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9479da48
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Andreas Müller
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.common;
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ee91bcd9
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ben.clark
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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9479da48
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Andreas Müller
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ee91bcd9
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ben.clark
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import javax.persistence.Entity;
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import javax.persistence.FetchType;
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import javax.persistence.Inheritance;
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import javax.persistence.InheritanceType;
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0a6f2f53
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Andreas Müller
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import javax.persistence.ManyToMany;
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ee91bcd9
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ben.clark
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import javax.persistence.ManyToOne;
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import javax.persistence.OneToMany;
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b70a7f94
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Andreas Kohlbecker
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import javax.persistence.Transient;
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0a6f2f53
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Andreas Müller
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import javax.validation.constraints.NotNull;
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70440a7d
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a.babadshanjan
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import javax.xml.bind.annotation.XmlAccessType;
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import javax.xml.bind.annotation.XmlAccessorType;
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import javax.xml.bind.annotation.XmlElement;
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import javax.xml.bind.annotation.XmlElementWrapper;
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c4c118de
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a.babadshanjan
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import javax.xml.bind.annotation.XmlIDREF;
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70440a7d
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a.babadshanjan
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import javax.xml.bind.annotation.XmlRootElement;
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c4c118de
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a.babadshanjan
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import javax.xml.bind.annotation.XmlSchemaType;
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c9866164
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ben.clark
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import javax.xml.bind.annotation.XmlSeeAlso;
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import javax.xml.bind.annotation.XmlTransient;
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70440a7d
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a.babadshanjan
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import javax.xml.bind.annotation.XmlType;
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9479da48
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Andreas Müller
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ee91bcd9
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ben.clark
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import org.apache.log4j.Logger;
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import org.hibernate.annotations.Cascade;
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import org.hibernate.annotations.CascadeType;
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import org.hibernate.envers.Audited;
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import au.com.bytecode.opencsv.CSVWriter;
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c9866164
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ben.clark
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import eu.etaxonomy.cdm.model.agent.InstitutionType;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.MeasurementUnit;
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import eu.etaxonomy.cdm.model.description.StatisticalMeasure;
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import eu.etaxonomy.cdm.model.description.TextFormat;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.location.ReferenceSystem;
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ee91bcd9
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ben.clark
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import eu.etaxonomy.cdm.model.media.Media;
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e0212247
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n.hoffmann
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import eu.etaxonomy.cdm.model.media.RightsTerm;
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c9866164
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ben.clark
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;
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import eu.etaxonomy.cdm.model.occurrence.PreservationMethod;
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ee91bcd9
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ben.clark
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fbd23d1d
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Andreas Müller
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9479da48
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Andreas Müller
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/**
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10a54497
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m.geoffroy
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* walkaround for enumerations, base type according to TDWG. For linear ordering
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9479da48
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Andreas Müller
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* use partOf relation and BreadthFirst. Default iterator order should therefore
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* be BreadthFirst (not DepthFirst)
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* @author m.doering
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* @version 1.0
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* @created 08-Nov-2007 13:06:19
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*/
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70440a7d
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a.babadshanjan
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@XmlAccessorType(XmlAccessType.FIELD)
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@XmlType(name = "DefinedTermBase", propOrder = {
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"media",
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"vocabulary"
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})
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@XmlRootElement(name = "DefinedTermBase")
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c9866164
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ben.clark
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@XmlSeeAlso({
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AnnotationType.class,
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DerivationEventType.class,
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ExtensionType.class,
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Feature.class,
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InstitutionType.class,
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Language.class,
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MarkerType.class,
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MeasurementUnit.class,
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NamedAreaType.class,
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NomenclaturalCode.class,
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PreservationMethod.class,
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ReferenceSystem.class,
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e0212247
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n.hoffmann
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RightsTerm.class,
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c9866164
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ben.clark
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StatisticalMeasure.class,
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828f8b96
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a.babadshanjan
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TextFormat.class
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c9866164
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ben.clark
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})
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9479da48
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Andreas Müller
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@Entity
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ee91bcd9
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ben.clark
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@Audited
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9479da48
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Andreas Müller
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@Inheritance(strategy=InheritanceType.SINGLE_TABLE)
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0d656d7a
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Andreas Müller
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public abstract class DefinedTermBase<T extends DefinedTermBase> extends TermBase implements ILoadableTerm<T>, IDefinedTerm<T> {
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0d575644
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Andreas Müller
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private static final long serialVersionUID = 2931811562248571531L;
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private static final Logger logger = Logger.getLogger(DefinedTermBase.class);
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0d656d7a
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Andreas Müller
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c9866164
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ben.clark
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// @XmlElement(name = "KindOf")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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@XmlTransient
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ben.clark
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@ManyToOne(fetch = FetchType.LAZY, targetEntity = DefinedTermBase.class)
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@Cascade(CascadeType.SAVE_UPDATE)
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b9adfb4e
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ben.clark
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private T kindOf;
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/**
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* FIXME - Hibernate retuns this as a collection of CGLibProxy$$DefinedTermBase objects
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* which can't be cast to instances of T - can we explicitly initialize these terms using
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* Hibernate.initialize(), does this imply a distinct load, and find methods in the dao?
