|
1
|
// $Id$
|
|
2
|
/**
|
|
3
|
* Copyright (C) 2007 EDIT
|
|
4
|
* European Distributed Institute of Taxonomy
|
|
5
|
* http://www.e-taxonomy.eu
|
|
6
|
*
|
|
7
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
8
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
9
|
*/
|
|
10
|
|
|
11
|
package eu.etaxonomy.cdm.model.name;
|
|
12
|
|
|
13
|
import java.util.HashMap;
|
|
14
|
import java.util.Map;
|
|
15
|
import java.util.UUID;
|
|
16
|
|
|
17
|
import javax.persistence.Entity;
|
|
18
|
import javax.persistence.Transient;
|
|
19
|
import javax.xml.bind.annotation.XmlAccessType;
|
|
20
|
import javax.xml.bind.annotation.XmlAccessorType;
|
|
21
|
import javax.xml.bind.annotation.XmlType;
|
|
22
|
|
|
23
|
import org.apache.log4j.Logger;
|
|
24
|
import org.hibernate.envers.Audited;
|
|
25
|
import org.hibernate.search.annotations.Indexed;
|
|
26
|
|
|
27
|
import eu.etaxonomy.cdm.model.common.TermType;
|
|
28
|
import eu.etaxonomy.cdm.model.common.TermVocabulary;
|
|
29
|
|
|
30
|
/**
|
|
31
|
* The terms in this class define the status of a {@link NameTypeDesignation name type designation}.
|
|
32
|
*
|
|
33
|
* @author a.babadshanjan
|
|
34
|
* @created 20.03.2009
|
|
35
|
*/
|
|
36
|
@XmlAccessorType(XmlAccessType.FIELD)
|
|
37
|
@XmlType(name = "NameTypeDesignationStatus")
|
|
38
|
@Entity
|
|
39
|
@Indexed(index = "eu.etaxonomy.cdm.model.common.DefinedTermBase")
|
|
40
|
@Audited
|
|
41
|
public class NameTypeDesignationStatus extends TypeDesignationStatusBase<NameTypeDesignationStatus> {
|
|
42
|
private static final long serialVersionUID = -8801837496688711907L;
|
|
43
|
@SuppressWarnings("unused")
|
|
44
|
private static final Logger logger = Logger.getLogger(NameTypeDesignationStatus.class);
|
|
45
|
|
|
46
|
private static final UUID uuidAutomatic = UUID.fromString("e89d8b21-615a-4602-913f-1625bf39a69f");
|
|
47
|
private static final UUID uuidMonotypy = UUID.fromString("3fc639b2-9a64-45f8-9a81-657a4043ad74");
|
|
48
|
private static final UUID uuidNotApplicable = UUID.fromString("91a9d6a9-7754-41cd-9f7e-be136f599f7e");
|
|
49
|
private static final UUID uuidOriginalDesignation = UUID.fromString("40032a44-973b-4a64-b25e-76f86c3a753c");
|
|
50
|
private static final UUID uuidPresentDesignation = UUID.fromString("e5f38f5d-995d-4470-a036-1a9792a543fc");
|
|
51
|
private static final UUID uuidSubsequentMonotypy = UUID.fromString("2b5806d8-31b0-406e-a32a-4adac0c89ae4");
|
|
52
|
private static final UUID uuidSubsequentDesignation = UUID.fromString("3e449e7d-a03c-4431-a7d3-aa258406f6b2");
|
|
53
|
private static final UUID uuidTautonymy = UUID.fromString("84521f09-3e10-43f5-aa6f-2173a55a6790");
|
|
54
|
private static final UUID uuidLectotype = UUID.fromString("4177c938-b741-40e1-95e5-4c53bd1ed87d");
|
|
55
|
|
|
56
|
/**
|
|
57
|
* Factory method: creates an additional type designation status instance
|
|
58
|
* with a description (in the {@link eu.etaxonomy.cdm.model.common.Language#DEFAULT() default language}), a label
|
|
59
|
* and a label abbreviation.
