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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.strategy.cache.occurrence;
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import java.util.UUID;
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import org.apache.logging.log4j.LogManager;import org.apache.logging.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.molecular.DnaSample;
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import eu.etaxonomy.cdm.model.molecular.Sequence;
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import eu.etaxonomy.cdm.model.term.DefinedTerm;
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/**
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* A default cache strategy for {@link DnaSample}.
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*
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* TODO This is a <b>preliminary</b> implementation to have at least one default cache strategy.
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* It will need improvement later on.
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*
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* #5575
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*
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* Also see DerivedUnitFacadeCacheStrategy in Service Layer.
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*
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* @author a.mueller
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* @since 09.01.2021
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*/
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public class DnaSampleDefaultCacheStrategy
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extends OccurrenceCacheStrategyBase<DnaSample>{
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private static final long serialVersionUID = -7166834437359037691L;
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@SuppressWarnings("unused")
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private static final Logger logger = LogManager.getLogger(DnaSampleDefaultCacheStrategy.class);
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private static final UUID uuid = UUID.fromString("48e72fbc-9714-4df6-b031-ba361fbf3f59");
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@Override
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protected UUID getUuid() {
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return uuid;
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}
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@Override
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protected String doGetTitleCache(DnaSample dnaSample) {
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String result = getCollectionAndAccession(dnaSample);
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//sample designation
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if (isBlank(result)){
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result = dnaSample.getIdentifierString(DefinedTerm.uuidSampleDesignation);
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}
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//any other identifier
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if (isBlank(result)){
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if (!dnaSample.getIdentifiers().isEmpty()){
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result = dnaSample.getIdentifiers().get(0).getIdentifier();
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}
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}
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if (isBlank(result)){
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if (!dnaSample.getDefinition().isEmpty()){
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Language key = dnaSample.getDefinition().keySet().iterator().next();
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result = truncate(dnaSample.getDefinition().get(key).getText(), 50);
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}
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}
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if (isBlank(result)){
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if (!dnaSample.getSequences().isEmpty()){
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Sequence seq = dnaSample.getSequences().iterator().next();
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if (seq != null){
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result = seq.getSequenceString();
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}
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}
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}
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if (isBlank(result)){
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if (!dnaSample.getSources().isEmpty()){
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for (IdentifiableSource source : dnaSample.getSources()){
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if (isNotBlank(source.getIdInSource())){
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result = CdmUtils.concat(":", source.getIdNamespace(), source.getIdInSource());
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}
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}
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}
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}
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return result;
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}
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//NOTE: this is a first implementation, it may be adapted in future
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@Override
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protected String doGetIdentityCache(DnaSample dnaSample) {
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String result = getCollectionAndAccession(dnaSample);
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//sample designation
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if (isBlank(result)){
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result = dnaSample.getIdentifierString(DefinedTerm.uuidSampleDesignation);
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}
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//any other identifier
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if (isBlank(result)){
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if (!dnaSample.getIdentifiers().isEmpty()){
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result = dnaSample.getIdentifiers().get(0).getIdentifier();
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}
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}
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if (isBlank(result)){
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return doGetTitleCache(dnaSample);
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}else{
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return result;
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}
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}
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}
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