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*/
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c9866164
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ben.clark
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// @XmlElementWrapper(name = "Generalizations")
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// @XmlElement(name = "GeneralizationOf")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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@XmlTransient
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ee91bcd9
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ben.clark
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@OneToMany(fetch=FetchType.LAZY, mappedBy = "kindOf", targetEntity = DefinedTermBase.class)
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@Cascade({CascadeType.SAVE_UPDATE})
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b9adfb4e
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ben.clark
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private Set<T> generalizationOf = new HashSet<T>();
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70440a7d
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a.babadshanjan
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c9866164
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ben.clark
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// @XmlElement(name = "PartOf")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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@XmlTransient
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ee91bcd9
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ben.clark
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@ManyToOne(fetch = FetchType.LAZY, targetEntity = DefinedTermBase.class)
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@Cascade(CascadeType.SAVE_UPDATE)
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72f6d412
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Andreas Kohlbecker
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protected T partOf;
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70440a7d
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a.babadshanjan
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b9adfb4e
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ben.clark
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/**
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* FIXME - Hibernate retuns this as a collection of CGLibProxy$$DefinedTermBase objects
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* which can't be cast to instances of T - can we explicitly initialize these terms using
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* Hibernate.initialize(), does this imply a distinct load, and find methods in the dao?
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*/
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c9866164
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ben.clark
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// @XmlElementWrapper(name = "Includes")
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// @XmlElement(name = "Include")
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// @XmlIDREF
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// @XmlSchemaType(name = "IDREF")
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@XmlTransient
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ee91bcd9
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ben.clark
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@OneToMany(fetch=FetchType.LAZY, mappedBy = "partOf", targetEntity = DefinedTermBase.class)
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@Cascade({CascadeType.SAVE_UPDATE})
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private Set<T> includes = new HashSet<T>();
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70440a7d
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a.babadshanjan
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@XmlElementWrapper(name = "Media")
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@XmlElement(name = "Medium")
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0ae18eec
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a.babadshanjan
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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0a6f2f53
|
Andreas Müller
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@ManyToMany(fetch = FetchType.LAZY)
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ee91bcd9
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ben.clark
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@Cascade({CascadeType.SAVE_UPDATE})
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9479da48
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Andreas Müller
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private Set<Media> media = new HashSet<Media>();
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70440a7d
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a.babadshanjan
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3e57e2a8
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a.babadshanjan
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@XmlElement(name = "TermVocabulary")
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c4c118de
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a.babadshanjan
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@XmlIDREF
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@XmlSchemaType(name = "IDREF")
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ee91bcd9
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ben.clark
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@ManyToOne(fetch=FetchType.LAZY)
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@Cascade(CascadeType.SAVE_UPDATE)
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f6765014
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ben.clark
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protected TermVocabulary<T> vocabulary;
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9479da48
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Andreas Müller
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8cc82a87
|
Andreas Müller
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//***************************** CONSTRUCTOR *******************************************/
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9479da48
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Andreas Müller
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public DefinedTermBase() {
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super();
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}
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41b23b4e
|
Andreas Müller
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public DefinedTermBase(String term, String label, String labelAbbrev) {
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super(term, label, labelAbbrev);
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9479da48
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Andreas Müller
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}
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8cc82a87
|
Andreas Müller
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//******************************* METHODS ******************************************************/
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public abstract void resetTerms();
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9479da48
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Andreas Müller
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8cc82a87
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Andreas Müller
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protected abstract void setDefaultTerms(TermVocabulary<T> termVocabulary);
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9479da48
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Andreas Müller
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/* (non-Javadoc)
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8bc5f53a
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Andreas Müller
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* @see eu.etaxonomy.cdm.model.common.ILoadableTerm#readCsvLine(java.util.List)
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9479da48
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Andreas Müller
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*/
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f6765014
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ben.clark
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public T readCsvLine(Class<T> termClass, List<String> csvLine, Map<UUID,DefinedTermBase> terms) {
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try {
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T newInstance = termClass.newInstance();
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9cc4226b
|
Katja Luther
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return readCsvLine(newInstance, csvLine, Language.CSV_LANGUAGE());
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f6765014
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ben.clark
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} catch (Exception e) {
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logger.error(e);
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for(StackTraceElement ste : e.getStackTrace()) {
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logger.error(ste);
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}
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}
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return null;
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9479da48
|
Andreas Müller
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}
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| 186 |
1016f650
|
Andreas Müller
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| 187 |
f6765014
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ben.clark
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protected static <TERM extends DefinedTermBase> TERM readCsvLine(TERM newInstance, List<String> csvLine, Language lang) {
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newInstance.setUuid(UUID.fromString(csvLine.get(0)));
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newInstance.setUri(csvLine.get(1));
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String label = csvLine.get(2).trim();
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String text = csvLine.get(3);
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String abbreviatedLabel = csvLine.get(4);
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newInstance.addRepresentation(Representation.NewInstance(text, label, abbreviatedLabel, lang) );
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return newInstance;
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| 195 |
9479da48
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Andreas Müller
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}
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/* (non-Javadoc)
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8bc5f53a
|
Andreas Müller
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* @see eu.etaxonomy.cdm.model.common.ILoadableTerm#writeCsvLine(au.com.bytecode.opencsv.CSVWriter)
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9479da48
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Andreas Müller
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*/