|
|
60
|
*
|
|
61
|
* @param term the string (in the default language) describing the
|
|
62
|
* new name type designation status to be created
|
|
63
|
* @param label the string identifying the new name type designation
|
|
64
|
* status to be created
|
|
65
|
* @param labelAbbrev the string identifying (in abbreviated form) the
|
|
66
|
* new name type designation status to be created
|
|
67
|
*/
|
|
68
|
public static NameTypeDesignationStatus NewInstance(String term, String label, String labelAbbrev){
|
|
69
|
return new NameTypeDesignationStatus(term, label, labelAbbrev);
|
|
70
|
}
|
|
71
|
|
|
72
|
protected static Map<UUID, NameTypeDesignationStatus> termMap = null;
|
|
73
|
|
|
74
|
protected static NameTypeDesignationStatus findTermByUuid(UUID uuid){
|
|
75
|
if (termMap == null || termMap.isEmpty()){
|
|
76
|
return getTermByClassAndUUID(NameTypeDesignationStatus.class, uuid);
|
|
77
|
} else {
|
|
78
|
return termMap.get(uuid);
|
|
79
|
}
|
|
80
|
}
|
|
81
|
|
|
82
|
//********************************** Constructor *********************************/
|
|
83
|
|
|
84
|
//for hibernate use only
|
|
85
|
@Deprecated
|
|
86
|
protected NameTypeDesignationStatus() {
|
|
87
|
super (TermType.NameTypeDesignationStatus);
|
|
88
|
}
|
|
89
|
|
|
90
|
protected NameTypeDesignationStatus(String term, String label, String labelAbbrev) {
|
|
91
|
super(TermType.NameTypeDesignationStatus, term, label, labelAbbrev);
|
|
92
|
}
|
|
93
|
|
|
94
|
//************************** METHODS ********************************
|
|
95
|
|
|
96
|
/* (non-Javadoc)
|
|
97
|
* @see eu.etaxonomy.cdm.model.common.DefinedTermBase#resetTerms()
|
|
98
|
*/
|
|
99
|
@Override
|
|
100
|
public void resetTerms(){
|
|
101
|
termMap = null;
|
|
102
|
}
|
|
103
|
|
|
104
|
|
|
105
|
/**
|
|
106
|
* Returns the "automatic" name type designation status.</BR>
|
|
107
|
* If a new name has to be established for a genus name this new name automatically gets
|
|
108
|
* the same type species as the old name.
|
|
109
|
* ICZN 67.8
|
|
110
|
*/
|
|
111
|
public static final NameTypeDesignationStatus AUTOMATIC(){
|
|
112
|
return findTermByUuid(uuidAutomatic);
|
|
113
|
}
|
|
114
|
|
|
115
|
/**
|
|
116
|
* Returns the "monotypy" name type designation status.</BR>
|
|
117
|
* Only one species was included in original genus description.
|
|
118
|
* ICZN 68.3.
|
|
119
|
* No {@linkplain TypeDesignationBase#getCitation() citation} is needed
|
|
120
|
* for a monotypy as the type species is decided within the original paper.
|
|
121
|
*/
|
|
122
|
public static final NameTypeDesignationStatus MONOTYPY(){
|
|
123
|
return findTermByUuid(uuidMonotypy);
|
|
124
|
}
|
|
125
|
|
|
126
|
/**
|
|
127
|
* Returns the "not applicable" name type designation status.</BR>
|
|
128
|
* Used in the BDWD (BioSystematic Database of World Diptera) for
|
|
129
|
* nomina nuda, emendations and misspellings.
|
|
130
|
*/
|
|
131
|
public static final NameTypeDesignationStatus NOT_APPLICABLE(){
|
|
132
|
return findTermByUuid(uuidNotApplicable);
|
|
133
|
}
|
|
134
|
|
|
135
|
/**
|
|
136
|
* Returns the "original designation" name type designation status.</BR>
|
|
137
|
* The type species is designated in the original genus description
|
|
138
|
* (this includes indication in the species name typicus).
|
|
139
|
* ICZN 68.2<Br>
|
|
140
|
* No {@linkplain TypeDesignationBase#getCitation() citation} is needed
|
|
141
|
* for an original designation as the type species is decided within the original paper.
|
|
142
|
*/
|
|
143
|
public static final NameTypeDesignationStatus ORIGINAL_DESIGNATION(){
|
|
144
|
return findTermByUuid(uuidOriginalDesignation);
|
|
145
|
}
|
|
146
|
|
|
147
|
/**
|
|
148
|
* Returns the "present designation" name type designation status.</BR>
|
|
149
|
* The type species is designated now (maybe possible in future,
|
|
150
|
* after ICZN has changed and online publications are available).
