EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.salvador;

import java.io.IOException;

import java.net.URI;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.database.update.CdmUpdater;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.ImportResult;

import eu.etaxonomy.cdm.io.salvador.SalvadorSpecimenImportConfigurator;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.mueller

 */

public class SalvadorSpecimenActivator {

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    protected void doImport(ICdmDataSource cdmDestination){

        URI source = salvadorSpecimen();

        //make Source

        SalvadorSpecimenImportConfigurator config;

        try {

            config = SalvadorSpecimenImportConfigurator.NewInstance(source, cdmDestination);

        } catch (IOException e) {

            String message = "IO Exception when configuring import: " + e.getMessage();

            logger.warn(message);

            return;

        }

        config.setCheck(check);

        config.setDbSchemaValidation(hbm2dll);

        config.setTransactionLineCount(100);

        String fileName = source.toString();

        fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );

        String message = "Start import from ("+ fileName + ") ...";

        System.out.println(message);

        logger.warn(message);

        config.setSourceReference(getSourceReference());

        CdmDefaultImport<SalvadorSpecimenImportConfigurator> myImport

                = new CdmDefaultImport<>();

        ImportResult result = myImport.invoke(config);

        String report = result.createReport().toString();

        System.out.println(report);

        System.out.println("End import from ("+ source.toString() + ")...");

    }

    //SalvadorSpecimen

    public static URI salvadorSpecimen() {

        return URI.create("file:////BGBM-PESIHPC/Salvador/Specimen3.csv");

    }

    private Reference getSourceReference() {

        Reference result = ReferenceFactory.newDatabase();

        result.setTitle("Specimen3.csv");

        return result;

    }

    public void doUpdate(ICdmDataSource cdmDestination){

        CdmUpdater updater = CdmUpdater.NewInstance();

        updater.updateToCurrentVersion(cdmDestination, null);

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        SalvadorSpecimenActivator me = new SalvadorSpecimenActivator();

        me.doImport(cdmDestination);

//        me.doUpdate(cdmDestination);

        System.exit(0);

    }

}