EDIT

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.greece;

import java.util.Arrays;

import java.util.List;

import java.util.regex.Matcher;

import java.util.regex.Pattern;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator;

import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.model.common.Language;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.description.TaxonDescription;

import eu.etaxonomy.cdm.model.description.TextData;

import eu.etaxonomy.cdm.model.taxon.Synonym;

import eu.etaxonomy.cdm.model.taxon.Taxon;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

/**

 * @author a.mueller

 */

@Component

public class FloraHellenicaImageCaptionImport<CONFIG extends FloraHellenicaImportConfigurator>

            extends FloraHellenicaImportBase<CONFIG>{

    private static final long serialVersionUID = 2629253144140992196L;

    private static final Logger logger = Logger.getLogger(FloraHellenicaImageCaptionImport.class);

    private static final String TEXT = "Text";

    protected static Integer startPage = 316;

    private  static List<String> expectedKeys= Arrays.asList(new String[]{

            TEXT

    });

    @Override

    }

    /**

     * {@inheritDoc}

     */

    @Override

    protected void firstPass(SimpleExcelTaxonImportState<CONFIG> state) {

        String line = state.getCurrentLine() + ": ";

        Set<String> keys = record.keySet();

        for (String key: keys) {

            if (! expectedKeys.contains(key)){

                logger.warn(line + "Unexpected key: " + key);

            }

        }

        makeCaption(state, line, record);

    }

    Integer plateNo = 0;

    private Taxon makeCaption(SimpleExcelTaxonImportState<CONFIG> state,

            String line,

        String text = getValue(record, TEXT);

        if (text.matches("Plate \\d\\d?")){

            plateNo = Integer.valueOf(text.substring(6));

            return null;

        }

        Pattern pattern = Pattern.compile(

                "(\\d)\\. ([A-Z][a-z\\-]+ [a-z\\-]+(?: subsp. [a-z\\-]+)?) (\\([A-Z][a-z\\-]+\\))(.*)");

        Matcher matcher = pattern.matcher(text);

        if (!matcher.matches()){

            logger.warn(line + "String caption not recognized: " + text);

            return null;

        }else{

            String subNo = matcher.group(1);

            String name = matcher.group(2);

            name = adaptName(name);

            MatchingTaxonConfigurator matchConfig = new MatchingTaxonConfigurator();

            matchConfig.setTaxonNameTitle(name);

            matchConfig.setIncludeSynonyms(false);

            List<TaxonBase> taxa = getTaxonService().findTaxaByName(matchConfig);

            TaxonBase<?> taxonBase;

            if (taxa.isEmpty()){

                logger.warn(line + "Taxon not found for name: " + name);

                return null;

            }else if (taxa.size() > 1){

                logger.warn(line + "Found more then 1 taxon for name: " + name);

            }

            taxonBase = taxa.get(0);

            Taxon taxon;

            if (taxonBase.isInstanceOf(Synonym.class)){

                taxon = CdmBase.deproxy(taxonBase, Synonym.class).getAcceptedTaxon();

                logger.warn(line + "Taxon name is synonym: " + name);

            }else{

                taxon = CdmBase.deproxy(taxonBase, Taxon.class);

            }

            TaxonDescription td = getTaxonDescription(taxon, false, true);

            String laterText = matcher.group(4);

            if (laterText.startsWith(". This")){

                laterText = laterText.substring(6);

            }

            text = matcher.group(2) + laterText;

            TextData textData = TextData.NewInstance(feature, text, Language.ENGLISH(), null);

            Reference citation = this.getSecReference(state);

            Integer myPage = startPage + plateNo * 2;

            textData.addSource(OriginalSourceType.PrimaryTaxonomicSource, plateNo + "." +subNo

                    , "Plate", citation, "p. " + myPage);

            return taxon;

        }

    }

    /**

     * @param name

     * @return

     */

    private String adaptName(String name) {

        if (name.equals("Lathraea rhodopaea")){

            name = "Lathraea rhodopea";

        }else if (name.equals("Soldanella chrysosticha subsp. chrysosticha")){

            name = "Soldanella chrysosticta subsp. chrysosticta";

        }

        return name;

    }

}