMILY();
|
|
361
|
}else if (abbrev.equalsIgnoreCase("trib.")) { return Rank.TRIBE();
|
|
362
|
}else if (abbrev.equalsIgnoreCase("subtrib.")) { return Rank.SUBTRIBE();
|
|
363
|
}else if (abbrev.equalsIgnoreCase("gen.")) { return Rank.GENUS();
|
|
364
|
}else if (abbrev.equalsIgnoreCase("subg.")) { return Rank.SUBGENUS();
|
|
365
|
}else if (abbrev.equalsIgnoreCase("sect.")) { return Rank.SECTION();
|
|
366
|
}else if (abbrev.equalsIgnoreCase("subsect.")) { return Rank.SUBSECTION();
|
|
367
|
}else if (abbrev.equalsIgnoreCase("ser.")) { return Rank.SERIES();
|
|
368
|
}else if (abbrev.equalsIgnoreCase("subser.")) { return Rank.SUBSERIES();
|
|
369
|
}else if (abbrev.equalsIgnoreCase("aggr.")) { return Rank.SPECIESAGGREGATE();
|
|
370
|
//TODO
|
|
371
|
//}else if (abbrev.equalsIgnoreCase("group")) { return Rank.SPECIESGROUP();
|
|
372
|
}else if (abbrev.equalsIgnoreCase("sp.")) { return Rank.SPECIES();
|
|
373
|
}else if (abbrev.equalsIgnoreCase("subsp.")) { return Rank.SUBSPECIES();
|
|
374
|
}else if (abbrev.equalsIgnoreCase("convar.")) { return Rank.CONVAR();
|
|
375
|
}else if (abbrev.equalsIgnoreCase("var.")) { return Rank.VARIETY();
|
|
376
|
}else if (abbrev.equalsIgnoreCase("subvar.")) { return Rank.SUBVARIETY();
|
|
377
|
}else if (abbrev.equalsIgnoreCase("f.")) { return Rank.FORM();
|
|
378
|
}else if (abbrev.equalsIgnoreCase("subf.")) { return Rank.SUBFORM();
|
|
379
|
//TODO
|
|
380
|
//}else if (abbrev.equalsIgnoreCase("f.spec.")) { return Rank.FORMA_SPEC();
|
|
381
|
}else if (abbrev.equalsIgnoreCase("t.infgen.")) { return Rank.INFRAGENERICTAXON();
|
|
382
|
}else if (abbrev.equalsIgnoreCase("t.infr.")) { return Rank.INFRASPECIFICTAXON();
|
|
383
|
}else {
|
|
384
|
if (abbrev == null){
|
|
385
|
abbrev = "(null)";
|
|
386
|
}
|
|
387
|
throw new UnknownRankException("Unknown rank abbreviation: " + abbrev);
|
|
388
|
}
|
|
389
|
}
|
|
390
|
|
|
391
|
/** TODO
|
|
392
|
* preliminary implementation for BotanicalNameParser
|
|
393
|
* not yet complete
|
|
394
|
*/
|
|
395
|
public static Rank getRankByName(String rankName)
|
|
396
|
throws UnknownRankException{
|
|
397
|
if (rankName.equalsIgnoreCase("Regnum")){ return Rank.KINGDOM();
|
|
398
|
}else if (rankName.equalsIgnoreCase("Subregnum")){ return Rank.SUBKINGDOM();
|
|
399
|
}else if (rankName.equalsIgnoreCase("Phylum")){ return Rank.PHYLUM();
|
|
400
|
}else if (rankName.equalsIgnoreCase("subphylum")){ return Rank.SUBPHYLUM();
|
|
401
|
}else if (rankName.equalsIgnoreCase("Divisio")){ return Rank.DIVISION();
|
|
402
|
}else if (rankName.equalsIgnoreCase("Subdivisio")){ return Rank.SUBDIVISION();
|
|
403
|
}else if (rankName.equalsIgnoreCase("Classis")){ return Rank.CLASS();
|
|
404
|
}else if (rankName.equalsIgnoreCase("Subclassis")){ return Rank.SUBCLASS();
|
|
405
|
}else if (rankName.equalsIgnoreCase("Superordo")){ return Rank.SUPERORDER();
|
|
406
|
}else if (rankName.equalsIgnoreCase("Ordo")){ return Rank.ORDER();
|
|
407
|
}else if (rankName.equalsIgnoreCase("Subordo")){ return Rank.SUBORDER();
|
|
408
|
}else if (rankName.equalsIgnoreCase("Familia")){ return Rank.FAMILY();
|
|
409
|
}else if (rankName.equalsIgnoreCase("Subfamilia")){ return Rank.SUBFAMILY();
|
|
410
|
}else if (rankName.equalsIgnoreCase("Tribus")){ return Rank.TRIBE();
|
|
411
|
}else if (rankName.equalsIgnoreCase("Subtribus")){ return Rank.SUBTRIBE();
|
|
412
|
