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38e84b8e
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Andreas Müller
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/**
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* Copyright (C) 2009 EDIT
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a124222b
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Katja Luther
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* European Distributed Institute of Taxonomy
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4 |
38e84b8e
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Andreas Müller
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* http://www.e-taxonomy.eu
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5 |
a124222b
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Katja Luther
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*
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6 |
38e84b8e
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Andreas Müller
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pesi.out;
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7ed5d11a
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Andreas Müller
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import java.sql.ResultSet;
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import java.sql.SQLException;
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13 |
22e0d6ae
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Andreas Müller
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import java.util.EnumSet;
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14 |
7ed5d11a
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Andreas Müller
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import java.util.HashMap;
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15 |
c1a5c2bd
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Andreas Müller
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import java.util.HashSet;
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16 |
7ed5d11a
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Andreas Müller
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import java.util.Map;
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17 |
c1a5c2bd
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Andreas Müller
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import java.util.Set;
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18 |
38e84b8e
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Andreas Müller
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import java.util.UUID;
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7ed5d11a
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Andreas Müller
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import org.apache.commons.lang.StringUtils;
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38e84b8e
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Andreas Müller
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import org.apache.log4j.Logger;
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73441bfb
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Andreas Müller
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import eu.etaxonomy.cdm.common.CdmUtils;
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24 |
0be0671d
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Andreas Müller
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import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
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7ed5d11a
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Andreas Müller
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import eu.etaxonomy.cdm.io.common.Source;
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f98b108b
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Andreas Müller
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.io.common.mapping.out.ExportTransformerBase;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer;
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6cb0766e
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Andreas Müller
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import eu.etaxonomy.cdm.io.pesi.faunaEuropaea.FaunaEuropaeaTransformer;
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22e0d6ae
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Andreas Müller
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import eu.etaxonomy.cdm.io.pesi.out.PesiExportBase.PesiSource;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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07199bfc
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Andreas Müller
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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37 |
bb38665e
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Andreas Müller
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import eu.etaxonomy.cdm.model.location.Country;
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a124222b
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Katja Luther
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import eu.etaxonomy.cdm.model.location.NamedArea;
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96533ef2
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Andreas Müller
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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51688d00
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Andreas Müller
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import eu.etaxonomy.cdm.model.name.TaxonName;
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3dee8a19
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Andreas Müller
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import eu.etaxonomy.cdm.model.reference.Reference;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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3ef2e1bd
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Andreas Müller
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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d9f92b40
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Andreas Müller
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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38e84b8e
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Andreas Müller
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
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/**
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* @author e.-m.lee
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7ed5d11a
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Andreas Müller
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* @author a.mueller (update)
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8e9419c3
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Andreas Müller
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* @since 16.02.2010
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38e84b8e
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Andreas Müller
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*/
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cdf5b39d
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Andreas Müller
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public final class PesiTransformer extends ExportTransformerBase{
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38e84b8e
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Andreas Müller
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8d5e5e53
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Andreas Müller
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private static final Logger logger = Logger.getLogger(PesiTransformer.class);
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a124222b
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Katja Luther
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8d5e5e53
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Andreas Müller
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public static final String AUCT_STRING = "auct.";
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a124222b
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Katja Luther
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7c04aa23
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Andreas Müller
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//sourceRefUUIDs
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d346bae9
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Andreas Müller
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public static final UUID uuidSourceRefEuroMed = UUID.fromString("51b3900c-91e0-4cc5-94f3-577a352ca9c4");
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6cb0766e
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Andreas Müller
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public static final UUID uuidSourceRefFaunaEuropaea = UUID.fromString("f27a5e67-d065-4b79-8d41-eabd3ae0edd0");
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7c04aa23
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Andreas Müller
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public static final UUID uuidSourceRefErms = UUID.fromString("7744bc26-f914-42c4-b54a-dd2a030a8bb7");
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public static final UUID uuidSourceRefIndexFungorum = UUID.fromString("8de25d27-7d40-47f4-af3b-59d64935a843");
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b19e5a61
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Katja Luther
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public static final UUID uuidSourceRefAuct = UUID.fromString("5f79f96c-c100-4cd8-b78e-2b2dacf09a23");
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6cb0766e
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Andreas Müller
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public static final UUID uuidSourceRefFaunaEuropaea_fromSql = UUID.fromString("6786d863-75d4-4796-b916-c1c3dff4cb70");
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a124222b
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Katja Luther
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67426b79
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Andreas Müller
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public static final UUID uuidTaxonValuelessEuroMed = UUID.fromString("f0a9322b-a57e-447b-9a75-a909f2f2a994");
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71cfc2b7
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Andreas Müller
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public static final String SOURCE_STR_EM = "E+M";
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public static final String SOURCE_STR_FE = "FaEu";
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public static final String SOURCE_STR_IF = "IF";
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public static final String SOURCE_STR_ERMS = "ERMS";
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73441bfb
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Andreas Müller
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// status keys
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8d5e5e53
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Andreas Müller
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private static int QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1 = 0;
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private static int QUALITY_STATUS_ADD_BY_DBMT= 2;
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private static int QUALITY_STATUS_CHECKED_EDITOR = 3;
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private static int QUALITY_STATUS_EDITED_BY_DBMT = 4;
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a124222b
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Katja Luther
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b015905a
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Andreas Müller
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// marker type
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public static final UUID uuidMarkerGuidIsMissing = UUID.fromString("24e70843-05e2-44db-954b-84df0d23ea20");
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fc057444
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Katja Luther
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public static final UUID uuidMarkerTypeHasNoLastAction = UUID.fromString("99652d5a-bc92-4251-b57d-0fec4d258ab7");
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b015905a
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Andreas Müller
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// public static final UUID uuidMarkerFossil = UUID.fromString("761ce108-031a-4e07-b444-f8d757070312");
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a124222b
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Katja Luther
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73441bfb
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Andreas Müller
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//extension type uuids
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a6871bd2
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Andreas Müller
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public static final UUID uuidExtCacheCitation = UUID.fromString("29656168-32d6-4301-9067-d57c63be5c67");
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ab90979a
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Katja Luther
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//public static final UUID expertUserIdUuid = UUID.fromString("e25813d3-c67c-4585-9aa0-970fafde50b4");
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//public static final UUID speciesExpertUserIdUuid = UUID.fromString("6d42abd8-8894-4980-ae07-e918affd4172");
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a6871bd2
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Andreas Müller
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public static final UUID uuidExtExpertName = BerlinModelTransformer.uuidExpertName;
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public static final UUID uuidExtSpeciesExpertName = BerlinModelTransformer.uuidSpeciesExpertName;
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public static final UUID uuidExtLastActionDate = UUID.fromString("8d0a7d81-bb83-4576-84c3-8c906ef039b2");
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public static final UUID uuidExtLastAction = UUID.fromString("bc20d5bc-6161-4279-9499-89ea26ce5f6a");
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public static final UUID uuidExtTaxComment = UUID.fromString("8041a752-0479-4626-ab1b-b266b751f816");
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public static final UUID uuidExtFauComment = UUID.fromString("054f773a-41c8-4ad5-83e3-981320c1c126");
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public static final UUID uuidExtFauExtraCodes = UUID.fromString("b8c7e77d-9869-4787-bed6-b4b302dbc5f5");
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106 |
79276af0
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Andreas Müller
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38e84b8e
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Andreas Müller
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// References
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8d5e5e53
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Andreas Müller
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private static int REF_ARTICLE_IN_PERIODICAL = 1;
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private static int REF_PART_OF_OTHER = 2;
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d9f92b40
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Andreas Müller
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public static int REF_BOOK = 3;
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public static int REF_DATABASE = 4;
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8d5e5e53
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Andreas Müller
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private static int REF_INFORMAL = 5;
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private static int REF_NOT_APPLICABLE = 6;
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private static int REF_WEBSITE = 7;
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d9f92b40
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Andreas Müller
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public static int REF_PUBLISHED_CD = 8;
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public static int REF_JOURNAL = 9;
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38e84b8e
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Andreas Müller
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public static int REF_UNRESOLVED = 10;
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d9f92b40
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Andreas Müller
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public static int REF_PUBLICATION = 11;
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5947a91a
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Andreas Müller
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public static String REF_STR_UNRESOLVED = "unresolved";
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a124222b
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Katja Luther
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a2a0c1de
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Andreas Müller
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private static int LANG_UNKNOWN = -99;
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6cb0766e
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Andreas Müller
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private static int LANG_DUTCH = 11;
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private static int LANG_VALENCIAN = 65;
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9d857396
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Andreas Müller
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private static int LANG_HIGH_ARAGONES = 66;
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private static int LANG_MAJORCAN = 67;
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6cb0766e
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Andreas Müller
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38e84b8e
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Andreas Müller
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// NameStatus
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33337032
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Andreas Müller
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public static UUID uuidNomStatusTemporaryName = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");
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8d5e5e53
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Andreas Müller
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private static int NAME_ST_NOM_INVAL = 1;
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private static int NAME_ST_NOM_ILLEG = 2;
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private static int NAME_ST_NOM_NUD = 3;
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private static int NAME_ST_NOM_REJ = 4;
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private static int NAME_ST_NOM_REJ_PROP = 5;
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private static int NAME_ST_NOM_UTIQUE_REJ = 6;
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private static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
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private static int NAME_ST_NOM_CONS = 8;
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private static int NAME_ST_NOM_CONS_PROP = 9;
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private static int NAME_ST_ORTH_CONS = 10;
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private static int NAME_ST_ORTH_CONS_PROP = 11;
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private static int NAME_ST_NOM_SUPERFL = 12;
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private static int NAME_ST_NOM_AMBIG = 13;
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private static int NAME_ST_NOM_PROVIS = 14;
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private static int NAME_ST_NOM_DUB = 15;
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private static int NAME_ST_NOM_NOV = 16;
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private static int NAME_ST_NOM_CONFUS = 17;
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private static int NAME_ST_NOM_ALTERN = 18;
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private static int NAME_ST_COMB_INVAL = 19;
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private static int NAME_ST_LEGITIMATE = 20; // PESI specific from here
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private static int NAME_ST_COMB_INED = 21;
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private static int NAME_ST_COMB_AND_STAT_INED = 22;
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private static int NAME_ST_NOM_AND_ORTH_CONS = 23;
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private static int NAME_ST_NOM_NOV_INED = 24;
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private static int NAME_ST_SP_NOV_INED = 25;
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private static int NAME_ST_ALTERNATE_REPRESENTATION = 26;
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private static int NAME_ST_TEMPORARY_NAME = 27;
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private static int NAME_ST_SPECIES_INQUIRENDA = 28;
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159 |
38e84b8e
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Andreas Müller
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// TaxonStatus
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161 |
b639d1f2
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Andreas Müller
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public static int T_STATUS_ACCEPTED = 1;
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public static int T_STATUS_SYNONYM = 2;
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d9f92b40
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Andreas Müller
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public static int T_STATUS_PARTIAL_SYN = 3;
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public static int T_STATUS_PRO_PARTE_SYN = 4;
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8d5e5e53
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Andreas Müller
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private static int T_STATUS_UNRESOLVED = 5;
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private static int T_STATUS_ORPHANED = 6;
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167 |
73441bfb
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Andreas Müller
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public static int T_STATUS_UNACCEPTED = 7;
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168 |
d9f92b40
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Andreas Müller
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private static int T_STATUS_NOT_ACCEPTED_VALUELESS = 8;
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169 |
a124222b
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Katja Luther
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170 |
4ce34990
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Andreas Müller
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// TypeDesginationStatus // -> not a table anymore
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171 |
8d5e5e53
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Andreas Müller
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private static int TYPE_BY_ORIGINAL_DESIGNATION = 1;
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private static int TYPE_BY_SUBSEQUENT_DESIGNATION = 2;
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private static int TYPE_BY_MONOTYPY = 3;
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private static String TYPE_STR_BY_ORIGINAL_DESIGNATION = "Type by original designation";
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private static String TYPE_STR_BY_SUBSEQUENT_DESIGNATION = "Type by subsequent designation";
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private static String TYPE_STR_BY_MONOTYPY = "Type by monotypy";
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177 |
a124222b
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Katja Luther
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178 |
38e84b8e
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Andreas Müller
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// RelTaxonQualifier
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179 |
8d5e5e53
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Andreas Müller
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private static int IS_BASIONYM_FOR = 1;
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private static int IS_LATER_HOMONYM_OF = 2;
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private static int IS_REPLACED_SYNONYM_FOR = 3;
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private static int IS_VALIDATION_OF = 4;
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private static int IS_LATER_VALIDATION_OF = 5;
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private static int IS_TYPE_OF = 6;
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private static int IS_CONSERVED_TYPE_OF = 7;
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private static int IS_REJECTED_TYPE_OF = 8;
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187 |
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private static int IS_FIRST_PARENT_OF = 9;
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private static int IS_SECOND_PARENT_OF = 10;
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private static int IS_FEMALE_PARENT_OF = 11;
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private static int IS_MALE_PARENT_OF = 12;
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private static int IS_CONSERVED_AGAINST = 13;
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private static int IS_REJECTED_IN_FAVOUR_OF = 14;
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private static int IS_TREATED_AS_LATER_HOMONYM_OF = 15;
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194 |
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private static int IS_ORTHOGRAPHIC_VARIANT_OF = 16;
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private static int IS_ALTERNATIVE_NAME_FOR = 17;
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private static int HAS_SAME_TYPE_AS = 18;