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f6765014
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ben.clark
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public void writeCsvLine(CSVWriter writer, T term) {
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9479da48
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Andreas Müller
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String [] line = new String[4];
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f6765014
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ben.clark
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line[0] = term.getUuid().toString();
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line[1] = term.getUri();
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line[2] = term.getLabel();
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line[3] = term.getDescription();
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| 206 |
9479da48
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Andreas Müller
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writer.writeNext(line);
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}
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| 209 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getByUuid(java.util.UUID)
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*/
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| 212 |
b70a7f94
|
Andreas Kohlbecker
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@Transient
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f6765014
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ben.clark
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public T getByUuid(UUID uuid){
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return this.vocabulary.findTermByUuid(uuid);
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}
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| 217 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getKindOf()
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*/
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| 220 |
b9adfb4e
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ben.clark
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public T getKindOf(){
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| 221 |
17a0cbe8
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ben.clark
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return (T)DefinedTermBase.deproxy(this.kindOf, this.getClass());
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| 222 |
9479da48
|
Andreas Müller
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}
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| 223 |
2e5415fa
|
Andreas Müller
|
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| 224 |
b9adfb4e
|
ben.clark
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public void setKindOf(T kindOf){
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| 225 |
9479da48
|
Andreas Müller
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this.kindOf = kindOf;
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}
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| 228 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getGeneralizationOf()
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*/
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| 231 |
b9adfb4e
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ben.clark
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public Set<T> getGeneralizationOf(){
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| 232 |
9479da48
|
Andreas Müller
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return this.generalizationOf;
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}
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| 234 |
7ef24b51
|
ben.clark
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| 235 |
c9866164
|
ben.clark
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protected void setGeneralizationOf(Set<T> value) {
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this.generalizationOf = value;
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}
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| 239 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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| 240 |
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#addGeneralizationOf(T)
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*/
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| 242 |
b9adfb4e
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ben.clark
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public void addGeneralizationOf(T generalization) {
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| 243 |
7ef24b51
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ben.clark
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generalization.setKindOf(this);
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this.generalizationOf.add(generalization);
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}
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| 247 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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| 248 |
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#removeGeneralization(T)
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*/
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| 250 |
b9adfb4e
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ben.clark
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public void removeGeneralization(T generalization) {
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| 251 |
7ef24b51
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ben.clark
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if(generalizationOf.contains(generalization)){
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generalization.setKindOf(null);
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this.generalizationOf.remove(generalization);
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}
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| 255 |
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}
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| 256 |
9479da48
|
Andreas Müller
|
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| 257 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getPartOf()
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*/
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| 260 |
b9adfb4e
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ben.clark
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public T getPartOf(){
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| 261 |
17a0cbe8
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ben.clark
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return (T)DefinedTermBase.deproxy(this.partOf, this.getClass());
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| 262 |
9479da48
|
Andreas Müller
|
}
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| 263 |
ee91bcd9
|
ben.clark
|
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| 264 |
0d656d7a
|
Andreas Müller
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/* (non-Javadoc)
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| 265 |
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#setPartOf(T)
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*/
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public void setPartOf(T partOf){
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this.partOf = partOf;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getIncludes()
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*/
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public Set<T> getIncludes(){
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return this.includes;
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}
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protected void setIncludes(Set<T> includes) {
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this.includes = includes;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#addIncludes(T)
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*/
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public void addIncludes(T includes) {
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includes.setPartOf(this);
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this.includes.add(includes);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#removeIncludes(T)
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*/
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public void removeIncludes(T includes) {
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if(this.includes.contains(includes)) {
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includes.setPartOf(null);
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this.includes.remove(includes);
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#getMedia()
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*/
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public Set<Media> getMedia(){
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return this.media;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.model.common.IDefinedTerm#addMedia(eu.etaxonomy.cdm.model.media.Media)
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| 308 |
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*/
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public void addMedia(Media media) {
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this.media.add(media);
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}
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public void removeMedia(Media media) {
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this.media.remove(media);
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}
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| 315 |
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/**
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| 317 |
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* @return
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| 318 |
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*/
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| 319 |
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public TermVocabulary<T> getVocabulary() {
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return this.vocabulary;
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| 321 |
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}
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//for bedirectional use only, use vocabulary.addTerm instead
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/**
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| 325 |
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* @param newVocabulary
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| 326 |
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*/
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| 327 |
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protected void setVocabulary(TermVocabulary<T> newVocabulary) {
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| 328 |
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this.vocabulary = newVocabulary;
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| 329 |
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}
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| 330 |
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}
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