}else if (rankName.equalsIgnoreCase("Genus")){ return Rank.GENUS();
|
|
413
|
}else if (rankName.equalsIgnoreCase("Subgenus")){ return Rank.SUBGENUS();
|
|
414
|
}else if (rankName.equalsIgnoreCase("Sectio")){ return Rank.SECTION();
|
|
415
|
}else if (rankName.equalsIgnoreCase("Subsectio")){ return Rank.SUBSECTION();
|
|
416
|
}else if (rankName.equalsIgnoreCase("Series")){ return Rank.SERIES();
|
|
417
|
}else if (rankName.equalsIgnoreCase("Subseries")){ return Rank.SUBSERIES();
|
|
418
|
}else if (rankName.equalsIgnoreCase("Aggregate")){ return Rank.SPECIESAGGREGATE();
|
|
419
|
//TODO
|
|
420
|
//}else if (rankName.equalsIgnoreCase("Speciesgroup")){ return Rank.SPECIESGROUP();
|
|
421
|
}else if (rankName.equalsIgnoreCase("Species")){ return Rank.SPECIES();
|
|
422
|
}else if (rankName.equalsIgnoreCase("Subspecies")){ return Rank.SUBSPECIES();
|
|
423
|
}else if (rankName.equalsIgnoreCase("Convarietas")){ return Rank.CONVAR();
|
|
424
|
}else if (rankName.equalsIgnoreCase("Varietas")){ return Rank.VARIETY();
|
|
425
|
}else if (rankName.equalsIgnoreCase("Subvarietas")){ return Rank.SUBVARIETY();
|
|
426
|
}else if (rankName.equalsIgnoreCase("Forma")){ return Rank.FORM();
|
|
427
|
}else if (rankName.equalsIgnoreCase("Subforma")){ return Rank.SUBFORM();
|
|
428
|
}else if (rankName.equalsIgnoreCase("Forma spec.")){ return Rank.SPECIALFORM();
|
|
429
|
}else if (rankName.equalsIgnoreCase("tax.infragen.")){ return Rank.INFRAGENERICTAXON();
|
|
430
|
}else if (rankName.equalsIgnoreCase("tax.infrasp.")){ return Rank.INFRASPECIFICTAXON();
|
|
431
|
// old ranks
|
|
432
|
}else if (rankName.equalsIgnoreCase("proles")){ return Rank.INFRASPECIFICTAXON(); //to create the name put prol. and the infraspeciesepi to the field unnamed namephrase
|
|
433
|
}else if (rankName.equalsIgnoreCase("race")){ return Rank.INFRASPECIFICTAXON(); //to create the name put prol. and the infraspeciesepi to the field unnamed namephrase
|
|
434
|
}else if (rankName.equalsIgnoreCase("taxon")){ return Rank.INFRASPECIFICTAXON(); //to create the name put prol. and the infraspeciesepi to the field unnamed namephrase
|
|
435
|
}else if (rankName.equalsIgnoreCase("sublusus")){ return Rank.INFRASPECIFICTAXON(); //to create the name put prol. and the infraspeciesepi to the field unnamed namephrase
|
|
436
|
|
|
437
|
}else{
|
|
438
|
if (rankName == null){
|
|
439
|
rankName = "(null)";
|
|
440
|
}
|
|
441
|
throw new UnknownRankException("Unknown rank name: " + rankName);
|
|
442
|
}
|
|
443
|
}
|
|
444
|
|
|
445
|
//TODO
|
|
446
|
//dummy implementation for BerlinModelImport
|
|
447
|
@Transient
|
|
448
|
public String getAbbreviation(){
|
|
449
|
if (this.equals(Rank.SPECIES()) ){return "sp.";}
|
|
450
|
else if (this.equals(Rank.SUBSPECIES()) ){return "subsp.";}
|
|
451
|
else if (this.equals(Rank.VARIETY()) ){return "var.";}
|
|
452
|
else if (this.equals(Rank.CONVAR()) ){return "convar.";}
|
|
453
|
else if (this.equals(Rank.SUBVARIETY()) ){return "subvar.";}
|
|
454
|
else if (this.equals(Rank.FORM()) ){return "var.";}
|
|
455
|
else if (this.equals(Rank.SUBFORM()) ){return "f.";}
|
|
456
|
else if (this.equals(Rank.INFRASPECIFICTAXON()) ){return "tax.infrasp.";}
|
|
457
|
else {
|
|
458
|
logger.warn("Abbreviation for this Rank not yet implemented");
|
|
459
|
return "xxx.";
|
|
460
|
}
|
|
461
|
|
|
462
|
|
|
463
|
|
|
464
|
}
|
|
465
|
|
|
466
|
|
|
467
|
|
|
468
|
|
|
469
|
}
|