EDIT

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.lichenes;

import java.io.File;

import java.net.URI;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.lichenes.LichenesGeneraImportConfigurator;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.agent.Team;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;

/**

 *

 * Import for lichenes of genera checklist.

 *

 * https://dev.e-taxonomy.eu/redmine/issues/8886

 *

 * @author a.mueller

 * @since 10.03.2020

 */

public class LichenesGeneraActivator {

    @SuppressWarnings("unused")

    private static final Logger logger = Logger.getLogger(LichenesGeneraActivator.class);

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_cdmtest_mysql();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_lichenes();

    //feature tree uuid

//    public static final UUID featureTreeUuid = UUID.fromString("35cf8268-b860-4a0a-81ae-077223116c56");

//    private static final String featureTreeTitle = "Flora of Greece dataportal feature tree";

    //classification

    static final UUID classificationUuid = UUID.fromString("43183724-1919-4036-84ee-3e0e84938f8d");

    private static final String classificationName = "Lichenes";

    static final UUID secRefUuid = UUID.fromString("2c4d58eb-2432-4217-8179-e3739a3d255f");

    static final UUID sourceRefUuid = UUID.fromString("db54eefe-d1cb-44c5-ada2-cfb233cc708b");

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        //make Source

        URI source = lichenesChecklist();

//        URI source = lichenesChecklist_local();

        LichenesGeneraImportConfigurator config = LichenesGeneraImportConfigurator.NewInstance(source, cdmDestination);

        config.setClassificationUuid(classificationUuid);

        config.setClassificationName(classificationName);

        config.setCheck(check);

        config.setDbSchemaValidation(hbm2dll);

//        config.setUuidFeatureTree(featureTreeUuid);

//        config.setFeatureTreeTitle(featureTreeTitle);

        config.setSecReference(getSecReference());

        config.setSourceReference(getSourceReference());

        CdmDefaultImport<LichenesGeneraImportConfigurator> myImport = new CdmDefaultImport<>();

        myImport.invoke(config);

    }

    private URI lichenesChecklist(){

        return URI.create("file:////BGBM-PESIHPC/Lichenes/LichenesGeneraImport.xlsx");

    }

    private URI lichenesChecklist_local(){

//        return URI.create("file://C:\\Users\\a.mueller\\BGBM\\Data\\Lichenes\\LichenesImport.xlsx");

        File file = new File("C:\\Users\\a.mueller\\BGBM\\Data\\Lichenes\\LichenesGeneraImport.xlsx");

    	return file.toURI();

    }

    private Reference secRef;

    private Reference getSecReference(){

        if (secRef != null){

            return secRef;

        }

        Reference result = ReferenceFactory.newArticle();

        result.setTitle("Corrections and amendments to the 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota");

        result.setDatePublished(TimePeriodParser.parseStringVerbatim("2016"));

        Team team = Team.NewInstance();

        Person person = Person.NewInstance();

        person.setInitials("R.");

        person.setFamilyName("Lücking");

        team.addTeamMember(person);

        person = Person.NewInstance();

        person.setInitials("B.P.");

        person.setFamilyName("Hodkinson");

        team.addTeamMember(person);

        person = Person.NewInstance();

        person.setInitials("S.D.");

        person.setFamilyName("Leavitt");

        team.addTeamMember(person);

        result.setAuthorship(team);

//        result.setPublisher("Berlin: Botanic Garden and Botanical Museum Berlin-Dahlem; Athens: Hellenic Botanical Society.");

        result.setVolume("120(1)");

        Reference journal = ReferenceFactory.newJournal();

        journal.setTitle("The Bryologist");

        result.setInReference(journal);

        secRef = result;

        secRef.setUuid(secRefUuid);

        return result;

    }

    private Reference getSourceReference(){

        Reference result = ReferenceFactory.newGeneric();

        result.setTitle("Excelfile (LichenesGeneraImport.xlsx) derived from ");

        result.setInReference(getSecReference());

        result.setUuid(sourceRefUuid);

        return result;

    }

    public static void main(String[] args) {

        LichenesGeneraActivator me = new LichenesGeneraActivator();

        me.doImport(cdmDestination);

        System.exit(0);

    }

}