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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.api.service;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.beans.factory.annotation.Qualifier;
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import org.springframework.stereotype.Service;
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import org.springframework.transaction.annotation.Transactional;
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import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
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import eu.etaxonomy.cdm.api.service.config.INameServiceConfigurator;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.api.service.pager.impl.DefaultPagerImpl;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
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import eu.etaxonomy.cdm.model.common.ReferencedEntityBase;
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import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.name.BotanicalName;
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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import eu.etaxonomy.cdm.model.name.HybridRelationship;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationship;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.NonViralName;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.TypeDesignationBase;
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import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase;
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import eu.etaxonomy.cdm.persistence.dao.common.IOrderedTermVocabularyDao;
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import eu.etaxonomy.cdm.persistence.dao.common.IReferencedEntityDao;
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import eu.etaxonomy.cdm.persistence.dao.common.ITermVocabularyDao;
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import eu.etaxonomy.cdm.persistence.dao.name.IHomotypicalGroupDao;
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import eu.etaxonomy.cdm.persistence.dao.name.INomenclaturalStatusDao;
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import eu.etaxonomy.cdm.persistence.dao.name.ITaxonNameDao;
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import eu.etaxonomy.cdm.persistence.dao.name.ITypeDesignationDao;
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@Service
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@Transactional(readOnly = true)
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public class NameServiceImpl extends IdentifiableServiceBase<TaxonNameBase,ITaxonNameDao> implements INameService {
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static private final Logger logger = Logger.getLogger(NameServiceImpl.class);
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@Autowired
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protected ITermVocabularyDao vocabularyDao;
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@Autowired
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protected IOrderedTermVocabularyDao orderedVocabularyDao;
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@Autowired
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@Qualifier("refEntDao")
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protected IReferencedEntityDao<ReferencedEntityBase> referencedEntityDao;
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@Autowired
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private INomenclaturalStatusDao nomStatusDao;
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@Autowired
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private ITypeDesignationDao typeDesignationDao;
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@Autowired
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private IHomotypicalGroupDao homotypicalGroupDao;
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/**
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* Constructor
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*/
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public NameServiceImpl(){
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if (logger.isDebugEnabled()) { logger.debug("Load NameService Bean"); }
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}
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//********************* METHODS ****************************************************************//
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public List getNamesByName(String name){
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return super.findCdmObjectsByTitle(name);
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}
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public List getNamesByName(String name, CdmBase sessionObject){
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return super.findCdmObjectsByTitle(name, sessionObject);
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}
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public List findNamesByTitle(String title){
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return super.findCdmObjectsByTitle(title);
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}
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public List findNamesByTitle(String title, CdmBase sessionObject){
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return super.findCdmObjectsByTitle(title, sessionObject);
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}
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public List<TaxonNameBase> findByTitle(IIdentifiableEntityServiceConfigurator config) {
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return super.findByTitle(config);
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}
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public TaxonNameBase<?,?> getTaxonNameByUuid(UUID uuid) {
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return super.getCdmObjectByUuid(uuid);
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}
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@Transactional(readOnly = false)
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public UUID saveTaxonName(TaxonNameBase taxonName) {
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return super.saveCdmObject(taxonName);
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}
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@Transactional(readOnly = false)
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public Map<UUID, TaxonNameBase> saveTaxonNameAll(Collection<? extends TaxonNameBase> taxonNameCollection){
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return saveCdmObjectAll(taxonNameCollection);
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}
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@Transactional(readOnly = false)
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public Map<UUID, HomotypicalGroup> saveAllHomotypicalGroups(Collection<HomotypicalGroup> homotypicalGroups){
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return homotypicalGroupDao.saveAll(homotypicalGroups);
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}
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@Transactional(readOnly = false)
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public Map<UUID, TypeDesignationBase> saveTypeDesignationAll(Collection<TypeDesignationBase> typeDesignationCollection){
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return typeDesignationDao.saveAll(typeDesignationCollection);
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}
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@Transactional(readOnly = false)
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public Map<UUID, ReferencedEntityBase> saveReferencedEntitiesAll(Collection<ReferencedEntityBase> referencedEntityCollection){
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return referencedEntityDao.saveAll(referencedEntityCollection);
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}
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@Transactional(readOnly = false)
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public UUID removeTaxonName(TaxonNameBase taxonName) {
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return super.removeCdmObject(taxonName);
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}
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public List<TaxonNameBase> getAllNames(int limit, int start){
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return dao.list(limit, start);
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}
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public List<NomenclaturalStatus> getAllNomenclaturalStatus(int limit, int start){
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return nomStatusDao.list(limit, start);
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}