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private static int IS_ORIGINAL_SPELLING_FOR = 19;
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private static int IS_BLOCKING_NAME_FOR = 20;
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private static int IS_LECTOTYPE_OF = 61;
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200 |
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private static int TYPE_NOT_DESIGNATED = 62;
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201 |
d9f92b40
|
Andreas Müller
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public static int IS_TAXONOMICALLY_INCLUDED_IN = 101;
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202 |
38e84b8e
|
Andreas Müller
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public static int IS_SYNONYM_OF = 102;
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203 |
8d5e5e53
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Andreas Müller
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private static int IS_MISAPPLIED_NAME_FOR = 103;
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204 |
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private static int IS_PRO_PARTE_SYNONYM_OF = 104;
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205 |
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private static int IS_PARTIAL_SYNONYM_OF = 105;
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private static int IS_HETEROTYPIC_SYNONYM_OF = 106;
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207 |
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private static int IS_HOMOTYPIC_SYNONYM_OF = 107;
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208 |
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private static int IS_PRO_PARTE_MISAPPLIED_NAME_FOR = 108;
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209 |
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private static int IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF = 201;
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210 |
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private static int IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF = 202;
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private static int IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF = 203;
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private static int IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF = 204;
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private static int IS_INFERRED_EPITHET_FOR = 301;
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private static int IS_INFERRED_GENUS_FOR = 302;
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215 |
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private static int IS_POTENTIAL_COMBINATION_FOR = 303;
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216 |
38e84b8e
|
Andreas Müller
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217 |
96533ef2
|
Andreas Müller
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//namespaces
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218 |
296eddfb
|
Andreas Müller
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public static String STR_NAMESPACE_NOMINAL_TAXON = "Nominal taxon from TAX_ID:";
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219 |
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public static String STR_NAMESPACE_INFERRED_EPITHET = "Inferred epithet from TAX_ID:";
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220 |
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public static String STR_NAMESPACE_INFERRED_GENUS = "Inferred genus from TAX_ID:";
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221 |
|
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public static String STR_NAMESPACE_POTENTIAL_COMBINATION = "Potential combination from TAX_ID:";
|
222 |
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|
|
223 |
|
|
// Kingdoms
|
224 |
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|
private static final int KINGDOM_NULL = 0;
|
225 |
|
|
private static final int KINGDOM_ANIMALIA = 2;
|
226 |
|
|
private static final int KINGDOM_PLANTAE = 3;
|
227 |
|
|
private static final int KINGDOM_FUNGI = 4;
|
228 |
|
|
private static final int KINGDOM_PROTOZOA = 5;
|
229 |
|
|
private static final int KINGDOM_BACTERIA = 6;
|
230 |
|
|
private static final int KINGDOM_CHROMISTA = 7;
|
231 |
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|
|
232 |
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// Kingdoms
|
233 |
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|
private static Map<String, Integer> pesiKingdomMap = new HashMap<>();
|
234 |
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|
|
235 |
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|
//Kingdom title
|
236 |
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|
private static String KINGDOM_PLANTAE_STRING = "Plantae";
|
237 |
|
|
private static String KINGDOM_FUNGI_STRING = "Fungi";
|
238 |
|
|
private static String KINGDOM_PROTOZOA_STRING = "Protozoa";
|
239 |
|
|
private static String kINGDOM_BACTERIA_STRING = "Bacteria";
|
240 |
|
|
private static String KINGDOM_CHROMISTA_STRING = "Chromista";
|
241 |
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|
242 |
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|
//ranks of all kingdoms
|
243 |
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|
private static int Kingdom = 10;
|
244 |
|
|
private static int Subkingdom = 20;
|
245 |
|
|
private static int Phylum = 30; //Phylum and Division is same (#8541) according to ICNAFP
|
246 |
|
|
private static int Division = 30;
|
247 |
|
|
private static int Subphylum = 40; //See above comment
|
248 |
|
|
private static int Subdivision = 40;
|
249 |
|
|
private static int Class = 60;
|
250 |
|
|
private static int Subclass = 70;
|
251 |
|
|
private static int Order = 100;
|
252 |
|
|
private static int Suborder = 110;
|
253 |
|
|
private static int Family = 140;
|
254 |
|
|
private static int Subfamily = 150;
|
255 |
|
|
private static int Tribe = 160;
|
256 |
|
|
private static int Subtribe = 170;
|
257 |
|
|
private static int Genus = 180;
|
258 |
|
|
private static int Subgenus = 190;
|
259 |
|
|
private static int Species =220;
|
260 |
|
|
private static int Subspecies = 230;
|
261 |
|
|
private static int Variety = 240;
|
262 |
|
|
private static int Forma = 260;
|
263 |
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|
264 |
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//ranks of some kingdoms
|
265 |
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|
private static int Infrakingdom = 25; //2,3,5,7
|
266 |
|
|
private static int Infraphylum = 45; //2,7
|
267 |
|
|
private static int Superclass = 50; //2,5,6,7
|
268 |
|
|
private static int Infraclass = 80; //2,5,6,7
|
269 |
|
|
private static int Superorder = 90; //2,3,5,6,7
|
270 |
|
|
private static int Infraorder = 120; //2,5,6,7
|
271 |
|
|
private static int Superfamily = 130; //2,5,6,7
|
272 |
|
|
private static int Bot_Section = 200; //3,4,7
|
273 |
|
|
private static int Bot_Subsection = 210; //3,4,7
|
274 |
|
|
private static int Subvariety = 250; //2,3,4,7
|
275 |
|
|
private static int Subform = 270; //2,3,4
|
276 |
|
|
private static int Forma_spec = 275; //3,4,5,7
|
277 |
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|
|
278 |
|
|
// Animalia Ranks
|
279 |
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|
private static int Superphylum = 28;
|
280 |
|
|
private static int Subterclass = 85;
|
281 |
|
|
private static int Parvorder = 122;
|
282 |
|
|
private static int Animalia_Section = 125;
|
283 |
|
|
private static int Animalia_Subsection = 127;
|
284 |
|
|
private static int Natio = 235;
|
285 |
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|
|
286 |
|
|
// Plantae Ranks
|
287 |
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|
private static int Series = 212;
|
288 |
|
|
private static int Subseries = 214;
|
289 |
|
|
private static int Aggregate = 216;
|
290 |
|
|
private static int Coll_Species = 218;
|
291 |
|
|
private static int Grex = 225;
|
292 |
|
|
private static int Proles = 232;
|
293 |
|
|
private static int Race = 234;
|
294 |
|
|
private static int Convarietas = 236;
|
295 |
|
|
private static int Taxa_infragen = 280;
|
296 |
|
|
private static int Taxa_infraspec = 285;
|
297 |
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|
298 |
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|
299 |
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|
//NoteCategory
|
300 |
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|
private static int NoteCategory_description = 1;
|
301 |
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|
public static int NoteCategory_ecology = 4;
|
302 |
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|
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|
private static int NoteCategory_phenology = 5;
|
303 |
|
|
private static int NoteCategory_general_distribution_euromed = 10;
|
304 |
|
|
private static int NoteCategory_general_distribution_world = 11;
|
305 |
|
|
private static int NoteCategory_Common_names = 12;
|
306 |
|
|
private static int NoteCategory_Occurrence = 13;
|
307 |
|
|
private static int NoteCategory_Maps =14;
|
308 |
|
|
private static int NoteCategory_Link_to_maps = 20;
|
309 |
|
|
private static int NoteCategory_Link_to_images = 21;
|
310 |
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|
public static int NoteCategory_Link_to_taxonomy = 22;
|
311 |
|
|
public static int NoteCategory_Link_to_general_information = 23;
|
312 |
|
|
public static int NoteCategory_undefined_link = 24;
|
313 |
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|
private static int NoteCategory_Editor_Braces = 249;
|
314 |
|
|
private static int NoteCategory_Editor_Brackets = 250;
|
315 |
|
|
private static int NoteCategory_Editor_Parenthesis = 251;
|
316 |
|
|
private static int NoteCategory_Inedited = 252;
|
317 |
|
|
private static int NoteCategory_Comments_on_editing_process = 253;
|
318 |
|
|
private static int NoteCategory_Publication_date = 254;
|
319 |
|
|
private static int NoteCategory_Morphology = 255;
|
320 |
|
|
private static int NoteCategory_Acknowledgments = 257;
|
321 |
|
|
private static int NoteCategory_Original_publication = 258;
|
322 |
|
|
private static int NoteCategory_Type_locality = 259;
|
323 |
|
|
private static int NoteCategory_Environment = 260;
|
324 |
|
|
private static int NoteCategory_Spelling = 261;
|
325 |
|
|
private static int NoteCategory_Systematics = 262;
|
326 |
|
|
private static int NoteCategory_Remark = 263;
|
327 |
|
|
private static int NoteCategory_Additional_information = 266;
|
328 |
|
|
private static int NoteCategory_Status = 267;
|
329 |
|
|
private static int NoteCategory_Nomenclature = 268;
|
330 |
|
|
private static int NoteCategory_Homonymy = 269;
|
331 |
|
|
private static int NoteCategory_Taxonomy = 270;
|
332 |
|
|
private static int NoteCategory_Taxonomic_status = 272;
|
333 |
|
|
private static int NoteCategory_Authority = 273;
|
334 |
|
|
private static int NoteCategory_Identification = 274;
|
335 |
|
|
private static int NoteCategory_Validity = 275;
|
336 |
|
|
private static int NoteCategory_Classification = 276;
|
337 |
|
|
private static int NoteCategory_Distribution = 278;
|
338 |
|
|
private static int NoteCategory_Synonymy = 279;
|
339 |
|
|
private static int NoteCategory_Habitat = 280;
|
340 |
|
|
private static int NoteCategory_Biology = 281;
|
341 |
|
|
private static int NoteCategory_Diagnosis = 282;
|
342 |
|
|
private static int NoteCategory_Host = 283;
|
343 |
|
|
private static int NoteCategory_Note = 284;
|
344 |
|
|
private static int NoteCategory_Rank = 285;
|
345 |
|
|
private static int NoteCategory_Taxonomic_Remark = 286;
|
346 |
|
|
private static int NoteCategory_Taxonomic_Remarks = 287;
|
347 |
|
|
private static int NoteCategory_Etymology = 288;
|
348 |
|
|
private static int NoteCategory_Type_species = 289;
|
349 |
|
|
private static int NoteCategory_Depth_Range = 290;
|
350 |
|
|
private static int NoteCategory_Grammatical_Gender = 291;
|
351 |
|
|
private static int NoteCategory_Introduced_Species_Remark = 292;
|
352 |
|
|
private static int NoteCategory_Alien_Species = 293;
|
353 |
|
|
private static int NoteCategory_Dimensions = 294;
|
354 |
|
|
private static int NoteCategory_New_Combination = 295;
|
355 |
|
|
private static int NoteCategory_Original_Combination = 296;
|
356 |
|
|
|
357 |
|
|
private static int NoteCategory_Conservation_Status= 301;
|
358 |
|
|
private static int NoteCategory_Use = 302;
|
359 |
|
|
private static int NoteCategory_Comments = 303;
|
360 |
|
|
private static int NoteCategory_Diet = 304;
|
361 |
|
|
private static int NoteCategory_Fossil_Range = 305;
|
362 |
|
|
private static int NoteCategory_Original_Description = 306;
|
363 |
|
|
private static int NoteCategory_Reproduction = 307;
|
364 |
|
|
private static int NoteCategory_Specimen = 308;
|
365 |
|
|
private static int NoteCategory_Type_Specimen = 309;
|
366 |
|
|
private static int NoteCategory_Type_Material = 310;
|
367 |
|
|
private static int NoteCategory_Editors_Comment = 311;
|
368 |
|
|
private static int NoteCategory_Syntype = 312;
|
369 |
5312971d
|
Andreas Müller
|
|
370 |
38e84b8e
|
Andreas Müller
|
// FossilStatus
|
371 |
8d5e5e53
|
Andreas Müller
|
private static int FOSSILSTATUS_RECENT_ONLY = 1;
|
372 |
|
|
private static int FOSSILSTATUS_FOSSIL_ONLY = 2;
|
373 |
|
|
private static int FOSSILSTATUS_RECENT_FOSSIL = 3;
|
374 |
4ce34990
|
Andreas Müller
|
public static String STR_FOSSIL_ONLY = "fossil only"; //still used for Index Fungorum
|
375 |
a124222b
|
Katja Luther
|
|
376 |
38e84b8e
|
Andreas Müller
|
// SourceUse
|
377 |
8d5e5e53
|
Andreas Müller
|
private static int ORIGINAL_DESCRIPTION = 1;
|
378 |
|
|
private static int BASIS_OF_RECORD = 2;
|
379 |
|
|
private static int ADDITIONAL_SOURCE = 3;
|
380 |
|
|
private static int SOURCE_OF_SYNONYMY = 4;
|
381 |
|
|
private static int REDESCRIPTION = 5;
|
382 |
|
|
private static int NEW_COMBINATION_REFERENCE = 6;
|
383 |
|
|
private static int STATUS_SOURCE = 7;
|
384 |
38e84b8e
|
Andreas Müller
|
public static int NOMENCLATURAL_REFERENCE = 8;
|
385 |
5947a91a
|
Andreas Müller
|
public static String STR_NOMENCLATURAL_REFERENCE = "nomenclatural reference";
|
386 |
38e84b8e
|
Andreas Müller
|
|
387 |
|
|
// Area
|
388 |
8d5e5e53
|
Andreas Müller
|
private static int AREA_EAST_AEGEAN_ISLANDS = 1;
|
389 |
|
|
private static int AREA_GREEK_EAST_AEGEAN_ISLANDS = 2;
|
390 |
|
|
private static int AREA_TURKISH_EAST_AEGEAN_ISLANDS = 3;
|
391 |
|
|
private static int AREA_ALBANIA = 4;
|
392 |
|
|
private static int AREA_AUSTRIA_WITH_LIECHTENSTEIN = 5;
|
393 |
|
|
private static int AREA_AUSTRIA = 6;
|
394 |
|
|
private static int AREA_LIECHTENSTEIN = 7;
|
395 |
|
|
private static int AREA_AZORES = 8;
|
396 |
|
|
private static int AREA_CORVO = 9;
|
397 |
|
|
private static int AREA_FAIAL = 10;
|
398 |
|
|
private static int AREA_GRACIOSA = 11;
|
399 |
|
|
private static int AREA_SAO_JORGE = 12;
|
400 |
|
|
private static int AREA_FLORES = 13;
|
401 |
|
|
private static int AREA_SAO_MIGUEL = 14;
|
402 |
|
|
private static int AREA_PICO = 15;
|
403 |
|
|
private static int AREA_SANTA_MARIA = 16;
|
404 |
|
|
private static int AREA_TERCEIRA = 17;
|
405 |
|
|
private static int AREA_BELGIUM_WITH_LUXEMBOURG = 18;
|
406 |
|
|
private static int AREA_BELGIUM = 19;
|
407 |
|
|
private static int AREA_LUXEMBOURG = 20;
|
408 |
|
|
private static int AREA_BOSNIA_HERZEGOVINA = 21;
|
409 |
|
|
private static int AREA_BALEARES = 22;
|
410 |
|
|
private static int AREA_IBIZA_WITH_FORMENTERA = 23;
|
411 |
|
|
private static int AREA_MALLORCA = 24;
|
412 |
|
|
private static int AREA_MENORCA = 25;
|
413 |
|
|
private static int AREA_GREAT_BRITAIN = 26;
|
414 |
|
|
private static int AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION = 27;
|
415 |
|
|
private static int AREA_BULGARIA = 28;
|
416 |
|
|
private static int AREA_BELARUS = 29;
|
417 |
|
|
private static int AREA_CANARY_ISLANDS = 30;
|
418 |
|
|
private static int AREA_GRAN_CANARIA = 31;
|
419 |
|
|
private static int AREA_FUERTEVENTURA_WITH_LOBOS = 32;
|
420 |
|
|
private static int AREA_GOMERA = 33;
|
421 |
|
|
private static int AREA_HIERRO = 34;
|
422 |
|
|
private static int AREA_LANZAROTE_WITH_GRACIOSA = 35;
|
423 |
|
|
private static int AREA_LA_PALMA = 36;
|
424 |
|
|
private static int AREA_TENERIFE = 37;
|
425 |
|
|
private static int AREA_MONTENEGRO = 38;
|
426 |
|
|
private static int AREA_CORSE = 39;
|
427 |
|
|
private static int AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS = 40;
|
428 |
|
|
private static int AREA_CZECH_REPUBLIC = 41;
|
429 |
|
|
private static int AREA_CROATIA = 42;
|
430 |
|
|
private static int AREA_CYPRUS = 43;
|
431 |
|
|
private static int AREA_FORMER_CZECHOSLOVAKIA = 44;
|
432 |
|
|
private static int AREA_DENMARK_WITH_BORNHOLM = 45;
|
433 |
|
|
private static int AREA_ESTONIA = 46;
|
434 |
|
|
private static int AREA_FAROE_ISLANDS = 47;
|
435 |
|
|
private static int AREA_FINLAND_WITH_AHVENANMAA = 48;
|
436 |
|
|
private static int AREA_FRANCE = 49;
|
437 |
|
|
private static int AREA_CHANNEL_ISLANDS = 50;
|
438 |
|
|
private static int AREA_FRENCH_MAINLAND = 51;
|
439 |
|
|
private static int AREA_MONACO = 52;
|
440 |
|
|
private static int AREA_GERMANY = 53;
|
441 |
|
|
private static int AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS = 54;
|
442 |
|
|
private static int AREA_IRELAND = 55;
|
443 |
|
|
private static int AREA_REPUBLIC_OF_IRELAND = 56;
|
444 |
|
|
private static int AREA_NORTHERN_IRELAND = 57;
|
445 |
|
|
private static int AREA_SWITZERLAND = 58;
|
446 |
|
|
private static int AREA_NETHERLANDS = 59;
|
447 |
|
|
private static int AREA_SPAIN = 60;
|
448 |
|
|
private static int AREA_ANDORRA = 61;
|
449 |
|
|
private static int AREA_GIBRALTAR = 62;
|
450 |
|
|
private static int AREA_KINGDOM_OF_SPAIN = 63;
|
451 |
|
|
private static int AREA_HUNGARY = 64;
|
452 |
|
|
private static int AREA_ICELAND = 65;
|
453 |
|
|
private static int AREA_ITALY = 66;
|
454 |
|
|
private static int AREA_ITALIAN_MAINLAND = 67;
|
455 |
|
|
private static int AREA_SAN_MARINO = 68;
|
456 |
|
|
private static int AREA_FORMER_JUGOSLAVIA = 69;
|
457 |
|
|
private static int AREA_LATVIA = 70;
|
458 |
|
|
private static int AREA_LITHUANIA = 71;
|
459 |
|
|
private static int AREA_PORTUGUESE_MAINLAND = 72;
|
460 |
|
|
private static int AREA_MADEIRA_ARCHIPELAGO = 73;
|
461 |
|
|
private static int AREA_DESERTAS = 74;
|
462 |
|
|
private static int AREA_MADEIRA = 75;
|
463 |
|
|
private static int AREA_PORTO_SANTO = 76;
|
464 |
|
|
private static int AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA = 77;
|
465 |
|
|
private static int AREA_MOLDOVA = 78;
|
466 |
|
|
private static int AREA_NORWEGIAN_MAINLAND = 79;
|
467 |
|
|
private static int AREA_POLAND = 80;
|
468 |
|
|
private static int AREA_THE_RUSSIAN_FEDERATION = 81;
|
469 |
|
|
private static int AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND = 82;
|
470 |
|
|
private static int AREA_CENTRAL_EUROPEAN_RUSSIA = 83;
|
471 |
|
|
private static int AREA_EASTERN_EUROPEAN_RUSSIA = 84;
|
472 |
|
|
private static int AREA_KALININGRAD = 85;
|
473 |
|
|
private static int AREA_NORTHERN_EUROPEAN_RUSSIA = 86;
|
474 |
|
|
private static int AREA_NORTHWEST_EUROPEAN_RUSSIA = 87;
|
475 |
|
|
private static int AREA_SOUTH_EUROPEAN_RUSSIA = 88;
|
476 |
|
|
private static int AREA_ROMANIA = 89;
|
477 |
|
|
private static int AREA_FORMER_USSR = 90;
|
478 |
|
|
private static int AREA_RUSSIA_BALTIC = 91;
|
479 |
|
|
private static int AREA_RUSSIA_CENTRAL = 92;
|
480 |
|
|
private static int AREA_RUSSIA_SOUTHEAST = 93;
|
481 |
|
|
private static int AREA_RUSSIA_NORTHERN = 94;
|
482 |
|
|
private static int AREA_RUSSIA_SOUTHWEST = 95;
|
483 |
|
|
private static int AREA_SARDEGNA = 96;
|
484 |
|
|
private static int AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN = 97;
|
485 |
|
|
private static int AREA_SELVAGENS_ISLANDS = 98;
|
486 |
|
|
private static int AREA_SICILY_WITH_MALTA = 99;
|
487 |
|
|
private static int AREA_MALTA = 100;
|
488 |
|
|
private static int AREA_SICILY = 101;
|
489 |
|
|
private static int AREA_SLOVAKIA = 102;
|
490 |
|
|
private static int AREA_SLOVENIA = 103;
|
491 |
|
|
private static int AREA_SERBIA_WITH_MONTENEGRO = 104;
|
492 |
|
|
private static int AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO = 105;
|
493 |
|
|
private static int AREA_SWEDEN = 106;
|
494 |
|
|
private static int AREA_EUROPEAN_TURKEY = 107;
|
495 |
|
|
private static int AREA_UKRAINE_INCLUDING_CRIMEA = 108;
|
496 |
|
|
private static int AREA_CRIMEA = 109;
|
497 |
|
|
private static int AREA_UKRAINE = 110;
|
498 |
|
|
private static int AREA_GREEK_MAINLAND = 111;
|
499 |
|
|
private static int AREA_CRETE = 112;
|
500 |
|
|
private static int AREA_DODECANESE_ISLANDS = 113;
|
501 |
|
|
private static int AREA_CYCLADES_ISLANDS = 114;
|
502 |
|
|
private static int AREA_NORTH_AEGEAN_ISLANDS = 115;
|
503 |
|
|
private static int AREA_VATICAN_CITY = 116;
|
504 |
|
|
private static int AREA_FRANZ_JOSEF_LAND = 117;
|
505 |
|
|
private static int AREA_NOVAYA_ZEMLYA = 118;
|
506 |
|
|
private static int AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN = 119;
|
507 |
|
|
private static int AREA_AZERBAIJAN = 120;
|
508 |
|
|
private static int AREA_NAKHICHEVAN = 121;
|
509 |
|
|
private static int AREA_ALGERIA = 122;
|
510 |
|
|
private static int AREA_ARMENIA = 123;
|
511 |
|
|
private static int AREA_CAUCASUS_REGION = 124;
|
512 |
|
|
private static int AREA_EGYPT = 125;
|
513 |
|
|
private static int AREA_GEORGIA = 126;
|
514 |
|
|
private static int AREA_ISRAEL_JORDAN = 127;
|
515 |
|
|
private static int AREA_ISRAEL = 128;
|
516 |
|
|
private static int AREA_JORDAN = 129;
|
517 |
|
|
private static int AREA_LEBANON = 130;
|
518 |
|
|
private static int AREA_LIBYA = 131;
|
519 |
|
|
private static int AREA_LEBANON_SYRIA = 132;
|
520 |
|
|
private static int AREA_MOROCCO = 133;
|
521 |
|
|
private static int AREA_NORTH_CAUCASUS = 134;
|
522 |
|
|
private static int AREA_SINAI = 135;
|
523 |
|
|
private static int AREA_SYRIA = 136;
|
524 |
|
|
private static int AREA_TUNISIA = 137;
|
525 |
|
|
private static int AREA_ASIATIC_TURKEY = 138;
|
526 |
|
|
private static int AREA_TURKEY = 139;
|
527 |
|
|
private static int AREA_NORTHERN_AFRICA = 140;
|
528 |
|
|
private static int AREA_AFRO_TROPICAL_REGION = 141;
|
529 |
|
|
private static int AREA_AUSTRALIAN_REGION = 142;
|
530 |
|
|
private static int AREA_EAST_PALAEARCTIC = 143;
|
531 |
|
|
private static int AREA_NEARCTIC_REGION = 144;
|
532 |
|
|
private static int AREA_NEOTROPICAL_REGION = 145;
|
533 |
|
|
private static int AREA_NEAR_EAST = 146;
|
534 |
|
|
private static int AREA_ORIENTAL_REGION = 147;
|
535 |
|
|
private static int AREA_EUROPEAN_MARINE_WATERS = 148;
|
536 |
|
|
private static int AREA_MEDITERRANEAN_SEA = 149;
|
537 |
|
|
private static int AREA_WHITE_SEA = 150;
|
538 |
|
|
private static int AREA_NORTH_SEA = 151;
|
539 |
|
|
private static int AREA_BALTIC_SEA = 152;
|
540 |
|
|
private static int AREA_BLACK_SEA = 153;
|
541 |
|
|
private static int AREA_BARENTS_SEA = 154;
|
542 |
|
|
private static int AREA_CASPIAN_SEA = 155;
|
543 |
|
|
private static int AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE = 156;
|
544 |
|
|
private static int AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE = 157;
|
545 |
|
|
private static int AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE = 158;
|
546 |
|
|
private static int AREA_ENGLISH_CHANNEL = 159;
|
547 |
|
|
private static int AREA_ADRIATIC_SEA = 160;
|
548 |
|
|
private static int AREA_BISCAY_BAY = 161;
|
549 |
|
|
private static int AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE = 162;
|
550 |
|
|
private static int AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE = 163;
|
551 |
|
|
private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE = 164;
|
552 |
|
|
private static int AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE = 165;
|
553 |
|
|
private static int AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE = 166;
|
554 |
|
|
private static int AREA_TIRRENO_SEA = 167;
|
555 |
|
|
private static int AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE = 168;
|
556 |
|
|
private static int AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE = 169;
|
557 |
|
|
private static int AREA_IRISH_SEA = 170;
|
558 |
|
|
private static int AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE = 171;
|
559 |
|
|
private static int AREA_NORWEGIAN_SEA = 172;
|
560 |
|
|
private static int AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE = 173;
|
561 |
|
|
private static int AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE = 174;
|
562 |
|
|
private static int AREA_SKAGERRAK = 175;
|
563 |
|
|
private static int AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE = 176;
|
564 |
|
|
private static int AREA_WADDEN_SEA = 177;
|
565 |
|
|
private static int AREA_BELT_SEA = 178;
|
566 |
|
|
private static int AREA_MARMARA_SEA = 179;
|
567 |
|
|
private static int AREA_SEA_OF_AZOV = 180;
|
568 |
|
|
private static int AREA_AEGEAN_SEA = 181;
|
569 |
|
|
private static int AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE = 182;
|
570 |
|
|
private static int AREA_SOUTH_BALTIC_PROPER = 183;
|
571 |
|
|
private static int AREA_BALTIC_PROPER = 184;
|
572 |
|
|
private static int AREA_NORTH_BALTIC_PROPER = 185;
|
573 |
|
|
private static int AREA_ARCHIPELAGO_SEA = 186;
|
574 |
|
|
private static int AREA_BOTHNIAN_SEA = 187;
|
575 |
|
|
private static int AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE = 188;
|
576 |
|
|
private static int AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE = 189;
|
577 |
|
|
private static int AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE = 190;
|
578 |
|
|
private static int AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE = 191;
|
579 |
|
|
private static int AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE = 192;
|
580 |
|
|
private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART = 193;
|
581 |
|
|
private static int AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE = 194;
|
582 |
|
|
private static int AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE = 195;
|
583 |
|
|
private static int AREA_BALEAR_SEA = 196;
|
584 |
|
|
private static int AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE = 197;
|
585 |
|
|
private static int AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE = 198;
|
586 |
|
|
private static int AREA_TRANSCAUCASUS = 199;
|
587 |
|
|
|
588 |
|
|
private static int AREA_GEORGIA_G = 200;
|
589 |
|
|
private static int AREA_ABKHAZIA = 201;
|
590 |
|
|
private static int AREA_ADZARIA = 202;
|
591 |
|
|
|
592 |
|
|
private static int AREA_UNITED_KINGDOM = 203;
|
593 |
|
|
private static int AREA_DENMARK_COUNTRY = 204;
|
594 |
|
|
private static int AREA_TURKEY_COUNTRY = 205;
|
595 |
|
|
private static int AREA_SPAIN_COUNTRY = 206;
|
596 |
|
|
private static int AREA_GREECE_COUNTRY = 207;
|
597 |
|
|
private static int AREA_PORTUGAL_COUNTRY = 208;
|
598 |
81bc4733
|
Andreas Müller
|
//continued ERMS areas without variables
|
599 |
|
|
//...
