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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.model.name;
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import static org.junit.Assert.*;
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import java.util.HashSet;
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import java.util.Set;
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import org.junit.After;
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import org.junit.AfterClass;
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import org.junit.Before;
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import org.junit.BeforeClass;
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import org.junit.Ignore;
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import org.junit.Test;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.DefaultTermInitializer;
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import eu.etaxonomy.cdm.model.reference.Article;
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import eu.etaxonomy.cdm.model.reference.INomenclaturalReference;
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import eu.etaxonomy.cdm.model.reference.ReferenceBase;
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import eu.etaxonomy.cdm.test.unit.EntityTestBase;
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public class BotanicalNameTest extends EntityTestBase{
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private static final Logger logger = Logger.getLogger(BotanicalNameTest.class);
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private BotanicalName botanicalName1;
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private BotanicalName botanicalName2;
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@BeforeClass
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public static void setUpBeforeClass() {
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DefaultTermInitializer vocabularyStore = new DefaultTermInitializer();
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vocabularyStore.initialize();
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}
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@Before
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public void setUp() throws Exception {
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botanicalName1 = new BotanicalName();
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botanicalName2 = new BotanicalName();
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}
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/****** TESTS *******************************/
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@Test
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public final void testPARSED_NAME() {
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String fullName = "Abies alba subsp. beta (L.) Mill.";
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BotanicalName name = BotanicalName.PARSED_NAME(fullName);
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assertFalse(name.getHasProblem());
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assertEquals("beta", name.getInfraSpecificEpithet());
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}
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@Test
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public final void testBotanicalName() {
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assertNotNull(botanicalName1);
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assertNull(botanicalName1.getRank());
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}
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@Test
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public final void testBotanicalNameRank() {
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Rank genus = Rank.GENUS();
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BotanicalName rankName = BotanicalName.NewInstance(genus);
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assertNotNull(rankName);
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assertSame(genus, rankName.getRank());
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assertTrue(rankName.getRank().isGenus());
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BotanicalName nullRankName = BotanicalName.NewInstance(null);
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assertNotNull(nullRankName);
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assertNull(nullRankName.getRank());
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}
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@Test
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public final void testBotanicalNameRankStringStringStringAgentINomenclaturalReferenceString() {
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Rank rank = Rank.SPECIALFORM();
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String genusOrUninomial = "Genus";
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String infraGenericEpithet = "infraGenericEpi";
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String specificEpithet = "specEpi";
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String infraSpecificEpithet = "infraSpecificEpi";
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TeamOrPersonBase combinationAuthorTeam = Team.NewInstance();
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INomenclaturalReference nomenclaturalReference = Article.NewInstance();
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String nomenclMicroRef = "microRef";
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HomotypicalGroup homotypicalGroup = new HomotypicalGroup();
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BotanicalName fullName = new BotanicalName(rank, genusOrUninomial, infraGenericEpithet, specificEpithet, infraSpecificEpithet, combinationAuthorTeam, nomenclaturalReference, nomenclMicroRef, homotypicalGroup);
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assertEquals(Rank.SPECIALFORM(), fullName.getRank());
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assertEquals("Genus", fullName.getGenusOrUninomial());
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assertEquals("infraGenericEpi", fullName.getInfraGenericEpithet());
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assertEquals("specEpi", fullName.getSpecificEpithet());
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assertEquals("infraSpecificEpi", fullName.getInfraSpecificEpithet());
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assertEquals(combinationAuthorTeam, fullName.getCombinationAuthorTeam());
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assertEquals(nomenclaturalReference, fullName.getNomenclaturalReference());
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assertEquals("microRef", fullName.getNomenclaturalMicroReference());
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assertSame(homotypicalGroup, fullName.getHomotypicalGroup());
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}
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@Test
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public final void testGetHybridRelationships() {
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assertEquals(0, botanicalName1.getHybridRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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HybridRelationship hybridRelationship = new HybridRelationship(femaleParent, botanicalName1, HybridRelationshipType.FEMALE_PARENT(), null );
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botanicalName1.addHybridRelationship(hybridRelationship);
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assertEquals(1, botanicalName1.getHybridRelationships().size());
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assertEquals(hybridRelationship, botanicalName1.getHybridRelationships().iterator().next());
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botanicalName2.addHybridRelationship(null);
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assertEquals(1, botanicalName2.getHybridRelationships().size());
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}
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@Test
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@Ignore
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public final void testSetHybridRelationships() {
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assertEquals(0, botanicalName1.getHybridRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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BotanicalName maleParent = BotanicalName.NewInstance(null);
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HybridRelationship hybridRelationship1 = new HybridRelationship(femaleParent, botanicalName1, HybridRelationshipType.FEMALE_PARENT(), null );
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HybridRelationship hybridRelationship2 = new HybridRelationship(maleParent, botanicalName1, HybridRelationshipType.MALE_PARENT(), null );
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botanicalName1.addHybridRelationship(hybridRelationship1);
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botanicalName1.addHybridRelationship(hybridRelationship2);
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assertEquals(2, botanicalName1.getHybridRelationships().size());
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//TODO
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//assertEquals(2, botanicalName1.getHybridRelationships().size());
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logger.warn("not yet fully implemented");
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botanicalName2.getHybridRelationships().clear();
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//TODO how should this be defined??