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public List<TypeDesignationBase> getAllTypeDesignations(int limit, int start){
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return typeDesignationDao.getAllTypeDesignations(limit, start);
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}
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public List<HomotypicalGroup> getAllHomotypicalGroups(int limit, int start){
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return homotypicalGroupDao.list(limit, start);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.api.service.INameService#getRankVocabulary()
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*/
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public OrderedTermVocabulary<Rank> getRankVocabulary() {
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String uuidString = "ef0d1ce1-26e3-4e83-b47b-ca74eed40b1b";
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UUID uuid = UUID.fromString(uuidString);
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OrderedTermVocabulary<Rank> rankVocabulary =
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(OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);
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return rankVocabulary;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.api.service.INameService#getNameRelationshipTypeVocabulary()
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*/
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public TermVocabulary<NameRelationshipType> getNameRelationshipTypeVocabulary() {
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String uuidString = "6878cb82-c1a4-4613-b012-7e73b413c8cd";
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UUID uuid = UUID.fromString(uuidString);
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TermVocabulary<NameRelationshipType> nameRelTypeVocabulary =
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(TermVocabulary)vocabularyDao.findByUuid(uuid);
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return nameRelTypeVocabulary;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.api.service.INameService#getStatusTypeVocabulary()
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*/
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public TermVocabulary<NomenclaturalStatusType> getStatusTypeVocabulary() {
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String uuidString = "bb28cdca-2f8a-4f11-9c21-517e9ae87f1f";
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UUID uuid = UUID.fromString(uuidString);
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TermVocabulary<NomenclaturalStatusType> nomStatusTypeVocabulary =
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(TermVocabulary)vocabularyDao.findByUuid(uuid);
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return nomStatusTypeVocabulary;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()
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*/
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public TermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationStatusVocabulary() {
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String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";
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UUID uuid = UUID.fromString(uuidString);
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TermVocabulary<SpecimenTypeDesignationStatus> typeDesigStatusVocabulary =
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(TermVocabulary)vocabularyDao.findByUuid(uuid);
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return typeDesigStatusVocabulary;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.api.service.INameService#getTypeDesignationStatusVocabulary()
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*/
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public OrderedTermVocabulary<SpecimenTypeDesignationStatus> getSpecimenTypeDesignationVocabulary() {
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String uuidString = "ab177bd7-d3c8-4e58-a388-226fff6ba3c2";
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UUID uuid = UUID.fromString(uuidString);
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OrderedTermVocabulary<SpecimenTypeDesignationStatus> typeDesignationVocabulary =
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(OrderedTermVocabulary)orderedVocabularyDao.findByUuid(uuid);
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return typeDesignationVocabulary;
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}
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public void generateTitleCache() {
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logger.warn("Not yet implemented");
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// TODO Auto-generated method stub
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}
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@Autowired
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protected void setDao(ITaxonNameDao dao) {
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this.dao = dao;
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}
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public Pager<HybridRelationship> getHybridNames(BotanicalName name, HybridRelationshipType type, Integer pageSize, Integer pageNumber) {
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Integer numberOfResults = dao.countHybridNames(name, type);
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List<HybridRelationship> results = new ArrayList<HybridRelationship>();
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if(numberOfResults > 0) { // no point checking again
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results = dao.getHybridNames(name, type, pageSize, pageNumber);
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}
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return new DefaultPagerImpl<HybridRelationship>(pageNumber, numberOfResults, pageSize, results);
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}
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public Pager<NameRelationship> getRelatedNames(TaxonNameBase name,NameRelationshipType type, Integer pageSize, Integer pageNumber) {
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Integer numberOfResults = dao.countRelatedNames(name, type);
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List<NameRelationship> results = new ArrayList<NameRelationship>();
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if(numberOfResults > 0) { // no point checking again
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results = dao.getRelatedNames(name, type, pageSize, pageNumber);
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}
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return new DefaultPagerImpl<NameRelationship>(pageNumber, numberOfResults, pageSize, results);
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}
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public Pager<TypeDesignationBase> getTypeDesignations(TaxonNameBase name, SpecimenTypeDesignationStatus status, Integer pageSize, Integer pageNumber) {
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Integer numberOfResults = dao.countTypeDesignations(name, status);
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List<TypeDesignationBase> results = new ArrayList<TypeDesignationBase>();
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if(numberOfResults > 0) { // no point checking again
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results = dao.getTypeDesignations(name, status, pageSize, pageNumber);
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}
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return new DefaultPagerImpl<TypeDesignationBase>(pageNumber, numberOfResults, pageSize, results);
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}
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public Pager<TaxonNameBase> searchNames(String uninomial,String infraGenericEpithet, String specificEpithet, String infraspecificEpithet, Rank rank, Integer pageSize, Integer pageNumber) {
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Integer numberOfResults = dao.countNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank);
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List<TaxonNameBase> results = new ArrayList<TaxonNameBase>();
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if(numberOfResults > 0) { // no point checking again
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results = dao.searchNames(uninomial, infraGenericEpithet, specificEpithet, infraspecificEpithet, rank, pageSize, pageNumber);
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}
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return new DefaultPagerImpl<TaxonNameBase>(pageNumber, numberOfResults, pageSize, results);
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}
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}
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