|
600 |
8d5e5e53
|
Andreas Müller
|
private static int AREA_WALES = 293;
|
601 |
ce2d36db
|
Andreas Müller
|
|
602 |
|
|
//new E+M areas
|
603 |
|
|
private static int AREA_SERBIA = 294;
|
604 |
|
|
private static int AREA_KOSOVO = 295;
|
605 |
|
|
|
606 |
6cb0766e
|
Andreas Müller
|
|
607 |
|
|
//FauEu area UUIDs
|
608 |
|
|
private static UUID uuidAreaAD = UUID.fromString("38dd31d2-8275-4b05-8b85-eb71a390d67f");
|
609 |
|
|
private static UUID uuidAreaAFR = UUID.fromString("c3123386-51a4-42a4-9ff4-b3905b18a83c");//x
|
610 |
|
|
private static UUID uuidAreaAL = UUID.fromString("84c54f15-fc90-44bb-a45d-26b7daa26ceb");
|
611 |
|
|
private static UUID uuidAreaAT = UUID.fromString("d285e4a5-d027-4610-a4ff-f5e6dd16cdc3");
|
612 |
|
|
private static UUID uuidAreaAUS = UUID.fromString("930e6455-de5e-4002-bfc3-45eecd07e4f3");//x
|
613 |
|
|
private static UUID uuidAreaBA = UUID.fromString("946a06ea-200f-409e-bb2f-05e64e55ed41");
|
614 |
|
|
private static UUID uuidAreaBE = UUID.fromString("f914f7fd-d5a3-4165-8409-004f197ae4e9");
|
615 |
|
|
private static UUID uuidAreaBG = UUID.fromString("9586daca-a739-4d28-836e-6d15861375e1");
|
616 |
|
|
private static UUID uuidAreaBY = UUID.fromString("b6f94a56-990d-41da-8e92-abf757afeca1");
|
617 |
|
|
private static UUID uuidAreaCH = UUID.fromString("cccc1da5-6a0e-47c2-900e-e274fd593ff0");
|
618 |
|
|
private static UUID uuidAreaCY = UUID.fromString("78950366-3f15-48bb-80c9-8b24afedcd3c");
|
619 |
|
|
private static UUID uuidAreaCZ = UUID.fromString("d1221dbc-a7c5-4805-b7c8-15ae56557825");
|
620 |
|
|
private static UUID uuidAreaDE = UUID.fromString("6f31223e-9a10-4c97-b482-85d96f195a23");
|
621 |
|
|
private static UUID uuidAreaDK_DEN = UUID.fromString("4ed51fa9-f89a-47c8-a9ce-43d462f74c53");
|
622 |
|
|
private static UUID uuidAreaDK_FOR = UUID.fromString("272874cf-b6f7-4805-8a0c-1a0efbbf0a21");
|
623 |
|
|
private static UUID uuidAreaEE = UUID.fromString("1472705d-c94e-41e8-9482-adb46f201f71");
|
624 |
|
|
private static UUID uuidAreaEPA = UUID.fromString("2f162235-6c5a-4ad4-8ba0-8dca28826dab");//x
|
625 |
|
|
private static UUID uuidAreaES_BAL = UUID.fromString("d5466ee2-38fa-47e8-8109-008b71a2f47b");
|
626 |
|
|
private static UUID uuidAreaES_CNY = UUID.fromString("1f19cdaa-af1e-406c-bb58-25f17ee00228");
|
627 |
|
|
private static UUID uuidAreaES_SPA = UUID.fromString("d3cc7b05-b506-44b7-a49a-77d36974bd5f");
|
628 |
|
|
private static UUID uuidAreaFI = UUID.fromString("93d6e2ba-308b-4d57-851c-94583e139806");
|
629 |
|
|
private static UUID uuidAreaFR_COR = UUID.fromString("f7088b27-805f-46df-916f-eeed47a2e336");
|
630 |
|
|
private static UUID uuidAreaFR_FRA = UUID.fromString("83d2df98-c0b4-4ad8-9a02-7cdfcfa74371");
|
631 |
|
|
private static UUID uuidAreaGB_CI = UUID.fromString("a97807d0-e7e2-4ee0-8567-07f3a72d91bb");
|
632 |
|
|
private static UUID uuidAreaGB_GI = UUID.fromString("4441b42a-7c9f-4a39-89d6-5c9c9dab9c05");
|
633 |
|
|
private static UUID uuidAreaGB_GRB = UUID.fromString("94561875-19a6-4bf4-ade7-340c245ffd67");
|
634 |
|
|
private static UUID uuidAreaGB_NI = UUID.fromString("791be300-6e86-4253-b1ba-aef46ea6bfb9");
|
635 |
|
|
private static UUID uuidAreaGR_AEG = UUID.fromString("efb2f01a-f01e-4da2-ba02-464b0e1687e5");//x
|
636 |
|
|
private static UUID uuidAreaGR_CYC = UUID.fromString("f9ad21b1-c9ed-4062-9086-cba6e6ef353b");//x
|
637 |
|
|
private static UUID uuidAreaGR_DOD = UUID.fromString("7a84feae-9d93-4408-8122-e82b9485fc0f");//x
|
638 |
|
|
private static UUID uuidAreaGR_GRC = UUID.fromString("a392dbac-8671-40e6-95c7-a0d2db8f7d9c");//x
|
639 |
|
|
private static UUID uuidAreaGR_KRI = UUID.fromString("ed8e7bcd-2267-4953-b422-bc2ff45238f7");//x
|
640 |
|
|
private static UUID uuidAreaHR = UUID.fromString("83323e5b-8a62-4784-956a-5f21ddc853b9");
|
641 |
|
|
private static UUID uuidAreaHU = UUID.fromString("ab6985e7-e718-4bcb-bc84-55e563870998");
|
642 |
|
|
private static UUID uuidAreaIE = UUID.fromString("6a623016-2cd7-4391-8bc9-ae8af50060b4");
|
643 |
|
|
private static UUID uuidAreaIS = UUID.fromString("b8469350-7c87-4202-9cb1-5f0ad11ec89c");
|
644 |
|
|
private static UUID uuidAreaIT_ITA = UUID.fromString("43df04d6-90b4-4cf4-8dfc-f60ae921f92c");
|
645 |
|
|
private static UUID uuidAreaIT_SAR = UUID.fromString("f68d9695-238d-4684-901a-f4bbc24813ee");
|
646 |
|
|
private static UUID uuidAreaIT_SI = UUID.fromString("1889a571-d12a-48f1-a49f-112e60c699ef");
|
647 |
|
|
private static UUID uuidAreaLI = UUID.fromString("ebad24b5-559e-46c4-8b0d-87107e05169e");
|
648 |
|
|
private static UUID uuidAreaLT = UUID.fromString("d00df2a8-8d5d-4c36-b3a2-4afc9006be70");
|
649 |
|
|
private static UUID uuidAreaLU = UUID.fromString("65bbbb63-3351-4fda-a8f8-50557bc34e0d");
|
650 |
|
|
private static UUID uuidAreaLV = UUID.fromString("997d97ea-4678-4e01-9a81-518c09da7d7c");
|
651 |
|
|
private static UUID uuidAreaMC = UUID.fromString("0debabad-e7e2-4aad-b959-876d3d85a4b1");
|
652 |
|
|
private static UUID uuidAreaMD = UUID.fromString("7a4ffe59-f8d6-4a58-bb4e-449fbe8420b3");
|
653 |
|
|
private static UUID uuidAreaMK = UUID.fromString("40140714-6214-4338-bc45-f85455f7eaed");
|
654 |
|
|
private static UUID uuidAreaMT = UUID.fromString("b36c2f47-47d5-497f-9235-2faf0d9a6e6c");
|
655 |
|
|
private static UUID uuidAreaNAF = UUID.fromString("e3b2193d-e23a-47a7-9bf5-7f7eebe61afb");//x
|
656 |
|
|
private static UUID uuidAreaNEA = UUID.fromString("d6082e94-7289-45a3-a298-5cb730cfbd7f");//x
|
657 |
|
|
private static UUID uuidAreaNEO = UUID.fromString("7a530ae7-d070-49aa-8496-7b06c4ed735b");//x
|
658 |
|
|
private static UUID uuidAreaNL = UUID.fromString("7b74033f-ada3-4956-87b7-ec9bf0cb4c76");
|
659 |
|
|
private static UUID uuidAreaNO_NOR = UUID.fromString("11b26fc9-3da4-4323-8b03-e960e8b1c914");
|
660 |
|
|
private static UUID uuidAreaNO_SVA = UUID.fromString("9a3fe056-2011-4b02-a416-59de00eaf533");
|
661 |
|
|
private static UUID uuidAreaNRE = UUID.fromString("5e005e59-b313-4c5b-8702-c2f88317db25");//x
|
662 |
|
|
private static UUID uuidAreaORR = UUID.fromString("2047d0dd-12dc-4454-8344-07ad52fa0af0");//x
|
663 |
|
|
private static UUID uuidAreaPL = UUID.fromString("68edc557-dbed-494e-9549-6746f11fb904");
|
664 |
|
|
private static UUID uuidAreaPT_AZO = UUID.fromString("6f5e4eb5-83c8-4baf-99f2-cb6e25d8ac9d");
|
665 |
|
|
private static UUID uuidAreaPT_MDR = UUID.fromString("97bed937-f4ad-4b42-ba0c-8832816fa234");
|
666 |
|
|
private static UUID uuidAreaPT_POR = UUID.fromString("09107b85-2bdb-4534-a51c-8d02cdd71590");
|
667 |
|
|
private static UUID uuidAreaPT_SEL = UUID.fromString("e067287c-50c6-4e54-9859-91aa15aa289a");
|
668 |
|
|
private static UUID uuidAreaRO = UUID.fromString("de3e2ca8-d2ea-4c1f-8a19-a7a0b5daf39d");
|
669 |
|
|
private static UUID uuidAreaRU_FJL = UUID.fromString("2b79434b-df7d-4dc5-996f-1ca4227f6e0e");//x
|
670 |
|
|
private static UUID uuidAreaRU_KGD = UUID.fromString("227a661b-91de-489c-88ed-6b72f78481f0");
|
671 |
|
|
private static UUID uuidAreaRU_NOZ = UUID.fromString("2b26f68a-fdac-41ab-bce0-105b24d7eb26");//x
|
672 |
|
|
private static UUID uuidAreaRU_RUC = UUID.fromString("235748eb-9eef-48a8-9b9a-c4abd00b6244");
|
673 |
|
|
private static UUID uuidAreaRU_RUE = UUID.fromString("5ad5b07e-518f-44ee-ac96-c7608d93e757");
|
674 |
|
|
private static UUID uuidAreaRU_RUN = UUID.fromString("05d35653-9f67-442c-8d99-4a7ae68cf5d1");
|
675 |
|
|
private static UUID uuidAreaRU_RUS = UUID.fromString("98b00cf8-7bd6-4f44-885c-0927bbc1d456");
|
676 |
|
|
private static UUID uuidAreaRU_RUW = UUID.fromString("ae84bc08-957a-4c62-a828-1fb3fc2f0c3e");
|
677 |
|
|
private static UUID uuidAreaSE = UUID.fromString("8ff37027-4832-4ce1-9f25-e21eaf26299c");
|
678 |
|
|
private static UUID uuidAreaSI = UUID.fromString("0b76b448-5564-415c-bc18-727c37e62bf1");
|
679 |
|
|
private static UUID uuidAreaSK = UUID.fromString("e966cd7c-3e68-4153-887b-54920eb6eb47");
|
680 |
|
|
private static UUID uuidAreaSM = UUID.fromString("c40b8a71-c50c-4636-96de-be0bb48ed025");
|
681 |
|
|
private static UUID uuidAreaTR_TUE = UUID.fromString("807317b3-746b-4916-9441-d8086d0d1cb1");
|
682 |
|
|
private static UUID uuidAreaUA = UUID.fromString("2f80440d-cb03-499c-a829-c4ac4c6608d3");//x
|
683 |
|
|
private static UUID uuidAreaVA = UUID.fromString("cd256143-1b74-4a7d-998f-ba0a9c01bb3e");
|
684 |
|
|
private static UUID uuidAreaYU = UUID.fromString("cd80a852-1993-465a-b0e3-8c73218d4d90");
|
685 |
|
|
|
686 |
38e84b8e
|
Andreas Müller
|
|
687 |
|
|
// OccurrenceStatus
|
688 |
8d5e5e53
|
Andreas Müller
|
private static int STATUS_PRESENT = 1;
|
689 |
b639d1f2
|
Andreas Müller
|
public static int STATUS_ABSENT = 2;
|
690 |
|
|
public static int STATUS_NATIVE = 3;
|
691 |
|
|
public static int STATUS_INTRODUCED = 4;
|
692 |
|
|
public static int STATUS_NATURALISED = 5;
|
693 |
8d5e5e53
|
Andreas Müller
|
private static int STATUS_INVASIVE = 6;
|
694 |
b639d1f2
|
Andreas Müller
|
public static int STATUS_MANAGED = 7;
|
695 |
|
|
public static int STATUS_DOUBTFUL = 8;
|
696 |
38e84b8e
|
Andreas Müller
|
|
697 |
3221710a
|
Andreas Müller
|
private final Map<String, Integer> tdwgKeyMap = new HashMap<>();
|
698 |
|
|
private final Map<Integer, String> areaCacheMap = new HashMap<>();
|
699 |
|
|
private final Map<Integer, String> languageCacheMap = new HashMap<>();
|
700 |
7487f98f
|
Andreas Müller
|
private static final Map<String,Integer> languageCodeToKeyMap = new HashMap<>();
|
701 |
2f628c0c
|
Andreas Müller
|
|
702 |
3221710a
|
Andreas Müller
|
private final Map<Integer, String> featureCacheMap = new HashMap<>();
|
703 |
|
|
private final Map<Integer, String> nameStatusCacheMap = new HashMap<>();
|
704 |
|
|
private final Map<Integer, String> qualityStatusCacheMap = new HashMap<>();
|
705 |
|
|
private final Map<Integer, String> taxonStatusCacheMap = new HashMap<>();
|
706 |
|
|
private final Map<Integer, String> taxRelQualifierCacheMap = new HashMap<>();
|
707 |
|
|
private final Map<Integer, String> taxRelZooQualifierCacheMap = new HashMap<>();
|
708 |
|
|
private final Map<Integer, String> sourceUseCacheMap = new HashMap<>();
|
709 |
|
|
private final Map<Integer, String> fossilStatusCacheMap = new HashMap<>();
|
710 |
|
|
private final Map<Integer, String> typeDesigStatusCacheMap = new HashMap<>();
|
711 |
|
|
private final Map<Integer, String> sourceCategoryCacheMap = new HashMap<>();
|
712 |
|
|
private final Map<Integer, String> occurrenceStatusCacheMap = new HashMap<>();
|
713 |
|
|
private final Map<Integer, Map<Integer, String>> rankCacheMap = new HashMap<>();
|
714 |
|
|
private final Map<Integer, Map<Integer, String>> rankAbbrevCacheMap = new HashMap<>();
|
715 |
a124222b
|
Katja Luther
|
|
716 |
|
|
|
717 |
|
|
private final Source destination;
|
718 |
|
|
|
719 |
7ed5d11a
|
Andreas Müller
|
public PesiTransformer(Source destination) {
|
720 |
|
|
super();
|
721 |
|
|
this.destination = destination;
|
722 |
|
|
fillMaps();
|
723 |
|
|
}
|
724 |
|
|
|
725 |
|
|
private void fillMaps() {
|
726 |
|
|
try {
|
727 |
292c6d7f
|
Andreas Müller
|
//TDWG
|
728 |
73441bfb
|
Andreas Müller
|
String sql = " SELECT AreaId, AreaName, AreaTdwgCode, AreaEmCode, AreaFaEuCode FROM Area";
|
729 |
|
|
ResultSet rs = destination.getResultSet(sql);
|
730 |
7ed5d11a
|
Andreas Müller
|
while (rs.next()){
|
731 |
|
|
String tdwg = rs.getString("AreaTdwgCode");
|
732 |
|
|
Integer id = rs.getInt("AreaId");
|
733 |
|
|
String label = rs.getString("AreaName");
|
734 |
a124222b
|
Katja Luther
|
|
735 |
7ed5d11a
|
Andreas Müller
|
if (StringUtils.isNotBlank(tdwg)){
|
736 |
|
|
this.tdwgKeyMap.put(tdwg, id);
|
737 |
|
|
}
|
738 |
5312971d
|
Andreas Müller
|
this.areaCacheMap.put(id, label);
|
739 |
|
|
}
|
740 |
a124222b
|
Katja Luther
|
|
741 |
77b28474
|
Andreas Müller
|
//rankCache
|
742 |
a124222b
|
Katja Luther
|
sql = " SELECT KingdomId, RankId, Rank, RankAbbrev, Kingdom FROM Rank";
|
743 |
77b28474
|
Andreas Müller
|
rs = destination.getResultSet(sql);
|
744 |
|
|
while (rs.next()){
|
745 |
|
|
String rank = rs.getString("Rank");
|
746 |
|
|
String abbrev = rs.getString("RankAbbrev");
|
747 |
|
|
Integer rankId = rs.getInt("RankId");
|
748 |
|
|
Integer kingdomId = rs.getInt("KingdomId");
|
749 |
a124222b
|
Katja Luther
|
String kingdom = rs.getString("Kingdom");
|
750 |
|
|
|
751 |
77b28474
|
Andreas Müller
|
//rank str
|
752 |
|
|
Map<Integer, String> kingdomMap = rankCacheMap.get(kingdomId);
|
753 |
|
|
if (kingdomMap == null){
|
754 |
292c6d7f
|
Andreas Müller
|
kingdomMap = new HashMap<>();
|
755 |
77b28474
|
Andreas Müller
|
rankCacheMap.put(kingdomId, kingdomMap);
|
756 |
|
|
}
|
757 |
|
|
kingdomMap.put(rankId, rank);
|
758 |
a124222b
|
Katja Luther
|
|
759 |
|
|
if (rank.equals("Kingdom")){
|
760 |
|
|
pesiKingdomMap.put(kingdom, kingdomId);
|
761 |
|
|
}
|
762 |
|
|
|
763 |
77b28474
|
Andreas Müller
|
//rank abbrev
|
764 |
|
|
Map<Integer, String> kingdomAbbrevMap = rankAbbrevCacheMap.get(kingdomId);
|
765 |
|
|
if (kingdomAbbrevMap == null){
|
766 |
292c6d7f
|
Andreas Müller
|
kingdomAbbrevMap = new HashMap<>();
|
767 |
77b28474
|
Andreas Müller
|
rankAbbrevCacheMap.put(kingdomId, kingdomAbbrevMap);
|
768 |
|
|
}
|
769 |
|
|
if (StringUtils.isNotBlank(abbrev)){
|
770 |
|
|
kingdomAbbrevMap.put(rankId, abbrev);
|
771 |
|
|
}
|
772 |
|
|
}
|
773 |
a124222b
|
Katja Luther
|
|
774 |
5312971d
|
Andreas Müller
|
//languageCache
|
775 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(languageCacheMap, "Language");
|
776 |
4ce34990
|
Andreas Müller
|
|
777 |
5312971d
|
Andreas Müller
|
//feature / note category
|
778 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(featureCacheMap, "NoteCategory");
|
779 |
a124222b
|
Katja Luther
|
|
780 |
73441bfb
|
Andreas Müller
|
//nameStatusCache
|
781 |
3556e662
|
Andreas Müller
|
fillSingleMap(nameStatusCacheMap, "NameStatus", "NomStatus");
|
782 |
4ce34990
|
Andreas Müller
|
|
783 |
73441bfb
|
Andreas Müller
|
//qualityStatusCache
|
784 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(qualityStatusCacheMap, "QualityStatus");
|
785 |
4ce34990
|
Andreas Müller
|
|
786 |
c736e960
|
Andreas Müller
|
//taxonStatusCache
|
787 |
3556e662
|
Andreas Müller
|
fillSingleMap(taxonStatusCacheMap, "TaxonStatus", "Status");
|
788 |
a124222b
|
Katja Luther
|
|
789 |
4ce34990
|
Andreas Müller
|
//sourceUse
|
790 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(sourceUseCacheMap, "SourceUse");
|
791 |
4ce34990
|
Andreas Müller
|
|
792 |
|
|
//fossil status
|
793 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(fossilStatusCacheMap, "FossilStatus");
|
794 |
a124222b
|
Katja Luther
|
|
795 |
4ce34990
|
Andreas Müller
|
//fossil status
|
796 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(typeDesigStatusCacheMap, "FossilStatus");
|
797 |
e89c9ea1
|
Andreas Müller
|
|
798 |
|
|
//fossil status
|
799 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(occurrenceStatusCacheMap, "OccurrenceStatus");
|
800 |
a124222b
|
Katja Luther
|
|
801 |
4ce34990
|
Andreas Müller
|
//source category
|
802 |
8d5e5e53
|
Andreas Müller
|
fillSingleMap(sourceCategoryCacheMap, "SourceCategory", "Category", "SourceCategoryId");
|
803 |
a124222b
|
Katja Luther
|
|
804 |
c736e960
|
Andreas Müller
|
//RelTaxonQualifier
|
805 |
734c3289
|
Andreas Müller
|
sql = " SELECT QualifierId, Qualifier, ZoologQualifier FROM RelTaxonQualifier ";
|
806 |
96533ef2
|
Andreas Müller
|
rs = destination.getResultSet(sql);
|
807 |
|
|
while (rs.next()){
|
808 |
|
|
Integer key = rs.getInt("QualifierId");
|
809 |
|
|