|
|
151
|
*/
|
|
152
|
public static final NameTypeDesignationStatus PRESENT_DESIGNATION(){
|
|
153
|
return findTermByUuid(uuidPresentDesignation);
|
|
154
|
}
|
|
155
|
|
|
156
|
/**
|
|
157
|
* Returns the "subsequent monotypy" name type designation status.</BR>
|
|
158
|
* If only one nominal species was first subsequently included
|
|
159
|
* in a nominal genus or subgenus established without included species,
|
|
160
|
* that nominal species is automatically fixed as the type species,
|
|
161
|
* by subsequent monotypy.
|
|
162
|
* ICZN 69.3
|
|
163
|
*/
|
|
164
|
public static final NameTypeDesignationStatus SUBSEQUENT_MONOTYPY(){
|
|
165
|
return findTermByUuid(uuidSubsequentMonotypy);
|
|
166
|
}
|
|
167
|
|
|
168
|
/**
|
|
169
|
* Returns the "subsequent designation" name type designation status.</BR>
|
|
170
|
* Several species were included in the original genus description.
|
|
171
|
* One of these has been designated as type species in a later publication.
|
|
172
|
*
|
|
173
|
* ICZN 69.1
|
|
174
|
*/
|
|
175
|
public static final NameTypeDesignationStatus SUBSEQUENT_DESIGNATION(){
|
|
176
|
return findTermByUuid(uuidSubsequentDesignation);
|
|
177
|
}
|
|
178
|
|
|
179
|
|
|
180
|
/**
|
|
181
|
* Returns the lectotype name type designation status.</BR>
|
|
182
|
* This may be the same as a {@link SUBSEQUENT_DESIGNATION()} but used in botany.
|
|
183
|
* Maybe these 2 status will be merged in future.
|
|
184
|
*/
|
|
185
|
public static final NameTypeDesignationStatus LECTOTYPE(){
|
|
186
|
return findTermByUuid(uuidLectotype);
|
|
187
|
}
|
|
188
|
|
|
189
|
/**
|
|
190
|
* Returns the "tautonomy" name type designation status.</BR>
|
|
191
|
* The genus name is the same as the species name of one of the included species.
|
|
192
|
* ICZN 68.4, 68.5
|
|
193
|
*/
|
|
194
|
public static final NameTypeDesignationStatus TAUTONYMY(){
|
|
195
|
return findTermByUuid(uuidTautonymy);
|
|
196
|
}
|
|
197
|
|
|
198
|
|
|
199
|
@Override
|
|
200
|
protected void setDefaultTerms(TermVocabulary<NameTypeDesignationStatus> termVocabulary) {
|
|
201
|
termMap = new HashMap<UUID, NameTypeDesignationStatus>();
|
|
202
|
for (NameTypeDesignationStatus term : termVocabulary.getTerms()){
|
|
203
|
termMap.put(term.getUuid(), term);
|
|
204
|
}
|
|
205
|
}
|
|
206
|
|
|
207
|
/**
|
|
208
|
* Returns the boolean value indicating whether <i>this</i> type designation
|
|
209
|
* status is itself "lectotype" or a kind of "lectotype" (true) or not
|
|
210
|
* (false). Returns false if <i>this</i> type designation status is null.<BR>
|
|
211
|
* A lectotype is a {@link eu.etaxonomy.cdm.model.occurrence.DerivedUnit specimen or illustration} designated as the
|
|
212
|
* nomenclatural type, when no holotype was indicated at the time of
|
|
213
|
* publication of the "type-bringing" {@link TaxonNameBase taxon name}, when the
|
|
214
|
* holotype is found to be assigned to taxon names belonging to more than
|
|
215
|
* one {@link HomotypicalGroup homotypical group}, or as long as it is missing.
|
|
216
|
*
|
|
217
|
* @see #LECTOTYPE()
|
|
218
|
* @see #HOLOTYPE()
|
|
219
|
* @see eu.etaxonomy.cdm.model.common.DefinedTermBase#getKindOf()
|
|
220
|
*/
|
|
221
|
@Transient
|
|
222
|
public boolean isLectotype(){
|
|
223
|
if (
|
|
224
|
this.equals(LECTOTYPE()) ||
|
|
225
|
this.equals(SUBSEQUENT_DESIGNATION()) ||
|
|
226
|
this.equals(PRESENT_DESIGNATION() )
|
|
227
|
){
|
|
228
|
return true;
|
|
229
|
}else{
|
|
230
|
return false;
|
|
231
|
}
|
|
232
|
}
|
|
233
|
}
|