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assertTrue(botanicalName2.getHybridRelationships().isEmpty());
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}
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@Test
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public final void testAddHybridRelationship() {
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assertEquals(0, botanicalName1.getHybridRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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HybridRelationship hybridRelationship = new HybridRelationship(femaleParent, botanicalName1, HybridRelationshipType.FEMALE_PARENT(), null );
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botanicalName1.addHybridRelationship(hybridRelationship);
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assertEquals(1, botanicalName1.getHybridRelationships().size());
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botanicalName1.addHybridRelationship(hybridRelationship);
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assertEquals(1, botanicalName1.getHybridRelationships().size());
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assertEquals(hybridRelationship, botanicalName1.getHybridRelationships().iterator().next());
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botanicalName2.addHybridRelationship(null);
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//TODO is this wanted or should it be 0 ??
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assertEquals(1, botanicalName2.getHybridRelationships().size());
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}
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@Test
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public final void testRemoveHybridRelationship() {
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assertEquals(0, botanicalName1.getHybridRelationships().size());
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BotanicalName femaleParent = BotanicalName.NewInstance(null);
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BotanicalName maleParent = BotanicalName.NewInstance(null);
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HybridRelationship hybridRelationship1 = new HybridRelationship(femaleParent, botanicalName1, HybridRelationshipType.FEMALE_PARENT(), null );
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HybridRelationship hybridRelationship2 = new HybridRelationship(maleParent, botanicalName1, HybridRelationshipType.FEMALE_PARENT(), null );
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botanicalName1.addHybridRelationship(hybridRelationship1);
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botanicalName1.addHybridRelationship(hybridRelationship2);
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assertEquals(2, botanicalName1.getHybridRelationships().size());
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botanicalName1.removeHybridRelationship(hybridRelationship1);
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assertEquals(1, botanicalName1.getHybridRelationships().size());
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assertEquals(hybridRelationship2, botanicalName1.getHybridRelationships().iterator().next());
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botanicalName1.removeHybridRelationship(hybridRelationship2);
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assertEquals(0, botanicalName1.getHybridRelationships().size());
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//null
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botanicalName2.addHybridRelationship(null);
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botanicalName2.removeHybridRelationship(null);
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assertEquals(0, botanicalName2.getHybridRelationships().size());
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}
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@Test
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public final void testGetParentRelationships() {
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assertEquals(0, botanicalName1.getParentRelationships().size());
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logger.warn("Not yet implemented"); // TODO
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}
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@Test
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public final void testGetChildRelationships() {
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logger.warn("Not yet implemented"); // TODO
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}
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@Test
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public final void testIsSetHybridFormula() {
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assertFalse(botanicalName1.isHybridFormula());
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botanicalName1.setHybridFormula(true);
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assertTrue(botanicalName1.isHybridFormula());
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botanicalName1.setHybridFormula(false);
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assertFalse(botanicalName1.isHybridFormula());
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}
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@Test
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public final void testIsSetMonomHybrid() {
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assertFalse(botanicalName1.isMonomHybrid());
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botanicalName1.setMonomHybrid(true);
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assertTrue(botanicalName1.isMonomHybrid());
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botanicalName1.setMonomHybrid(false);
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assertFalse(botanicalName1.isMonomHybrid());
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}
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@Test
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public final void testIsSetBinomHybrid() {
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assertFalse(botanicalName1.isBinomHybrid());
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botanicalName1.setBinomHybrid(true);
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assertTrue(botanicalName1.isBinomHybrid());
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botanicalName1.setBinomHybrid(false);
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assertFalse(botanicalName1.isBinomHybrid());
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}
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@Test
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public final void testIsTrinomHybrid() {
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assertFalse(botanicalName1.isTrinomHybrid());
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botanicalName1.setTrinomHybrid(true);
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assertTrue(botanicalName1.isTrinomHybrid());
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botanicalName1.setTrinomHybrid(false);
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assertFalse(botanicalName1.isTrinomHybrid());
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}
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@Test
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public final void testIsAnamorphic() {
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assertFalse(botanicalName1.isAnamorphic());
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botanicalName1.setAnamorphic(true);
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assertTrue(botanicalName1.isAnamorphic());
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botanicalName1.setAnamorphic(false);
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assertFalse(botanicalName1.isAnamorphic());
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}
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}
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