String cache = rs.getString("Qualifier");
|
810 |
|
|
if (StringUtils.isNotBlank(cache)){
|
811 |
|
|
this.taxRelQualifierCacheMap.put(key, cache);
|
812 |
734c3289
|
Andreas Müller
|
}
|
813 |
|
|
String zoologCache = rs.getString("ZoologQualifier");
|
814 |
|
|
if (StringUtils.isNotBlank(zoologCache)){
|
815 |
|
|
this.taxRelZooQualifierCacheMap.put(key, zoologCache);
|
816 |
|
|
}
|
817 |
96533ef2
|
Andreas Müller
|
}
|
818 |
7487f98f
|
Andreas Müller
|
|
819 |
|
|
//language code map
|
820 |
|
|
sql = " SELECT LanguageId, Language, ISO639_1, ISO639_2, ISO639_3 FROM Language";
|
821 |
|
|
rs = destination.getResultSet(sql);
|
822 |
|
|
while (rs.next()){
|
823 |
|
|
Integer id = rs.getInt("LanguageId");
|
824 |
|
|
Integer oldId;
|
825 |
|
|
String iso639_1 = rs.getString("ISO639_1");
|
826 |
|
|
if (StringUtils.isNotBlank(iso639_1)){
|
827 |
03538949
|
Andreas Müller
|
oldId = languageCodeToKeyMap.put(iso639_1, id);
|
828 |
7487f98f
|
Andreas Müller
|
checkOldId(id, oldId, iso639_1);
|
829 |
|
|
}
|
830 |
|
|
String iso639_2 = rs.getString("ISO639_2");
|
831 |
|
|
if (StringUtils.isNotBlank(iso639_2)){
|
832 |
03538949
|
Andreas Müller
|
oldId = languageCodeToKeyMap.put(iso639_2, id);
|
833 |
7487f98f
|
Andreas Müller
|
checkOldId(id, oldId, iso639_1);
|
834 |
|
|
}
|
835 |
|
|
String iso639_3 = rs.getString("ISO639_3");
|
836 |
|
|
if (StringUtils.isNotBlank(iso639_3)){
|
837 |
03538949
|
Andreas Müller
|
oldId = languageCodeToKeyMap.put(iso639_3, id);
|
838 |
7487f98f
|
Andreas Müller
|
checkOldId(id, oldId, iso639_1);
|
839 |
|
|
}
|
840 |
|
|
|
841 |
|
|
}
|
842 |
a124222b
|
Katja Luther
|
rs = null;
|
843 |
292c6d7f
|
Andreas Müller
|
} catch (Exception e) {
|
844 |
|
|
logger.error("Exception when trying to read area map", e);
|
845 |
7ed5d11a
|
Andreas Müller
|
e.printStackTrace();
|
846 |
|
|
}
|
847 |
|
|
}
|
848 |
38e84b8e
|
Andreas Müller
|
|
849 |
7487f98f
|
Andreas Müller
|
private void checkOldId(Integer id, Integer oldId, String isoCode) {
|
850 |
|
|
if (oldId != null && !oldId.equals(id)){
|
851 |
|
|
logger.warn("Language code " + isoCode + " exists for >1 language IDs. This should not happen.");
|
852 |
|
|
}
|
853 |
|
|
}
|
854 |
|
|
|
855 |
|
|
private void fillSingleMap(Map<Integer, String> map, String tableName) throws SQLException {
|
856 |
4ce34990
|
Andreas Müller
|
fillSingleMap(map, tableName, tableName, tableName + "Id");
|
857 |
|
|
}
|
858 |
a124222b
|
Katja Luther
|
|
859 |
4ce34990
|
Andreas Müller
|
private void fillSingleMap(Map<Integer, String> map, String tableName, String attr) throws SQLException {
|
860 |
|
|
fillSingleMap(map, tableName, attr, attr + "Id");
|
861 |
|
|
}
|
862 |
a124222b
|
Katja Luther
|
|
863 |
4ce34990
|
Andreas Müller
|
private void fillSingleMap(Map<Integer, String> map, String tableName, String attr, String idAttr) throws SQLException {
|
864 |
|
|
String sql;
|
865 |
|
|
ResultSet rs;
|
866 |
|
|
sql = " SELECT %s, %s FROM %s ";
|
867 |
|
|
sql = String.format(sql, idAttr, attr, tableName);
|
868 |
|
|
rs = destination.getResultSet(sql);
|
869 |
|
|
while (rs.next()){
|
870 |
|
|
Integer key = rs.getInt(idAttr);
|
871 |
|
|
String cache = rs.getString(attr);
|
872 |
|
|
if (StringUtils.isNotBlank(cache)){
|
873 |
|
|
map.put(key, cache);
|
874 |
a124222b
|
Katja Luther
|
}
|
875 |
4ce34990
|
Andreas Müller
|
}
|
876 |
|
|
}
|
877 |
|
|
|
878 |
38e84b8e
|
Andreas Müller
|
/**
|
879 |
|
|
* Converts the databaseString to its abbreviation if its known.
|
880 |
|
|
* Otherwise the databaseString is returned.
|
881 |
|
|
* @param databaseString
|
882 |
|
|
* @return
|
883 |
|
|
*/
|
884 |
|
|
public static String databaseString2Abbreviation(String databaseString) {
|
885 |
|
|
String result = databaseString;
|
886 |
|
|
if (databaseString.equals("Fauna Europaea database")) {
|
887 |
|
|
result = "FaEu";
|
888 |
|
|
}
|
889 |
|
|
return result;
|
890 |
|
|
}
|
891 |
e89c9ea1
|
Andreas Müller
|
|
892 |
38e84b8e
|
Andreas Müller
|
/**
|
893 |
|
|
* Returns the OccurrenceStatusId for a given PresenceAbsenceTerm.
|
894 |
|
|
* @param term
|
895 |
|
|
* @return
|
896 |
a124222b
|
Katja Luther
|
* @throws UnknownCdmTypeException
|
897 |
38e84b8e
|
Andreas Müller
|
*/
|
898 |
07199bfc
|
Andreas Müller
|
public static Integer presenceAbsenceTerm2OccurrenceStatusId(PresenceAbsenceTerm term) {
|
899 |
38e84b8e
|
Andreas Müller
|
Integer result = null;
|
900 |
f98b108b
|
Andreas Müller
|
if (term == null){
|
901 |
|
|
return null;
|
902 |
7ed5d11a
|
Andreas Müller
|
//present
|
903 |
07199bfc
|
Andreas Müller
|
}else if (term.isInstanceOf(PresenceAbsenceTerm.class)) {
|
904 |
|
|
PresenceAbsenceTerm presenceTerm = CdmBase.deproxy(term, PresenceAbsenceTerm.class);
|
905 |
|
|
if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT()) ||
|
906 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED()) ||
|
907 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE())) {
|
908 |
38e84b8e
|
Andreas Müller
|
result = STATUS_PRESENT;
|
909 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.NATIVE())) {
|
910 |
38e84b8e
|
Andreas Müller
|
result = STATUS_NATIVE;
|
911 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED()) ||
|
912 |
7247a62e
|
Andreas Müller
|
presenceTerm.equals(PresenceAbsenceTerm.CASUAL()) ||
|
913 |
07199bfc
|
Andreas Müller
|
presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION())) {
|
914 |
38e84b8e
|
Andreas Müller
|
result = STATUS_INTRODUCED;
|
915 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())
|
916 |
7247a62e
|
Andreas Müller
|
|| presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())) {
|
917 |
38e84b8e
|
Andreas Müller
|
result = STATUS_NATURALISED;
|
918 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.INVASIVE())) {
|
919 |
38e84b8e
|
Andreas Müller
|
result = STATUS_INVASIVE;
|
920 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED())) {
|
921 |
38e84b8e
|
Andreas Müller
|
result = STATUS_MANAGED;
|
922 |
07199bfc
|
Andreas Müller
|
} else if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT_DOUBTFULLY())||
|
923 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE()) ||
|
924 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE() )) {
|
925 |
38e84b8e
|
Andreas Müller
|
result = STATUS_DOUBTFUL;
|
926 |
07199bfc
|
Andreas Müller
|
//absent
|
927 |
|
|
}else if (presenceTerm.equals(PresenceAbsenceTerm.ABSENT()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE()) ||
|
928 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()) || presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR()) ||
|
929 |
|
|
presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR() ) ) {
|
930 |
38e84b8e
|
Andreas Müller
|
result = STATUS_ABSENT;
|
931 |
|
|
} else {
|
932 |
07199bfc
|
Andreas Müller
|
logger.error("PresenceAbsenceTerm could not be translated to datawarehouse occurrence status id: " + presenceTerm.getLabel());
|
933 |
38e84b8e
|
Andreas Müller
|
}
|
934 |
|
|
}
|
935 |
|
|
return result;
|
936 |
|
|
}
|
937 |
a124222b
|
Katja Luther
|
|
938 |
62256e41
|
Andreas Müller
|
@Override
|
939 |
07199bfc
|
Andreas Müller
|
public String getCacheByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
|
940 |
e89c9ea1
|
Andreas Müller
|
if (status == null){
|
941 |
|
|
return null;
|
942 |
|
|
}else{
|
943 |
a124222b
|
Katja Luther
|
return this.occurrenceStatusCacheMap.get(getKeyByPresenceAbsenceTerm(status));
|
944 |
e89c9ea1
|
Andreas Müller
|
}
|
945 |
62256e41
|
Andreas Müller
|
}
|
946 |
a124222b
|
Katja Luther
|
|
947 |
62256e41
|
Andreas Müller
|
@Override
|
948 |
07199bfc
|
Andreas Müller
|
public Object getKeyByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
|
949 |
62256e41
|
Andreas Müller
|
return presenceAbsenceTerm2OccurrenceStatusId(status);
|
950 |
|
|
}
|
951 |
a124222b
|
Katja Luther
|
|
952 |
62256e41
|
Andreas Müller
|
@Override
|
953 |
5312971d
|
Andreas Müller
|
public String getCacheByNamedArea(NamedArea namedArea) throws UndefinedTransformerMethodException {
|
954 |
b9dcae47
|
Andreas Müller
|
NamedArea area = CdmBase.deproxy(namedArea);
|
955 |
5312971d
|
Andreas Müller
|
if (area == null){
|
956 |
38e84b8e
|
Andreas Müller
|
return null;
|
957 |
5312971d
|
Andreas Müller
|
}else{
|
958 |
a124222b
|
Katja Luther
|
return this.areaCacheMap.get(getKeyByNamedArea(area));
|
959 |
7ed5d11a
|
Andreas Müller
|
}
|
960 |
f98b108b
|
Andreas Müller
|
}
|
961 |
a124222b
|
Katja Luther
|
|
962 |
f98b108b
|
Andreas Müller
|
@Override
|
963 |
|
|
public Object getKeyByNamedArea(NamedArea area) throws UndefinedTransformerMethodException {
|
964 |
b9dcae47
|
Andreas Müller
|
NamedArea namedArea = CdmBase.deproxy(area);
|
965 |
7ed5d11a
|
Andreas Müller
|
|
966 |
|
|
if (area == null) {
|
967 |
|
|
return null;
|
968 |
|
|
//TDWG areas
|
969 |
bb38665e
|
Andreas Müller
|
} else if (area.getVocabulary().getUuid().equals(NamedArea.uuidTdwgAreaVocabulary)) {
|
970 |
7ed5d11a
|
Andreas Müller
|
String abbrevLabel = namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel();
|
971 |
|
|
Integer result = this.tdwgKeyMap.get(abbrevLabel);
|
972 |
|
|
if (result == null){
|
973 |
|
|
logger.warn("Unknown TDWGArea: " + area.getTitleCache());
|
974 |
|
|
}
|
975 |
|
|
return result;
|
976 |
bb38665e
|
Andreas Müller
|
//countries
|
977 |
|
|
}else if (namedArea.isInstanceOf(Country.class)){
|
978 |
|
|
if (namedArea.equals(Country.UKRAINE())) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
|
979 |
|
|
else if (namedArea.equals(Country.AZERBAIJANREPUBLICOF())) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
|
980 |
|
|
else if (namedArea.equals(Country.GEORGIA())) { return AREA_GEORGIA; }
|
981 |
|
|
else if (namedArea.equals(Country.RUSSIANFEDERATION())) { return AREA_THE_RUSSIAN_FEDERATION; }
|
982 |
|
|
else if (namedArea.equals(Country.UNITEDKINGDOMOFGREATBRITAINANDNORTHERNIRELAND())) { return AREA_UNITED_KINGDOM; }
|
983 |
|
|
else if (namedArea.equals(Country.DENMARKKINGDOMOF())) { return AREA_DENMARK_COUNTRY; }
|
984 |
|
|
else if (namedArea.equals(Country.TURKEYREPUBLICOF())) { return AREA_TURKEY_COUNTRY; }
|
985 |
7ed5d11a
|
Andreas Müller
|
else {
|
986 |
bb38665e
|
Andreas Müller
|
logger.warn("Unknown Country: " + area.getTitleCache());
|
987 |
7ed5d11a
|
Andreas Müller
|
}
|
988 |
6cb0766e
|
Andreas Müller
|
|
989 |
81bc4733
|
Andreas Müller
|
}else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedAreas)){
|
990 |
a124222b
|
Katja Luther
|
if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEM)) {
|
991 |
|
|
// logger.warn("E+M area not available in PESI");
|
992 |
7dfd3ab3
|
Andreas Müller
|
return null;
|
993 |
|
|
}
|
994 |
7d916881
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEUR)) { logger.warn("EUR area not available in PESI"); return null; }
|
995 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb)) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
|
996 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_A)) { return AREA_AZERBAIJAN; }
|
997 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_N)) { return AREA_NAKHICHEVAN; }
|
998 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE)) { return AREA_EAST_AEGEAN_ISLANDS; }
|
999 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_G)) { return AREA_GREEK_EAST_AEGEAN_ISLANDS; }
|
1000 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_T)) { return AREA_TURKISH_EAST_AEGEAN_ISLANDS; }
|
1001 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAg)) { return AREA_ALGERIA; }
|
1002 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAl)) { return AREA_ALBANIA; }
|
1003 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAr)) { return AREA_ARMENIA; }
|
1004 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu)) { return AREA_AUSTRIA_WITH_LIECHTENSTEIN; }
|
1005 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_A)) { return AREA_AUSTRIA; }
|
1006 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_L)) { return AREA_LIECHTENSTEIN; }
|
1007 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz)) { return AREA_AZORES; }
|
1008 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_C)) { return AREA_CORVO; }
|
1009 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_F)) { return AREA_FAIAL; }
|
1010 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_G)) { return AREA_GRACIOSA; }
|
1011 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_J)) { return AREA_SAO_JORGE; }
|
1012 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_L)) { return AREA_FLORES; }
|
1013 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_M)) { return AREA_SAO_MIGUEL; }
|
1014 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_P)) { return AREA_PICO; }
|
1015 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_S)) { return AREA_SANTA_MARIA; }
|
1016 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_T)) { return AREA_TERCEIRA; }
|
1017 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe)) { return AREA_BELGIUM_WITH_LUXEMBOURG; }
|
1018 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_B)) { return AREA_BELGIUM; }
|
1019 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_L)) { return AREA_LUXEMBOURG; }
|
1020 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBH)) { return AREA_BOSNIA_HERZEGOVINA; }
|
1021 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl)) { return AREA_BALEARES; }
|
1022 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_I)) { return AREA_IBIZA_WITH_FORMENTERA; }
|
1023 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_M)) { return AREA_MALLORCA; }
|
1024 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_N)) { return AREA_MENORCA; }
|
1025 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBr)) { return AREA_GREAT_BRITAIN; }
|
1026 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBt)) { return AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION; }
|
1027 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBu)) { return AREA_BULGARIA; }
|
1028 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBy)) { return AREA_BELARUS; }
|
1029 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa)) { return AREA_CANARY_ISLANDS; }
|
1030 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_C)) { return AREA_GRAN_CANARIA; }
|
1031 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_F)) { return AREA_FUERTEVENTURA_WITH_LOBOS; }
|
1032 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_G)) { return AREA_GOMERA; }
|
1033 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_H)) { return AREA_HIERRO; }
|
1034 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_L)) { return AREA_LANZAROTE_WITH_GRACIOSA; }
|
1035 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_P)) { return AREA_LA_PALMA; }
|
1036 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_T)) { return AREA_TENERIFE; }
|
1037 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCc)) { return AREA_CAUCASUS_REGION; }
|
1038 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCg)) { return AREA_MONTENEGRO; }
|
1039 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCo)) { return AREA_CORSE; }
|
1040 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCr)) { return AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS; }
|
1041 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCs)) { return AREA_CZECH_REPUBLIC; }
|
1042 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCt)) { return AREA_CROATIA; }
|
1043 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCy)) { return AREA_CYPRUS; }
|
