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ec34ece7
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Andreas Müller
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/**
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* Copyright (C) 2009 EDIT
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531fc7bc
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Andreas Müller
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* European Distributed Institute of Taxonomy
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ec34ece7
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Andreas Müller
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* http://www.e-taxonomy.eu
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531fc7bc
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Andreas Müller
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*
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ec34ece7
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Andreas Müller
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.dwca.in;
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import java.util.ArrayList;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import org.apache.log4j.Logger;
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1baa10df
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Andreas Müller
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import eu.etaxonomy.cdm.io.stream.IPartitionableConverter;
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import eu.etaxonomy.cdm.io.stream.IReader;
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import eu.etaxonomy.cdm.io.stream.ListReader;
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import eu.etaxonomy.cdm.io.stream.MappedCdmBase;
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import eu.etaxonomy.cdm.io.stream.PartitionableConverterBase;
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202541e6
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Alexander Oppermann
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import eu.etaxonomy.cdm.io.stream.StreamItem;
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Andreas Müller
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import eu.etaxonomy.cdm.io.stream.terms.TermUri;
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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/**
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* @author a.mueller
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Andreas Müller
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* @since 22.11.2011
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Andreas Müller
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*
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*/
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Andreas Müller
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public class GbifImageCsv2CdmConverter extends PartitionableConverterBase<DwcaDataImportConfiguratorBase, DwcaDataImportStateBase<DwcaDataImportConfiguratorBase>>
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202541e6
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Alexander Oppermann
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implements IPartitionableConverter<StreamItem, IReader<CdmBase>, String>{
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Andreas Müller
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Andreas Müller
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(GbifImageCsv2CdmConverter.class);
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private static final String CORE_ID = "coreId";
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531fc7bc
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Andreas Müller
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ec34ece7
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Andreas Müller
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/**
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* @param state
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*/
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202541e6
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Alexander Oppermann
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public GbifImageCsv2CdmConverter(DwcaDataImportStateBase state) {
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ec34ece7
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Andreas Müller
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super(state);
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}
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@Override
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Andreas Müller
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public IReader<MappedCdmBase<? extends CdmBase>> map(StreamItem item ){
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List<MappedCdmBase<? extends CdmBase>> resultList = new ArrayList<>();
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531fc7bc
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Andreas Müller
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ec34ece7
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Andreas Müller
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Map<String, String> csv = item.map;
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Reference sourceReference = state.getTransactionalSourceReference();
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ec34ece7
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Andreas Müller
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String sourceReferecenDetail = null;
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ec34ece7
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String id = getSourceId(item);
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Taxon taxon = getTaxonBase(id, item, Taxon.class, state);
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if (taxon != null){
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Andreas Müller
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ec34ece7
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Andreas Müller
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// xxx;
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}else{
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String message = "Can't retrieve taxon from database for id '%s'";
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fireWarningEvent(String.format(message, id), item, 12);
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}
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531fc7bc
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Andreas Müller
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ec34ece7
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Andreas Müller
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//return
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return new ListReader<>(resultList);
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ec34ece7
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Andreas Müller
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}
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ec34ece7
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Andreas Müller
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@Override
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202541e6
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Alexander Oppermann
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public String getSourceId(StreamItem item) {
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ec34ece7
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Andreas Müller
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String id = item.get(CORE_ID);
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return id;
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}
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//********************** PARTITIONABLE **************************************/
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@Override
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202541e6
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Alexander Oppermann
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protected void makeForeignKeysForItem(StreamItem item, Map<String, Set<String>> fkMap) {
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ec34ece7
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Andreas Müller
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String value;
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String key;
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//taxon
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if ( hasValue(value = item.get(CORE_ID))){
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key = TermUri.DWC_TAXON.toString();
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Set<String> keySet = getKeySet(key, fkMap);
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keySet.add(value);
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}
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ec34ece7
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Andreas Müller
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}
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@Override
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public Set<String> requiredSourceNamespaces() {
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1eaef993
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Andreas Müller
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Set<String> result = new HashSet<>();
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ec34ece7
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Andreas Müller
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result.add(TermUri.DWC_TAXON.toString());
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return result;
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}
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531fc7bc
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Andreas Müller
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ec34ece7
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Andreas Müller
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//******************* TO STRING ******************************************/
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531fc7bc
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Andreas Müller
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ec34ece7
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Andreas Müller
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@Override
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public String toString(){
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return this.getClass().getName();
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}
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}
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