1044 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCz)) { return AREA_FORMER_CZECHOSLOVAKIA; }
|
1045 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidDa)) { return AREA_DENMARK_WITH_BORNHOLM; }
|
1046 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEg)) { return AREA_EGYPT; }
|
1047 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEs)) { return AREA_ESTONIA; }
|
1048 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFa)) { return AREA_FAROE_ISLANDS; }
|
1049 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFe)) { return AREA_FINLAND_WITH_AHVENANMAA; }
|
1050 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa)) { return AREA_FRANCE; }
|
1051 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_C)) { return AREA_CHANNEL_ISLANDS; }
|
1052 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_F)) { return AREA_FRENCH_MAINLAND; }
|
1053 |
7dfd3ab3
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_M)) { return AREA_MONACO; }
|
1054 |
a124222b
|
Katja Luther
|
|
1055 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGe)) { return AREA_GERMANY; }
|
1056 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg)) { return AREA_GEORGIA; }
|
1057 |
a124222b
|
Katja Luther
|
|
1058 |
7dfd3ab3
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_G)) { return AREA_GEORGIA_G; }
|
1059 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_A)) { return AREA_ABKHAZIA; }
|
1060 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_D)) { return AREA_ADZARIA; }
|
1061 |
a124222b
|
Katja Luther
|
|
1062 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGr)) { return AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS; }
|
1063 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb)) { return AREA_IRELAND; }
|
1064 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_E)) { return AREA_REPUBLIC_OF_IRELAND; }
|
1065 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_N)) { return AREA_NORTHERN_IRELAND; }
|
1066 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHe)) { return AREA_SWITZERLAND; }
|
1067 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHo)) { return AREA_NETHERLANDS; }
|
1068 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs)) { return AREA_SPAIN; }
|
1069 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_A)) { return AREA_ANDORRA; }
|
1070 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_G)) { return AREA_GIBRALTAR; }
|
1071 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_S)) { return AREA_KINGDOM_OF_SPAIN; }
|
1072 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHu)) { return AREA_HUNGARY; }
|
1073 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIJ)) { return AREA_ISRAEL_JORDAN; }
|
1074 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIr)) { return AREA_ISRAEL; }
|
1075 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIs)) { return AREA_ICELAND; }
|
1076 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt)) { return AREA_ITALY; }
|
1077 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_I)) { return AREA_ITALIAN_MAINLAND; }
|
1078 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_S)) { return AREA_SAN_MARINO; }
|
1079 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJo)) { return AREA_JORDAN; }
|
1080 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJu)) { return AREA_FORMER_JUGOSLAVIA; }
|
1081 |
ce2d36db
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidKo)) { return AREA_KOSOVO; }
|
1082 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLa)) { return AREA_LATVIA; }
|
1083 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLe)) { return AREA_LEBANON; }
|
1084 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLi)) { return AREA_LIBYA; }
|
1085 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLS)) { return AREA_LEBANON_SYRIA; }
|
1086 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLt)) { return AREA_LITHUANIA; }
|
1087 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLu)) { return AREA_PORTUGUESE_MAINLAND; }
|
1088 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMa)) { return AREA_MOROCCO; }
|
1089 |
a2a0c1de
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd)) { return AREA_MADEIRA_ARCHIPELAGO; }
|
1090 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_D)) { return AREA_DESERTAS; }
|
1091 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_M)) { return AREA_MADEIRA; }
|
1092 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_P)) { return AREA_PORTO_SANTO; }
|
1093 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMk)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
|
1094 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMo)) { return AREA_MOLDOVA; }
|
1095 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidNo)) { return AREA_NORWEGIAN_MAINLAND; }
|
1096 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidPo)) { return AREA_POLAND; }
|
1097 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf)) { return AREA_THE_RUSSIAN_FEDERATION; }
|
1098 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_A)) { return AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND; }
|
1099 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_C)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
|
1100 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_CS)) { return AREA_NORTH_CAUCASUS; }
|
1101 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_E)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
|
1102 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_K)) { return AREA_KALININGRAD; }
|
1103 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_N)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
|
1104 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_NW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
|
1105 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_S)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
|
1106 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRm)) { return AREA_ROMANIA; }
|
1107 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs)) { return AREA_FORMER_USSR; }
|
1108 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_B)) { return AREA_RUSSIA_BALTIC; }
|
1109 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_C)) { return AREA_RUSSIA_CENTRAL; }
|
1110 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_E)) { return AREA_RUSSIA_SOUTHEAST; }
|
1111 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_K)) { return AREA_CRIMEA; }
|
1112 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_N)) { return AREA_RUSSIA_NORTHERN; }
|
1113 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_W)) { return AREA_RUSSIA_SOUTHWEST; }
|
1114 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSa)) { return AREA_SARDEGNA; }
|
1115 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSb)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
|
1116 |
ce2d36db
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSe)) { return AREA_SERBIA; }
|
1117 |
c810e72f
|
Andreas Müller
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSg)) { return AREA_SELVAGENS_ISLANDS; }
|
1118 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi)) { return AREA_SICILY_WITH_MALTA; }
|
1119 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_M)) { return AREA_MALTA; }
|
1120 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_S)) { return AREA_SICILY; }
|
1121 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSk)) { return AREA_SLOVAKIA; }
|
1122 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSl)) { return AREA_SLOVENIA; }
|
1123 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSM)) { return AREA_SERBIA_WITH_MONTENEGRO; }
|
1124 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSn)) { return AREA_SINAI; }
|
1125 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSr)) { return AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO; }
|
1126 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSu)) { return AREA_SWEDEN; }
|
1127 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSy)) { return AREA_SYRIA; }
|
1128 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTcs)) { return AREA_TRANSCAUCASUS; }
|
1129 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTn)) { return AREA_TUNISIA; }
|
1130 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu)) { return AREA_TURKEY; }
|
1131 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_A)) { return AREA_ASIATIC_TURKEY; }
|
1132 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_E)) { return AREA_EUROPEAN_TURKEY; }
|
1133 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
|
1134 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_K)) { return AREA_CRIMEA; }
|
1135 |
|
|
else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_U)) { return AREA_UKRAINE; }
|
1136 |
81bc4733
|
Andreas Müller
|
else {
|
1137 |
|
|
logger.warn("Unknown EuroMed distribution area: " + area.getTitleCache());
|
1138 |
|
|
}
|
1139 |
|
|
}else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedCommonNameAreas)){
|
1140 |
|
|
UUID uuidArea = namedArea.getUuid();
|
1141 |
|
|
if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAlbania)) { return AREA_ALBANIA; }
|
1142 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAndorra)) { return AREA_ANDORRA; }
|
1143 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameArmenia)) { return AREA_ARMENIA; }
|
1144 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAustria)) { return AREA_AUSTRIA; }
|
1145 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzerbaijan)) { return AREA_AZERBAIJAN; }
|
1146 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzores)) { return AREA_AZORES; }
|
1147 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBaleares)) { return AREA_BALEARES; }
|
1148 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelarus)) { return AREA_BELARUS; }
|
1149 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelgium)) { return AREA_BELGIUM; }
|
1150 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBulgaria)) { return AREA_BULGARIA; }
|
1151 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCanaryIs)) { return AREA_CANARY_ISLANDS; }
|
1152 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCorse)) { return AREA_CORSE; }
|
1153 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrete)) { return AREA_CRETE; }
|
1154 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrimea)) { return AREA_CRIMEA; }
|
1155 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCroatia)) { return AREA_CROATIA; }
|
1156 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCzechRepublic)) { return AREA_CZECH_REPUBLIC; }
|
1157 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameDenmark)) { return AREA_DENMARK_COUNTRY; } //??
|
1158 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEastAegeanIslands)) { return AREA_EAST_AEGEAN_ISLANDS; }
|
1159 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
|
1160 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
|
1161 |
9d857396
|
Andreas Müller
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFaroer)) { return AREA_FAROE_ISLANDS; }
|
1162 |
81bc4733
|
Andreas Müller
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinland)) { return AREA_FINLAND_WITH_AHVENANMAA; } //??
|
1163 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinlandWithAhvenanmaa)) { return AREA_FINLAND_WITH_AHVENANMAA; }
|
1164 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFrance)) { return AREA_FRANCE; }
|
1165 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGeorgia)) { return AREA_GEORGIA; }
|
1166 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGermany)) { return AREA_GERMANY; }
|
1167 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreatBritain)) { return AREA_GREAT_BRITAIN; }
|
1168 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreece)) { return AREA_GREECE_COUNTRY; } //??
|
1169 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameHungary)) { return AREA_HUNGARY; }
|
1170 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIbizaWithFormentera)) { return AREA_IBIZA_WITH_FORMENTERA; }
|
1171 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIceland)) { return AREA_ICELAND; }
|
1172 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIreland)) { return AREA_IRELAND; }
|
1173 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIsrael)) { return AREA_ISRAEL; }
|
1174 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameItaly)) { return AREA_ITALY; }
|
1175 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLaPalma)) { return AREA_LA_PALMA; }
|
1176 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLativa)) { return AREA_LATVIA; }
|
1177 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLebanon)) { return AREA_LEBANON; }
|
1178 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLibya)) { return AREA_LIBYA; }
|
1179 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLithuania)) { return AREA_LITHUANIA; }
|
1180 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMadeira)) { return AREA_MADEIRA; }
|
1181 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMallorca)) { return AREA_MALLORCA; }
|
1182 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMalta)) { return AREA_MALTA; }
|
1183 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMenorca)) { return AREA_MENORCA; }
|
1184 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMoldova)) { return AREA_MOLDOVA; }
|
1185 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMorocco)) { return AREA_MOROCCO; }
|
1186 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNetherlands)) { return AREA_NETHERLANDS; }
|
1187 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNorway)) { return AREA_NORWEGIAN_MAINLAND; }
|
1188 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePoland)) { return AREA_POLAND; }
|
1189 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePortugal)) { return AREA_PORTUGAL_COUNTRY; } //??
|
1190 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRomania)) { return AREA_ROMANIA; }
|
1191 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussiaCentral)) { return AREA_RUSSIA_CENTRAL; }
|
1192 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussianFederation)) { return AREA_THE_RUSSIAN_FEDERATION; }
|
1193 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSardegna)) { return AREA_SARDEGNA; }
|
1194 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSerbiaMontenegro)) { return AREA_SERBIA_WITH_MONTENEGRO; }
|
1195 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovakia)) { return AREA_SLOVAKIA; }
|
1196 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovenia)) { return AREA_SLOVENIA; }
|
1197 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSouthEuropeanRussia)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
|
1198 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSpain)) { return AREA_SPAIN; }
|
1199 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSweden)) { return AREA_SWEDEN; }
|
1200 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSwitzerland)) { return AREA_SWITZERLAND; }
|
1201 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSyria)) { return AREA_SYRIA; }
|
1202 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTenerife)) { return AREA_TENERIFE; }
|
1203 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTurkey)) { return AREA_TURKEY; } //??
|
1204 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameUkraine)) { return AREA_UKRAINE; } //??
|
1205 |
|
|
else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameWales)) { return AREA_WALES; }
|
1206 |
|
|
else {
|
1207 |
|
|
logger.warn("Unknown EuroMed common name area: " + area.getTitleCache());
|
1208 |
|
|
}
|
1209 |
a124222b
|
Katja Luther
|
|
1210 |
6cb0766e
|
Andreas Müller
|
}else if (area.getVocabulary().getUuid().equals(FaunaEuropaeaTransformer.uuidFauEuArea)){
|
1211 |
|
|
UUID uuidArea = namedArea.getUuid();
|
1212 |
|
|
if (uuidArea.equals(uuidAreaAD)) { return AREA_ANDORRA; }
|
1213 |
|
|
else if (uuidArea.equals(uuidAreaAFR)) { return AREA_AFRO_TROPICAL_REGION; }
|
1214 |
|
|
else if (uuidArea.equals(uuidAreaAL)) { return AREA_ALBANIA; }
|
1215 |
|
|
else if (uuidArea.equals(uuidAreaAT)) { return AREA_AUSTRIA; }
|
1216 |
|
|
else if (uuidArea.equals(uuidAreaAUS)) { return AREA_AUSTRALIAN_REGION; }
|
1217 |
|
|
else if (uuidArea.equals(uuidAreaBA)) { return AREA_BOSNIA_HERZEGOVINA; }
|
1218 |
|
|
else if (uuidArea.equals(uuidAreaBE)) { return AREA_BELGIUM; }
|
1219 |
|
|
else if (uuidArea.equals(uuidAreaBG)) { return AREA_BULGARIA; }
|
1220 |
|
|
else if (uuidArea.equals(uuidAreaBY)) { return AREA_BELARUS; }
|
1221 |
|
|
else if (uuidArea.equals(uuidAreaCH)) { return AREA_SWITZERLAND; }
|
1222 |
|
|
else if (uuidArea.equals(uuidAreaCY)) { return AREA_CYPRUS; }
|
1223 |
|
|
else if (uuidArea.equals(uuidAreaCZ)) { return AREA_CZECH_REPUBLIC; }
|
1224 |
|
|
else if (uuidArea.equals(uuidAreaDE)) { return AREA_GERMANY; }
|
1225 |
|
|
else if (uuidArea.equals(uuidAreaDK_DEN)) { return AREA_DENMARK_WITH_BORNHOLM; }
|
1226 |
|
|
else if (uuidArea.equals(uuidAreaDK_FOR)) { return AREA_FAROE_ISLANDS; }
|
1227 |
|
|
else if (uuidArea.equals(uuidAreaEE)) { return AREA_ESTONIA; }
|
1228 |
|
|
else if (uuidArea.equals(uuidAreaEPA)) { return AREA_EAST_PALAEARCTIC; }
|
1229 |
|
|
else if (uuidArea.equals(uuidAreaES_BAL)) { return AREA_BALEARES; }
|
1230 |
|
|
else if (uuidArea.equals(uuidAreaES_CNY)) { return AREA_CANARY_ISLANDS; }
|
1231 |
|
|
else if (uuidArea.equals(uuidAreaES_SPA)) { return AREA_KINGDOM_OF_SPAIN; }
|
1232 |
|
|
else if (uuidArea.equals(uuidAreaFI)) { return AREA_FINLAND_WITH_AHVENANMAA; }
|
1233 |
|
|
else if (uuidArea.equals(uuidAreaFR_COR)) { return AREA_CORSE; }
|
1234 |
|
|
else if (uuidArea.equals(uuidAreaFR_FRA)) { return AREA_FRENCH_MAINLAND; }
|
1235 |
|
|
else if (uuidArea.equals(uuidAreaGB_CI)) { return AREA_CHANNEL_ISLANDS; }
|
1236 |
|
|
else if (uuidArea.equals(uuidAreaGB_GI)) { return AREA_GIBRALTAR; }
|
1237 |
|
|
else if (uuidArea.equals(uuidAreaGB_GRB)) { return AREA_GREAT_BRITAIN; }
|
1238 |
|
|
else if (uuidArea.equals(uuidAreaGB_NI)) { return AREA_NORTHERN_IRELAND; }
|
1239 |
|
|
else if (uuidArea.equals(uuidAreaGR_AEG)) { return AREA_NORTH_AEGEAN_ISLANDS; }
|
1240 |
|
|
else if (uuidArea.equals(uuidAreaGR_CYC)) { return AREA_CYCLADES_ISLANDS; }
|
1241 |
|
|
else if (uuidArea.equals(uuidAreaGR_DOD)) { return AREA_DODECANESE_ISLANDS; }
|
1242 |
|
|
else if (uuidArea.equals(uuidAreaGR_KRI)) { return AREA_CRETE; }
|
1243 |
|
|
else if (uuidArea.equals(uuidAreaGR_GRC)) { return AREA_GREEK_MAINLAND; }
|
1244 |
|
|
else if (uuidArea.equals(uuidAreaHR)) { return AREA_CROATIA; }
|
1245 |
|
|
else if (uuidArea.equals(uuidAreaHU)) { return AREA_HUNGARY; }
|
1246 |
|
|
else if (uuidArea.equals(uuidAreaIE)) { return AREA_REPUBLIC_OF_IRELAND; }
|
1247 |
|
|
else if (uuidArea.equals(uuidAreaIS)) { return AREA_ICELAND; }
|
1248 |
|
|
else if (uuidArea.equals(uuidAreaIT_ITA)) { return AREA_ITALIAN_MAINLAND; }
|
1249 |
|
|
else if (uuidArea.equals(uuidAreaIT_SAR)) { return AREA_SARDEGNA; }
|
1250 |
|
|
else if (uuidArea.equals(uuidAreaIT_SI)) { return AREA_SICILY; }
|
1251 |
|
|
else if (uuidArea.equals(uuidAreaLI)) { return AREA_LIECHTENSTEIN; }
|
1252 |
|
|
else if (uuidArea.equals(uuidAreaLT)) { return AREA_LITHUANIA; }
|
1253 |
|
|
else if (uuidArea.equals(uuidAreaLU)) { return AREA_LUXEMBOURG; }
|
1254 |
|
|
else if (uuidArea.equals(uuidAreaLV)) { return AREA_LATVIA; }
|
1255 |
|
|
else if (uuidArea.equals(uuidAreaMC)) { return AREA_MONACO; }
|
1256 |
|
|
else if (uuidArea.equals(uuidAreaMD)) { return AREA_MOLDOVA; }
|
1257 |
|
|
else if (uuidArea.equals(uuidAreaMK)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
|
1258 |
|
|
else if (uuidArea.equals(uuidAreaMT)) { return AREA_MALTA; }
|
1259 |
|
|
else if (uuidArea.equals(uuidAreaNAF)) { return AREA_NORTHERN_AFRICA; }
|
1260 |
|
|
else if (uuidArea.equals(uuidAreaNEA)) { return AREA_NEARCTIC_REGION; }
|
1261 |
|
|
else if (uuidArea.equals(uuidAreaNEO)) { return AREA_NEOTROPICAL_REGION; }
|
1262 |
|
|
else if (uuidArea.equals(uuidAreaNL)) { return AREA_NETHERLANDS; }
|
1263 |
|
|
else if (uuidArea.equals(uuidAreaNO_NOR)) { return AREA_NORWEGIAN_MAINLAND; }
|
1264 |
|
|
else if (uuidArea.equals(uuidAreaNO_SVA)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
|
1265 |
|
|
else if (uuidArea.equals(uuidAreaNRE)) { return AREA_NEAR_EAST; }
|
1266 |
|
|
else if (uuidArea.equals(uuidAreaORR)) { return AREA_ORIENTAL_REGION; }
|
1267 |
|
|
else if (uuidArea.equals(uuidAreaPL)) { return AREA_POLAND; }
|
1268 |
|
|
else if (uuidArea.equals(uuidAreaPT_AZO)) { return AREA_AZORES; }
|
1269 |
|
|
else if (uuidArea.equals(uuidAreaPT_MDR)) { return AREA_MADEIRA; }
|
1270 |
|
|
else if (uuidArea.equals(uuidAreaPT_POR)) { return AREA_PORTUGUESE_MAINLAND; }
|
1271 |
|
|
else if (uuidArea.equals(uuidAreaPT_SEL)) { return AREA_SELVAGENS_ISLANDS; }
|
1272 |
|
|
else if (uuidArea.equals(uuidAreaRO)) { return AREA_ROMANIA; }
|
1273 |
|
|
else if (uuidArea.equals(uuidAreaRU_FJL)) { return AREA_FRANZ_JOSEF_LAND; }
|
1274 |
|
|
else if (uuidArea.equals(uuidAreaRU_KGD)) { return AREA_KALININGRAD; }
|
1275 |
|
|
else if (uuidArea.equals(uuidAreaRU_NOZ)) { return AREA_NOVAYA_ZEMLYA; }
|
1276 |
|
|
else if (uuidArea.equals(uuidAreaRU_RUC)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
|
1277 |
|
|
else if (uuidArea.equals(uuidAreaRU_RUE)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
|
1278 |
|
|
else if (uuidArea.equals(uuidAreaRU_RUN)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
|
1279 |
|
|
else if (uuidArea.equals(uuidAreaRU_RUS)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
|
1280 |
|
|
else if (uuidArea.equals(uuidAreaRU_RUW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
|
1281 |
|
|
else if (uuidArea.equals(uuidAreaSE)) { return AREA_SWEDEN; }
|
1282 |
|
|
else if (uuidArea.equals(uuidAreaSI)) { return AREA_SLOVENIA; }
|
1283 |
|
|
else if (uuidArea.equals(uuidAreaSK)) { return AREA_SLOVAKIA; }
|
1284 |
|
|
else if (uuidArea.equals(uuidAreaSM)) { return AREA_SAN_MARINO; }
|
1285 |
|
|
else if (uuidArea.equals(uuidAreaTR_TUE)) { return AREA_EUROPEAN_TURKEY; }
|
1286 |
|
|
else if (uuidArea.equals(uuidAreaUA)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
|
1287 |
|
|
else if (uuidArea.equals(uuidAreaVA)) { return AREA_VATICAN_CITY; }
|
1288 |
|
|
else if (uuidArea.equals(uuidAreaYU)) { return AREA_FORMER_JUGOSLAVIA; }
|
1289 |
a124222b
|
Katja Luther
|
|
1290 |
855ea64a
|
Andreas Müller
|
}else if (area.getVocabulary().getUuid().equals(ErmsTransformer.uuidVocErmsAreas)){
|
1291 |
62256e41
|
Andreas Müller
|
//ERMS
|
1292 |
6cb0766e
|
Andreas Müller
|
UUID uuidArea = namedArea.getUuid();
|
1293 |
|
|
if (uuidArea.equals(ErmsTransformer.uuidEuropeanMarineWaters)) { return AREA_EUROPEAN_MARINE_WATERS; }
|
1294 |
5afad693
|
Andreas Müller
|
else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MES") || /carefull: NPE!
|
1295 |
6cb0766e
|
Andreas Müller
|
(uuidArea.equals(ErmsTransformer.uuidMediterraneanSea))) { return AREA_MEDITERRANEAN_SEA; } // abbreviated label missing
|
1296 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidWhiteSea)) { return AREA_WHITE_SEA; }
|
1297 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorthSea)) { return AREA_NORTH_SEA; }
|
1298 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBalticSea)) { return AREA_BALTIC_SEA; }
|
1299 |
5afad693
|
Andreas Müller
|
else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("BLS") || /carefull: NPE!
|
1300 |
6cb0766e
|
Andreas Müller
|
(uuidArea.equals(ErmsTransformer.uuidBlackSea))) { return AREA_BLACK_SEA; } // abbreviated label missing
|
1301 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBarentsSea)) { return AREA_BARENTS_SEA; }
|
1302 |
5afad693
|
Andreas Müller
|
else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("CAS") || /carefull: NPE!
|
1303 |
6cb0766e
|
Andreas Müller
|
(uuidArea.equals(ErmsTransformer.uuidCaspianSea))) { return AREA_CASPIAN_SEA; } // abbreviated label missing
|
1304 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone)) { return AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE; }
|
1305 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBelgianExclusiveEconomicZone)) { return AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1306 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidFrenchExclusiveEconomicZone)) { return AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1307 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidEnglishChannel)) { return AREA_ENGLISH_CHANNEL; }
|
1308 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAdriaticSea)) { return AREA_ADRIATIC_SEA; }
|
1309 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBiscayBay)) { return AREA_BISCAY_BAY; }
|
1310 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidDutchExclusiveEconomicZone)) { return AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1311 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdomExclusiveEconomicZone)) { return AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE; }
|
1312 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1313 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidEgyptianExclusiveEconomicZone)) { return AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1314 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTirrenoSea)) { return AREA_TIRRENO_SEA; }
|
1315 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIcelandicExclusiveEconomicZone)) { return AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE; }
|
1316 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIrishExclusiveeconomicZone)) { return AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1317 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIrishSea)) { return AREA_IRISH_SEA; }
|
1318 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIsraeliExclusiveEconomicZone)){ return 218;}
|
1319 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidItalianExclusiveEconomicZone)) { return AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1320 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorwegianSea)) { return AREA_NORWEGIAN_SEA; }
|
1321 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMoroccanExclusiveEconomicZone)) { return AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1322 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorwegianExclusiveEconomicZone)) { return AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1323 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSkagerrak)) { return AREA_SKAGERRAK; }
|
1324 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTunisianExclusiveEconomicZone)) { return AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1325 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidWaddenSea)) { return AREA_WADDEN_SEA; }
|
1326 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBeltSea)) { return AREA_BELT_SEA; }
|
1327 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMarmaraSea)) { return AREA_MARMARA_SEA; }
|
1328 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSeaofAzov)) { return AREA_SEA_OF_AZOV; }
|
1329 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAegeanSea)) { return AREA_AEGEAN_SEA; }
|
1330 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBulgarianExclusiveEconomicZone)) { return AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1331 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSouthBalticproper)) { return AREA_SOUTH_BALTIC_PROPER; }
|
1332 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBalticProper)) { return AREA_BALTIC_PROPER; }
|
1333 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorthBalticproper)) { return AREA_NORTH_BALTIC_PROPER; }
|
1334 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidArchipelagoSea)) { return AREA_ARCHIPELAGO_SEA; }
|
1335 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBothnianSea)) { return AREA_BOTHNIAN_SEA; }
|
1336 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGermanExclusiveEconomicZone)) { return AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1337 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSwedishExclusiveEconomicZone)) { return AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1338 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidUkrainianExclusiveEconomicZone)) { return AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1339 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMadeiranExclusiveEconomicZone)) { return AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1340 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidLebaneseExclusiveEconomicZone)) { return AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE; }
|
1341 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZoneMediterraneanpart)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART; }
|
1342 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidEstonianExclusiveEconomicZone)) { return AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1343 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCroatianExclusiveEconomicZone)) { return AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE; }
|
1344 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBalearSea)) { return AREA_BALEAR_SEA; }
|
1345 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTurkishExclusiveEconomicZone)) { return AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1346 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidDanishExclusiveEconomicZone)) { return AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE; }
|
1347 |
|
|
|
1348 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAlboranSea)) { return 219; }
|
1349 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAlgeria)) { return 220; }
|
1350 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAngola)) { return 221; }
|
1351 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidAustralianExclusiveEconomicZone)) { return 222; }
|
1352 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBahamas)) { return 223; }
|
1353 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBalearicSea)) { return 224; }
|
1354 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBelgium)) { return 225; }
|
1355 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBelize)) { return 226; }
|
1356 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBrazil)) { return 227; }
|
1357 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidBulgaria)) { return 228; }
|
1358 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCanada)) { return 229; }
|
1359 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCapeVerde)) { return 230; }
|
1360 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCapeVerdeanExclusiveEconomicZone)) { return 231; }
|
1361 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCaribbeanSea)) { return 210; }
|
1362 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidChile)) { return 232; }
|
1363 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidColombia)) { return 233; }
|
1364 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCostaRica)) { return 234; }
|
1365 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCroatia)) { return 235; }
|
1366 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidCuba)) { return 236; }
|
1367 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidDenmark)) { return 292; }
|
1368 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidEgypt)) { return 237; }
|
1369 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidEstonia)) { return 238; }
|
1370 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidFaeroeExclusiveEconomicZone)) { return 239; }
|
1371 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidFrance)) { return 240; }
|
1372 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGhana)) { return 241; }
|
1373 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGreece)) { return 242; }
|
1374 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGreekExclusiveEconomicZone)) { return AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE; }
|
1375 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGulfOfBothnia)) { return 243; }
|
1376 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGulfOfFinland)) { return 244; }
|
1377 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGulfOfGuinea)) { return 245; }
|
1378 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGulfOfMexico)) { return 246; }
|
1379 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidGulfOfRiga)) { return 247; }
|
1380 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIceland)) { return 248; }
|
1381 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIonianSea)) { return 249; }
|
1382 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidIreland)) { return 250; }
|
1383 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidItaly)) { return 251; }
|
1384 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidJamaica)) { return 252; }
|
1385 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidKattegat)) { return 253; }
|
1386 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidLevantineSea)) { return 254; }
|
1387 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidLigurianSea)) { return 255; }
|
1388 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMalteseExclusiveEconomicZone)) { return 256; }
|
1389 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMauritanianExclusiveEconomicZone)) { return 257; }
|
1390 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_EasternBasin)) { return 258; }
|
1391 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_WesternBasin)) { return 259; }
|
1392 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMexico)) { return 260; }
|
1393 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidMorocco)) { return 261; }
|
1394 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNetherlands)) { return 262; }
|
1395 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNewZealand)) { return 263; }
|
1396 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNewZealandExclusiveEconomicZone)) { return 264; }
|
1397 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorthAtlanticOcean)) { return 265; }
|
1398 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidNorway)) { return 266; }
|
1399 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPanama)) { return 267; }
|
1400 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPanamanianExclusiveEconomicZone)) { return 268; }
|
1401 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPolishExclusiveEconomicZone)) { return 216; }
|
1402 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPortugal)) { return 269; }
|
1403 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Azores)) { return 270; }
|
1404 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Madeira)) { return 271; }
|
1405 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidRedSea)) { return 272; }
|
1406 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidRussianExclusiveEconomicZone)) { return 217; }
|
1407 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSeaOfMarmara)) { return 273; }
|
1408 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSenegaleseExclusiveEconomicZone)) { return 274; }
|
1409 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSingapore)) { return 275; }
|
1410 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSlovenianExclusiveEconomicZone)) { return 276; }
|
1411 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSouthAfrica)) { return 277; }
|
1412 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSouthAfricanExclusiveEconomicZone)) { return 278; }
|
1413 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSouthChinaSea)) { return 279; }
|
1414 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSpain)) { return 280; }
|
1415 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone_CanaryIslands)) { return 281; }
|
1416 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSriLankanExclusiveEconomicZone)) { return 282; }
|
1417 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidStraitOfGibraltar)) { return 283; }
|
1418 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidSweden)) { return 284; }
|
1419 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTunisia)) { return 285; }
|
1420 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTurkey)) { return 286; }
|
1421 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidTyrrhenianSea)) { return 287; }
|
1422 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdom)) { return 288; }
|
1423 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidUnitedStates)) { return 291; }
|
1424 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidUnitedStatesExclusiveEconomicZone_Alaska)) { return 289; }
|
1425 |
|
|
else if (uuidArea.equals(ErmsTransformer.uuidVenezuela)) { return 290; }
|
1426 |
fa27ce80
|
Andreas Müller
|
|
1427 |
38e84b8e
|
Andreas Müller
|
else {
|
1428 |
855ea64a
|
Andreas Müller
|
logger.warn("Unknown ERMS Area: " + area.getTitleCache());
|
1429 |
38e84b8e
|
Andreas Müller
|
}
|
1430 |
e3892691
|
Andreas Müller
|
|
1431 |
855ea64a
|
Andreas Müller
|
} else {
|
1432 |
|
|
logger.warn("Unknown NamedArea Area not in a known vocabulary: " + area.getTitleCache());
|
1433 |
|
|
}
|
1434 |
38e84b8e
|
Andreas Müller
|
return null;
|
1435 |
|
|
}
|
1436 |
a124222b
|
Katja Luther
|
|
1437 |
38e84b8e
|
Andreas Müller
|
|
1438 |
|
|
/**
|
1439 |
|
|
* Returns the PESI SourceUseId for a given CDM sourceUseId.
|
1440 |
|
|
* @param sourceUseId
|
1441 |
|
|
* @return
|
1442 |
|
|
*/
|
1443 |
|
|
public static Integer sourceUseIdSourceUseId(Integer sourceUseId) {
|
1444 |
|
|
// TODO: CDM sourceUseId and PESI sourceUseId are equal for now.
|
1445 |
|
|
Integer result = null;
|
1446 |
|
|
switch (sourceUseId) {
|
1447 |
|
|
case 3: return ADDITIONAL_SOURCE;
|
1448 |
|
|
case 4: return SOURCE_OF_SYNONYMY;
|
1449 |
|
|
case 8: return NOMENCLATURAL_REFERENCE;
|
1450 |
|
|
}
|
1451 |
|
|
return result;
|
1452 |
|
|
}
|
1453 |
5312971d
|
Andreas Müller
|
|
1454 |
7ed5d11a
|
Andreas Müller
|
@Override
|
1455 |
|
|
public Object getKeyByLanguage(Language language) throws UndefinedTransformerMethodException {
|
1456 |
|
|
return language2LanguageId(language);
|
1457 |
|
|
}
|
1458 |
|
|
|
1459 |
|
|
@Override
|
1460 |
|
|
public String getCacheByLanguage(Language language) throws UndefinedTransformerMethodException {
|
1461 |
5312971d
|
Andreas Müller
|
if (language == null){
|
1462 |
|
|
return null;
|
1463 |
|
|
}else{
|
1464 |
a124222b
|
Katja Luther
|
return this.languageCacheMap.get(getKeyByLanguage(language));
|
1465 |
5312971d
|
Andreas Müller
|
}
|
1466 |
7ed5d11a
|
Andreas Müller
|
}
|
1467 |
|
|
|
1468 |
38e84b8e
|
Andreas Müller
|
/**
|
1469 |
|
|
* Returns the identifier of the given Language.
|
1470 |
|
|
*/
|
1471 |
|
|
public static Integer language2LanguageId(Language language) {
|
1472 |
|
|
if (language == null ) {
|
1473 |
|
|
return null;
|
1474 |
|
|
}
|
1475 |
7487f98f
|
Andreas Müller
|
Integer result;
|
1476 |
|
|
if ((result = languageCodeToKeyMap.get(language.getIso639_1())) != null){
|
1477 |
|
|
return result;
|
1478 |
|
|
}else if ((result = languageCodeToKeyMap.get(language.getIdInVocabulary())) != null){
|
1479 |
|
|
return result;
|
1480 |
9d857396
|
Andreas Müller
|
//Languages without ISO identifier
|
1481 |
|
|
}else if (language.getUuid().equals(BerlinModelTransformer.uuidLangValencian)){return LANG_VALENCIAN;
|
1482 |
|
|
}else if (language.getUuid().equals(BerlinModelTransformer.uuidLangHighAragonese)){return LANG_HIGH_ARAGONES;
|
1483 |
|
|
}else if (language.getUuid().equals(BerlinModelTransformer.uuidLangMajorcan)){return LANG_MAJORCAN;
|
1484 |
6cb0766e
|
Andreas Müller
|
//FE wrong mapping in FE, Dutch_Middle should probably be Dutch
|
1485 |
|
|
}else if (language.equals(Language.DUTCH_MIDDLE())){return LANG_DUTCH;
|
1486 |
a2a0c1de
|
Andreas Müller
|
//some common names from ILDIS have no defined language
|
1487 |
|
|
}else if (language.equals(Language.UNKNOWN_LANGUAGE())){return LANG_UNKNOWN;
|
1488 |
|
|
} else {
|
1489 |
7487f98f
|
Andreas Müller
|
logger.warn("Unknown Language: " + language.getTitleCache());
|
1490 |
38e84b8e
|
Andreas Müller
|
return null;
|
1491 |
|
|
}
|
1492 |
|
|
}
|
1493 |
a124222b
|
Katja Luther
|
|
1494 |
38e84b8e
|
Andreas Müller
|
/**
|
1495 |
|
|
* Returns the NodeCategoryCache for a given TextData.
|
1496 |
|
|
*/
|
1497 |
a124222b
|
Katja Luther
|
@Override
|
1498 |
|
|
public String getCacheByFeature(Feature feature) {
|
1499 |
5312971d
|
Andreas Müller
|
if (feature == null){
|
1500 |
38e84b8e
|
Andreas Müller
|
return null;
|
1501 |
5312971d
|
Andreas Müller
|
}else{
|
1502 |
a124222b
|
Katja Luther
|
return this.featureCacheMap.get(feature2NoteCategoryFk(feature));
|
1503 |
38e84b8e
|
Andreas Müller
|
}
|
1504 |
|
|
}
|
1505 |
|
|
|
1506 |
|
|
/**
|
1507 |
|
|
* Returns the NodeCategoryFk for a given TextData.
|
1508 |
|
|
*/
|
1509 |
5312971d
|
Andreas Müller
|
public static Integer feature2NoteCategoryFk(Feature feature) {
|
1510 |
38e84b8e
|
Andreas Müller
|
if (feature == null) {
|
1511 |
|
|
return null;
|
1512 |
|
|
}
|
1513 |
|
|
|
1514 |
|
|
if (feature.equals(Feature.DESCRIPTION())) {
|
1515 |
|
|
return NoteCategory_description;
|
1516 |
|
|
} else if (feature.equals(Feature.ECOLOGY())) {
|
1517 |
|
|
return NoteCategory_ecology;
|
1518 |
|
|
} else if (feature.equals(Feature.PHENOLOGY())) {
|
1519 |
|
|
return NoteCategory_phenology;
|
1520 |
c32dfb15
|
Andreas Müller
|
} else if (feature.equals(Feature.DIAGNOSIS())) {
|
1521 |
|
|
return NoteCategory_Diagnosis;
|
1522 |
|
|
} else if (feature.equals(Feature.COMMON_NAME())) {
|
1523 |
38e84b8e
|
Andreas Müller
|
return NoteCategory_Common_names;
|
1524 |
|
|
} else if (feature.equals(Feature.OCCURRENCE())) {
|
1525 |
|
|
return NoteCategory_Occurrence;
|
1526 |
08439504
|
Andreas Müller
|
} else if (feature.equals(Feature.DISTRIBUTION())) {
|
1527 |
|
|
return NoteCategory_Distribution;
|
1528 |
c32dfb15
|
Andreas Müller
|
} else if (feature.equals(Feature.ETYMOLOGY())) {
|
1529 |
|
|
return NoteCategory_Etymology;
|
1530 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidAcknowledgments)){
|
1531 |
|
|
return NoteCategory_Acknowledgments;
|
1532 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidAdditionalinformation)) {
|
1533 |
c32dfb15
|
Andreas Müller
|
return NoteCategory_Additional_information;
|
1534 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidAlienSpecies)) {
|
1535 |
|
|
return NoteCategory_Alien_Species;
|
1536 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidAuthority)) {
|
1537 |
|
|
return NoteCategory_Authority;
|
1538 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidDepthRange)) {
|
1539 |
|
|
return NoteCategory_Depth_Range;
|
1540 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidBiology)) {
|
1541 |
|
|
return NoteCategory_Biology;
|
1542 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidClassification)) {
|
1543 |
c32dfb15
|
Andreas Müller
|
return NoteCategory_Classification;
|
1544 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidDiet)) {
|
1545 |
|
|
return NoteCategory_Diet;
|
1546 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidDimensions)) {
|
1547 |
|
|
return NoteCategory_Dimensions;
|
1548 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidEditorsComment)) {
|
1549 |
|
|
return NoteCategory_Editors_Comment;
|
1550 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidEnvironment)) {
|
1551 |
c32dfb15
|
Andreas Müller
|
return NoteCategory_Environment;
|
1552 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidFossilRange)) {
|
1553 |
|
|
return NoteCategory_Fossil_Range;
|
1554 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidGrammaticalGender)) {
|
1555 |
|
|
return NoteCategory_Grammatical_Gender;
|
1556 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidHabitat)) {
|
1557 |
c32dfb15
|
Andreas Müller
|
return NoteCategory_Habitat;
|
1558 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidHomonymy)) {
|
1559 |
|
|
return NoteCategory_Homonymy;
|
1560 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidIdentification)) {
|
1561 |
|
|
return NoteCategory_Identification;
|
1562 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidIntroducedSpeciesRemark)) {
|
1563 |
|
|
return NoteCategory_Introduced_Species_Remark;
|
1564 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidMorphology)) {
|
1565 |
c32dfb15
|
Andreas Müller
|
return NoteCategory_Morphology;
|
1566 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidNewCombination)) {
|
1567 |
|
|
return NoteCategory_New_Combination;
|
1568 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidNomenclature)) {
|
1569 |
|
|
return NoteCategory_Nomenclature;
|
1570 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidNote)){
|
1571 |
|
|
return NoteCategory_Note;
|
1572 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalCombination)) {
|
1573 |
|
|
return NoteCategory_Original_Combination;
|
1574 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalDescription)) {
|
1575 |
|
|
return NoteCategory_Original_Description;
|
1576 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalpublication)) {
|
1577 |
|
|
return NoteCategory_Original_publication;
|
1578 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidPublicationdate)) {
|
1579 |
|
|
return NoteCategory_Publication_date;
|
1580 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidRank)) {
|
1581 |
|
|
return NoteCategory_Rank;
|
1582 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidRemark)) {
|
1583 |
|
|
return NoteCategory_Remark;
|
1584 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidReproduction)) {
|
1585 |
|
|
return NoteCategory_Reproduction;
|
1586 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidSpelling)) {
|
1587 |
|
|
return NoteCategory_Spelling;
|
1588 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidSpecimen)) {
|
1589 |
|
|
return NoteCategory_Specimen;
|
1590 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidStatus)){
|
1591 |
|
|
return NoteCategory_Status;
|
1592 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidSynonymy)) {
|
1593 |
|
|
return NoteCategory_Synonymy;
|
1594 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidSyntype)) {
|
1595 |
|
|
return NoteCategory_Syntype;
|
1596 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidSystematics)) {
|
1597 |
|
|
return NoteCategory_Systematics;
|
1598 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemarks)) {
|
1599 |
|
|
return NoteCategory_Taxonomic_Remarks;
|
1600 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomy)) {
|
1601 |
|
|
return NoteCategory_Taxonomy;
|
1602 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicstatus)) {
|
1603 |
|
|
return NoteCategory_Taxonomic_status;
|
1604 |
c32dfb15
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTypelocality)) {
|
1605 |
|
|
return NoteCategory_Type_locality;
|
1606 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeMaterial)) {
|
1607 |
|
|
return NoteCategory_Type_Material;
|
1608 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeSpecimen)) {
|
1609 |
|
|
return NoteCategory_Type_Specimen;
|
1610 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTypespecies)) {
|
1611 |
|
|
return NoteCategory_Type_species;
|
1612 |
38e84b8e
|
Andreas Müller
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemark)) {
|
1613 |
|
|
return NoteCategory_Taxonomic_Remark;
|
1614 |
|
|
} else if (feature.getUuid().equals(ErmsTransformer.uuidValidity)) {
|
1615 |
|
|
return NoteCategory_Validity;
|
1616 |
c32dfb15
|
Andreas Müller
|
|
1617 |
b91853a7
|
Andreas Müller
|
// } else if (feature.getUuid().equals(ErmsTransformer.uuidSourceOfSynonymy)) {
|
1618 |
|
|
// logger.debug("Source of synonymy not yet handled");
|
1619 |
|
|
// return null;
|
1620 |
0c392a47
|
Andreas Müller
|
} else if (feature.equals(Feature.CITATION())) {
|
1621 |
|
|
return null; //citations are handled differently
|
1622 |
a1c35216
|
Andreas Müller
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureMaps)){
|
1623 |
eea9683d
|
Andreas Müller
|
return NoteCategory_Link_to_maps;
|
1624 |
5312971d
|
Andreas Müller
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureUse)){
|
1625 |
|
|
return NoteCategory_Use;
|
1626 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureComments)){
|
1627 |
|
|
return NoteCategory_Comments;
|
1628 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureConservationStatus)){
|
1629 |
|
|
return NoteCategory_Conservation_Status;
|
1630 |
a124222b
|
Katja Luther
|
|
1631 |
eea9683d
|
Andreas Müller
|
//E+M
|
1632 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrEM)){
|
1633 |
|
|
return NoteCategory_general_distribution_euromed;
|
1634 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrWorld)){
|
1635 |
|
|
return NoteCategory_general_distribution_world;
|
1636 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorBrackets)){
|
1637 |
|
|
return NoteCategory_Editor_Brackets;
|
1638 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorParenthesis)){
|
1639 |
|
|
return NoteCategory_Editor_Parenthesis;
|
1640 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureInedited)){
|
1641 |
|
|
return NoteCategory_Inedited;
|
1642 |
|
|
} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureCommentsEditing)){
|
1643 |
|
|
return NoteCategory_Comments_on_editing_process;
|
1644 |
a124222b
|
Katja Luther
|
|
1645 |
38e84b8e
|
Andreas Müller
|
}else{
|
1646 |
0c392a47
|
Andreas Müller
|
logger.warn("Unhandled Feature: " + feature.getTitleCache());
|
1647 |
38e84b8e
|
Andreas Müller
|
return null;
|
1648 |
|
|
}
|
1649 |
|
|
}
|
1650 |
|
|
|
1651 |
|
|
/**
|
1652 |
|
|
* Returns the string representation for a given rank.
|
1653 |
|
|
*/
|
1654 |
adbd2aac
|
Andreas Müller
|
public String getCacheByRankAndKingdom(Rank rank, Integer pesiKingdomId) {
|
1655 |
d7f95f72
|
Andreas Müller
|
if (rank == null){
|
1656 |
38e84b8e
|
Andreas Müller
|
return null;
|
1657 |
d7f95f72
|
Andreas Müller
|
}else if (pesiKingdomId == null && rank.equals(Rank.DOMAIN())){ //might be Superdomain in future
|
1658 |
|
|
return this.rankCacheMap.get(0).get(0);
|
1659 |
77b28474
|
Andreas Müller
|
}else{
|
1660 |
b2956a5e
|
Andreas Müller
|
Map<Integer, String> rankMap = this.rankCacheMap.get(pesiKingdomId);
|
1661 |
|
|
if (rankMap != null){
|
1662 |
|
|
return rankMap.get(rank2RankId(rank, pesiKingdomId));
|
1663 |
|
|
}else{
|
1664 |
|
|
logger.warn("RankCacheMap is null for " + pesiKingdomId);
|
1665 |
|
|
return null;
|
1666 |
|
|
}
|
1667 |
38e84b8e
|
Andreas Müller
|
}
|
1668 |
|
|
}
|
1669 |
a124222b
|
Katja Luther
|
|
1670 |
38e84b8e
|
Andreas Müller
|
/**
|
1671 |
|
|
* Returns the identifier of a PESI specific kingdom for a given CDM nomenclatural code.
|
1672 |
|
|
* @param nomenclaturalCode
|
1673 |
b91853a7
|
Andreas Müller
|
* @return KINGDOM_ANIMALIA for NomenclaturalCode.ICZN, KINGDOM_PLANTAE for NomenclaturalCode.ICNAFP
|
1674 |
38e84b8e
|
Andreas Müller
|
*/
|
1675 |
3deab5ac
|
Andreas Müller
|
public static Integer nomenclaturalCode2Kingdom(NomenclaturalCode nomenclaturalCode) {
|
1676 |
38e84b8e
|
Andreas Müller
|
Integer result = null;
|
1677 |
b91853a7
|
Andreas Müller
|
// TODO: This needs to be refined. For now we differentiate between animalia, plantae and bacteria only.
|
1678 |
38e84b8e
|
Andreas Müller
|
if (nomenclaturalCode.equals(NomenclaturalCode.ICZN)) {
|
1679 |
|
|
result = KINGDOM_ANIMALIA;
|
1680 |
bb38665e
|
Andreas Müller
|
} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNAFP)) {
|
1681 |
38e84b8e
|
Andreas Müller
|
result = KINGDOM_PLANTAE;
|
1682 |
|
|
} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNB)) {
|
1683 |
|
|
result = KINGDOM_BACTERIA;
|
1684 |
|
|
// } else if (nomenclaturalCode.equals(NomenclaturalCode.)) { // Biota
|
1685 |
a124222b
|
Katja Luther
|
// result =
|
1686 |
38e84b8e
|
Andreas Müller
|
} else {
|
1687 |
d7f95f72
|
Andreas Müller
|
logger.error("NomenclaturalCode not yet considered: " + nomenclaturalCode.getUuid() + " (" + nomenclaturalCode.getTitleCache() + ")");
|
1688 |
38e84b8e
|
Andreas Müller
|
}
|
1689 |
|
|
return result;
|
1690 |
|
|
}
|
1691 |
a124222b
|
Katja Luther
|
|
1692 |
38e84b8e
|
Andreas Müller
|
/**
|
1693 |
|
|
* Returns the RankId for a Rank.
|
1694 |
|
|
* @param rank
|
1695 |
|
|
* @return
|
1696 |
|
|
*/
|
1697 |
|
|
public static Integer rank2RankId (Rank rank, Integer pesiKingdomId) {
|
1698 |
|
|
Integer result = null;
|
1699 |
|
|
if (rank == null) {
|
1700 |
|
|
return null;
|
1701 |
03241a1f
|
Andreas Müller
|
}else if (rank.equals(Rank.DOMAIN())){
|
1702 |
|
|
return KINGDOM_NULL;
|
1703 |
787b3ec2
|
Andreas Müller
|
}else if (rank.equals(Rank.KINGDOM())) {
|
1704 |
|
|
result = Kingdom;
|
1705 |
|
|
}else if (rank.equals(Rank.SUBKINGDOM())) {
|
1706 |
|
|
result = Subkingdom;
|
1707 |
|
|
} else if (rank.equals(Rank.PHYLUM())) {
|
1708 |
|
|
result = Phylum;
|
1709 |
|
|
}else if (rank.equals(Rank.DIVISION())) { //same as Phylum
|
1710 |
|
|
result = Division;
|
1711 |
|
|
}else if (rank.equals(Rank.SUBPHYLUM())) {
|
1712 |
|
|
result = Subphylum;
|
1713 |
|
|
}else if (rank.equals(Rank.SUBDIVISION())) { //same as Subphylum
|
1714 |
|
|
result = Subdivision;
|
1715 |
|
|
}else if (rank.equals(Rank.CLASS())) {
|
1716 |
|
|
result = Class;
|
1717 |
|
|
} else if (rank.equals(Rank.SUBCLASS())) {
|
1718 |
|
|
result = Subclass;
|
1719 |
|
|
} else if (rank.equals(Rank.ORDER())) {
|
1720 |
|
|
result = Order;
|
1721 |
|
|
} else if (rank.equals(Rank.SUBORDER())) {
|
1722 |
|
|
result = Suborder;
|
1723 |
|
|
} else if (rank.equals(Rank.FAMILY())) {
|
1724 |
|
|
result = Family;
|
1725 |
|
|
} else if (rank.equals(Rank.SUBFAMILY())) {
|
1726 |
|
|
result = Subfamily;
|
1727 |
|
|
} else if (rank.equals(Rank.TRIBE())) {
|
1728 |
|
|
result = Tribe;
|
1729 |
|
|
} else if (rank.equals(Rank.SUBTRIBE())) {
|
1730 |
|
|
result = Subtribe;
|
1731 |
|
|
} else if (rank.equals(Rank.GENUS())) {
|
1732 |
|
|
result = Genus;
|
1733 |
|
|
} else if (rank.equals(Rank.SUBGENUS())) {
|
1734 |
|
|
result = Subgenus;
|
1735 |
|
|
} else if (rank.equals(Rank.SPECIES())) {
|
1736 |
|
|
result = Species;
|
1737 |
|
|
} else if (rank.equals(Rank.SUBSPECIES())) {
|
1738 |
|
|
result = Subspecies;
|
1739 |
|
|
} else if (rank.equals(Rank.VARIETY())) {
|
1740 |
|
|
result = Variety;
|
1741 |
|
|
} else if (rank.equals(Rank.FORM())) {
|
1742 |
|
|
result = Forma;
|
1743 |
|
|
} else
|
1744 |
a124222b
|
Katja Luther
|
|
1745 |
38e84b8e
|
Andreas Müller
|
// We differentiate between Animalia and Plantae only for now.
|
1746 |
|
|
if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_ANIMALIA) {
|
1747 |
787b3ec2
|
Andreas Müller
|
if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
|
1748 |
|
|
} else if (rank.equals(Rank.SUPERPHYLUM())) {result = Superphylum;
|
1749 |
|
|
} else if (rank.equals(Rank.INFRAPHYLUM())) {result = Infraphylum;
|
1750 |
|
|
} else if (rank.equals(Rank.SUPERCLASS())) {result = Superclass;
|
1751 |
|
|
} else if (rank.equals(Rank.INFRACLASS())) {result = Infraclass;
|
1752 |
|
|
} else if (rank.getUuid().equals(ErmsTransformer.uuidRankSubterclass)) {result = Subterclass;
|
1753 |
|
|
} else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
|
1754 |
|
|
} else if (rank.equals(Rank.INFRAORDER())) {result = Infraorder;
|
1755 |
|
|
} else if (rank.getUuid().equals(ErmsTransformer.uuidRankParvorder)) {result = Parvorder;
|
1756 |
|
|
} else if (rank.equals(Rank.SECTION_ZOOLOGY())) {result = Animalia_Section;
|
1757 |
|
|
} else if (rank.equals(Rank.SUBSECTION_ZOOLOGY())) {result = Animalia_Subsection;
|
1758 |
|
|
} else if (rank.equals(Rank.SUPERFAMILY())) {result = Superfamily;
|
1759 |
|
|
} else if (rank.equals(Rank.NATIO())) {result = Natio;
|
1760 |
|
|
} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
|
1761 |
|
|
} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
|
1762 |
d7f95f72
|
Andreas Müller
|
} else {
|
1763 |
38e84b8e
|
Andreas Müller
|
//TODO Exception
|
1764 |
|
|
logger.warn("Rank for Kingdom Animalia not yet supported in CDM: "+ rank.getLabel());
|
1765 |
|
|
return null;
|
1766 |
|
|
}
|
1767 |
|
|
} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PLANTAE) {
|
1768 |
787b3ec2
|
Andreas Müller
|
if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
|
1769 |
|
|
} else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
|
1770 |
|
|
} else if (rank.equals(Rank.SECTION_BOTANY())) {result = Bot_Section;
|
1771 |
|
|
} else if (rank.equals(Rank.SUBSECTION_BOTANY())) {result = Bot_Subsection;
|
1772 |
|
|
} else if (rank.equals(Rank.SERIES())) {result = Series;
|
1773 |
|
|
} else if (rank.equals(Rank.SUBSERIES())) {result = Subseries;
|
1774 |
|
|
} else if (rank.equals(Rank.SPECIESAGGREGATE() )) {result = Aggregate;
|
1775 |
9528af19
|
Andreas Müller
|
} else if (rank.equals(Rank.SPECIESGROUP())) {
|
1776 |
|
|
logger.warn("Rank Species Group not yet implemented");
|
1777 |
|
|
result = null;
|
1778 |
787b3ec2
|
Andreas Müller
|
} else if (rank.getUuid().equals(Rank.uuidCollSpecies)) {result = Coll_Species;
|
1779 |
|
|
} else if (rank.equals(Rank.GREX())) {result = Grex;
|
1780 |
|
|
} else if (rank.getUuid().equals(Rank.uuidProles) ) {result = Proles;
|
1781 |
|
|
} else if (rank.getUuid().equals(Rank.uuidRace)) {result = Race;
|
1782 |
|
|
} else if (rank.equals(Rank.CONVAR())) {result = Convarietas;
|
1783 |
|
|
} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
|
1784 |
|
|
} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
|
1785 |
|
|
} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
|
1786 |
|
|
} else if (rank.equals(Rank.INFRAGENERICTAXON())) {result = Taxa_infragen;
|
1787 |
|
|
} else if (rank.equals(Rank.INFRASPECIFICTAXON())) {result = Taxa_infraspec;
|
1788 |
38e84b8e
|
Andreas Müller
|
} else {
|
1789 |
|
|
//TODO Exception
|
1790 |
|
|
logger.warn("Rank for Kingdom Plantae not yet supported in CDM: "+ rank.getLabel());
|
1791 |
|
|
return null;
|
1792 |
|
|
}
|
1793 |
787b3ec2
|
Andreas Müller
|
} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_FUNGI) {
|
1794 |
770828ca
|
Andreas Müller
|
if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
|
1795 |
|
|
} else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
|
1796 |
|
|
} else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
|
1797 |
|
|
} else if (rank.equals(Rank.SUBFORM())) { result = Subform;
|
1798 |
|
|
} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
|
1799 |
|
|
} else {
|
1800 |
787b3ec2
|
Andreas Müller
|
//TODO Exception
|
1801 |
|
|
logger.warn("Rank for Kingdom Fungi not yet supported in CDM: "+ rank.getLabel());
|
1802 |
|
|
return null;
|
1803 |
|
|
}
|
1804 |
d7f95f72
|
Andreas Müller
|
}else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PROTOZOA) {
|
1805 |
770828ca
|
Andreas Müller
|
if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
|
1806 |
|
|
} else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
|
1807 |
|
|
} else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
|
1808 |
|
|
} else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
|
1809 |
|
|
} else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
|
1810 |
|
|
} else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
|
1811 |
|
|
} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
|
1812 |
|
|
} else {
|
1813 |
d7f95f72
|
Andreas Müller
|
//TODO Exception
|
1814 |
|
|
logger.warn("Rank for Kingdom Protozoa not yet supported in CDM: "+ rank.getLabel());
|
1815 |
|
|
return null;
|
1816 |
|
|
}
|
1817 |
|
|
} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_BACTERIA) {
|
1818 |
770828ca
|
Andreas Müller
|
if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
|
1819 |
|
|
} else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
|
1820 |
|
|
} else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
|
1821 |
|
|
} else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
|
1822 |
|
|
} else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
|
1823 |
|
|
} else {
|
1824 |
d7f95f72
|
Andreas Müller
|
//TODO Exception
|
1825 |
|
|
logger.warn("Rank for Kingdom Bacteria not yet supported in CDM: "+ rank.getLabel());
|
1826 |
|
|
return null;
|
1827 |
|
|
}
|
1828 |
a124222b
|
Katja Luther
|
}else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_CHROMISTA) {
|
1829 |
770828ca
|
Andreas Müller
|
if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
|
1830 |
|
|
} else if (rank.equals(Rank.INFRAPHYLUM())) { result = Infraphylum;
|
1831 |
|
|
} else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
|
1832 |
|
|
} else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
|
1833 |
|
|
} else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
|
1834 |
|
|
} else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
|
1835 |
|
|
} else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
|
1836 |
|
|
} else if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
|
1837 |
|
|
} else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
|
1838 |
|
|
} else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
|
1839 |
|
|
} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
|
1840 |
|
|
} else {
|
1841 |
d7f95f72
|
Andreas Müller
|
//TODO Exception
|
1842 |
|
|
logger.warn("Rank for Kingdom Chromista not yet supported in CDM: "+ rank.getLabel());
|
1843 |
|
|
return null;
|
1844 |
|
|
}
|
1845 |
a124222b
|
Katja Luther
|
}else{
|
1846 |
38e84b8e
|
Andreas Müller
|
//TODO Exception
|
1847 |
|
|
logger.warn("Kingdom not yet supported in CDM: "+ pesiKingdomId);
|
1848 |
|
|
return null;
|
1849 |
|
|
}
|
1850 |
|
|
return result;
|
1851 |
|
|
}
|
1852 |
|
|
|
1853 |
|
|
public static Integer nameTypeDesignationStatus2TypeDesignationStatusId(NameTypeDesignationStatus nameTypeDesignationStatus) {
|
1854 |
|
|
if (nameTypeDesignationStatus == null) {
|
1855 |
|
|
return null;
|
1856 |
|
|
}
|
1857 |
|
|
if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
|
1858 |
|
|
return TYPE_BY_ORIGINAL_DESIGNATION;
|
1859 |
|
|
} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
|
1860 |
|
|
return TYPE_BY_SUBSEQUENT_DESIGNATION;
|
1861 |
|
|
} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
|
1862 |
|
|
return TYPE_BY_MONOTYPY;
|
1863 |
|
|
} else {
|
1864 |
|
|
//TODO Figure out a way to handle this gracefully.
|
1865 |
|
|
logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
|
1866 |
|
|
return null;
|
1867 |
|
|
}
|
1868 |
b91853a7
|
Andreas Müller
|
|
1869 |
38e84b8e
|
Andreas Müller
|
}
|
1870 |
|
|
|
1871 |
|
|
public static String nameTypeDesignationStatus2TypeDesignationStatusCache(NameTypeDesignationStatus nameTypeDesignationStatus) {
|
1872 |
|
|
if (nameTypeDesignationStatus == null) {
|
1873 |
|
|
return null;
|
1874 |
|
|
}
|
1875 |
|
|
if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
|
1876 |
|
|
return TYPE_STR_BY_ORIGINAL_DESIGNATION;
|
1877 |
|
|
} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
|
1878 |
|
|
return TYPE_STR_BY_SUBSEQUENT_DESIGNATION;
|
1879 |
|
|
} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
|
1880 |
|
|
return TYPE_STR_BY_MONOTYPY;
|
1881 |
|
|
} else {
|
1882 |
|
|
//TODO Figure out a way to handle this gracefully.
|
1883 |
|
|
logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
|
1884 |
|
|
return null;
|
1885 |
|
|
}
|
1886 |
|
|
}
|
1887 |
|
|
|
1888 |
|
|
/**
|
1889 |
c736e960
|
Andreas Müller
|
* @see PesiTaxonExport#doPhaseUpdates(PesiExportState) for further transformation
|
1890 |
38e84b8e
|
Andreas Müller
|
* @param taxonBase
|
1891 |
|
|
* @return
|
1892 |
|
|
*/
|
1893 |
|
|
public static Integer taxonBase2statusFk (TaxonBase<?> taxonBase){
|
1894 |
c736e960
|
Andreas Müller
|
if (taxonBase == null){
|
1895 |
|
|
return null;
|
1896 |
a124222b
|
Katja Luther
|
}
|
1897 |
38e84b8e
|
Andreas Müller
|
if (taxonBase.isInstanceOf(Taxon.class)){
|
1898 |
2518403a
|
Andreas Müller
|
Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
|
1899 |
d9f92b40
|
Andreas Müller
|
Set<TaxonRelationship> rels = taxon.getRelationsFromThisTaxon();
|
1900 |
|
|
Set<TaxonNode> nodes = taxon.getTaxonNodes();
|
1901 |
|
|
if (!rels.isEmpty() && !nodes.isEmpty()){
|
1902 |
|
|
logger.warn("Taxon has relations and parent. This is not expected in E+M, but maybe possible in ERMS. Check if taxon status is correct.");
|
1903 |
|
|
}else if (rels.isEmpty() && nodes.isEmpty()){
|
1904 |
|
|
logger.warn("Taxon has neither relations nor parent. This is not expected. Check if taxon status is correct.");
|
1905 |
|
|
}
|
1906 |
|
|
if (!rels.isEmpty()){
|
1907 |
|
|
//we expect all rels to have same type, maybe not true
|
1908 |
|
|
UUID relTypeUuid = rels.iterator().next().getType().getUuid();
|
1909 |
|
|
if (TaxonRelationshipType.proParteUuids().contains(relTypeUuid)){
|
1910 |
|
|
return T_STATUS_PRO_PARTE_SYN;
|
1911 |
|
|
}else if (TaxonRelationshipType.partialUuids().contains(relTypeUuid)){
|
1912 |
|
|
return T_STATUS_PARTIAL_SYN;
|
1913 |
|
|
}else if (TaxonRelationshipType.misappliedNameUuids().contains(relTypeUuid)){
|
1914 |
|
|
return T_STATUS_SYNONYM; //no explicit MAN status exists in PESI
|
1915 |
|
|
}
|
1916 |
2518403a
|
Andreas Müller
|
}
|
1917 |
d9f92b40
|
Andreas Müller
|
if (!nodes.isEmpty()){
|
1918 |
|
|
TaxonNode parentNode = nodes.iterator().next().getParent();
|
1919 |
|
|
if (parentNode.getTaxon() != null && !parentNode.getTaxon().isPublish()){
|
1920 |
|
|
if (parentNode.getTaxon().getUuid().equals(uuidTaxonValuelessEuroMed) ){
|
1921 |
|
|
return T_STATUS_NOT_ACCEPTED_VALUELESS;
|
1922 |
|
|
}
|
1923 |
|
|
}else{
|
1924 |
|
|
return T_STATUS_ACCEPTED;
|
1925 |
|
|
}
|
1926 |
|
|
}
|
1927 |
|
|
logger.error("Taxon status could not be defined. This should not happen: " + taxonBase.getTitleCache() );
|
1928 |
|
|
return T_STATUS_UNRESOLVED;
|
1929 |
38e84b8e
|
Andreas Müller
|
}else if (taxonBase.isInstanceOf(Synonym.class)){
|
1930 |
d9f92b40
|
Andreas Müller
|
Synonym synonym = CdmBase.deproxy(taxonBase, Synonym.class);
|
1931 |
|
|
if (taxonBase2statusFk(synonym.getAcceptedTaxon())== T_STATUS_NOT_ACCEPTED_VALUELESS ){
|
1932 |
|
|
return T_STATUS_NOT_ACCEPTED_VALUELESS;
|
1933 |
|
|
}else{
|
1934 |
|
|
return T_STATUS_SYNONYM;
|
1935 |
|
|
}
|
1936 |
38e84b8e
|
Andreas Müller
|
}else{
|
1937 |
d9f92b40
|
Andreas Müller
|
logger.warn("Unresolved taxon status.");
|
1938 |
38e84b8e
|
Andreas Müller
|
return T_STATUS_UNRESOLVED;
|
1939 |
|
|
}
|
1940 |
a124222b
|
Katja Luther
|
//TODO
|
1941 |
38e84b8e
|
Andreas Müller
|
// public static int T_STATUS_UNRESOLVED = 5;
|
1942 |
|
|
// public static int T_STATUS_ORPHANED = 6;
|
1943 |
|
|
}
|
1944 |
|
|
|
1945 |
c736e960
|
Andreas Müller
|
// /**
|
1946 |
a124222b
|
Katja Luther
|
// *
|
1947 |
c736e960
|
Andreas Müller
|
// * @param taxonBase
|
1948 |
|
|
// * @return
|
1949 |
|
|
// */
|
1950 |
|
|
// public static String taxonBase2statusCache (TaxonBase<?> taxonBase){
|
1951 |
|
|
// if (taxonBase == null){return null;}
|
1952 |
|
|
// if (taxonBase.isInstanceOf(Taxon.class)){
|
1953 |
|
|
// Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
|
1954 |
|
|
// if (taxon.getTaxonNodes().size() == 0){
|
1955 |
|
|
// return T_STATUS_STR_NOT_ACCEPTED;
|
1956 |
|
|
// }else{
|
1957 |
|
|
// return T_STATUS_STR_ACCEPTED;
|
1958 |
|
|
// }
|
1959 |
|
|
// }else if (taxonBase.isInstanceOf(Synonym.class)){
|
1960 |
|
|
// return T_STATUS_STR_SYNONYM;
|
1961 |
|
|
// }else{
|
1962 |
|
|
// logger.warn("Unknown ");
|
1963 |
|
|
// return T_STATUS_STR_UNRESOLVED;
|
1964 |
|
|
// }
|
1965 |
a124222b
|
Katja Luther
|
// //TODO
|
1966 |
38e84b8e
|
Andreas Müller
|
// public static int T_STATUS_STR_PARTIAL_SYN = 3;
|
1967 |
|
|
// public static int T_STATUS_STR_PRO_PARTE_SYN = 4;
|
1968 |
|
|
// public static int T_STATUS_STR_UNRESOLVED = 5;
|
1969 |
|
|
// public static int T_STATUS_STR_ORPHANED = 6;
|
1970 |
c736e960
|
Andreas Müller
|
// }
|
1971 |
a124222b
|
Katja Luther
|
|
1972 |
38e84b8e
|
Andreas Müller
|
/**
|
1973 |
|
|
* Returns the {@link SourceCategory SourceCategory} representation of the given {@link ReferenceType ReferenceType} in PESI.
|
1974 |
3dee8a19
|
Andreas Müller
|
* @param reference The {@link Reference Reference}.
|
1975 |
38e84b8e
|
Andreas Müller
|
* @return The {@link SourceCategory SourceCategory} representation in PESI.
|
1976 |
|
|
*/
|
1977 |
8422c0cd
|
Andreas Müller
|
public static Integer reference2SourceCategoryFK(Reference reference) {
|
1978 |
38e84b8e
|
Andreas Müller
|
if (reference == null){
|
1979 |
|
|
return null;
|
1980 |
|
|
} else if (reference.getType().equals(ReferenceType.Article)) {
|
1981 |
|
|
return REF_ARTICLE_IN_PERIODICAL;
|
1982 |
|
|
} else if (reference.getType().equals(ReferenceType.Book)) {
|
1983 |
|
|
return REF_BOOK;
|
1984 |
08439504
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.BookSection)) {
|
1985 |
|
|
return REF_PART_OF_OTHER;
|
1986 |
c810e72f
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.Section)) {
|
1987 |
|
|
return REF_PART_OF_OTHER;
|
1988 |
38e84b8e
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.Database)) {
|
1989 |
|
|
return REF_DATABASE;
|
1990 |
|
|
} else if (reference.getType().equals(ReferenceType.WebPage)) {
|
1991 |
|
|
return REF_WEBSITE;
|
1992 |
|
|
} else if (reference.getType().equals(ReferenceType.CdDvd)) {
|
1993 |
|
|
return REF_NOT_APPLICABLE;
|
1994 |
|
|
} else if (reference.getType().equals(ReferenceType.Journal)) {
|
1995 |
|
|
return REF_JOURNAL;
|
1996 |
|
|
} else if (reference.getType().equals(ReferenceType.PrintSeries)) {
|
1997 |
d9f92b40
|
Andreas Müller
|
return REF_PUBLICATION; //?
|
1998 |
38e84b8e
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.Proceedings)) {
|
1999 |
d9f92b40
|
Andreas Müller
|
return REF_PUBLICATION; //?
|
2000 |
38e84b8e
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.Patent)) {
|
2001 |
|
|
return REF_NOT_APPLICABLE;
|
2002 |
|
|
} else if (reference.getType().equals(ReferenceType.PersonalCommunication)) {
|
2003 |
|
|
return REF_INFORMAL;
|
2004 |
|
|
} else if (reference.getType().equals(ReferenceType.Report)) {
|
2005 |
|
|
return REF_NOT_APPLICABLE;
|
2006 |
|
|
} else if (reference.getType().equals(ReferenceType.Thesis)) {
|
2007 |
|
|
return REF_NOT_APPLICABLE;
|
2008 |
365949cd
|
Andreas Müller
|
} else if (reference.getType().equals(ReferenceType.Generic)) {
|
2009 |
|
|
if(reference.hasMarker(ErmsTransformer.uuidMarkerRefPublication, true)){
|
2010 |
|
|
return REF_PUBLICATION;
|
2011 |
|
|
}else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefInformal, true)){
|
2012 |
|
|
return REF_INFORMAL;
|
2013 |
|
|
}else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefTypeI, true)){
|
2014 |
|
|
logger.warn("ERMS ref type 'i' is not yet correctly matched to PESI");
|
2015 |
|
|
return REF_INFORMAL;
|
2016 |
|
|
}else{
|
2017 |
|
|
return REF_UNRESOLVED;
|
2018 |
|
|
}
|
2019 |
|
|
} else {
|
2020 |
08439504
|
Andreas Müller
|
logger.warn("Reference type not yet supported in PESI: "+ reference.getType());
|
2021 |
38e84b8e
|
Andreas Müller
|
return null;
|
2022 |
|
|
}
|
2023 |
|
|
}
|
2024 |
a124222b
|
Katja Luther
|
|
2025 |
38e84b8e
|
Andreas Müller
|
/**
|
2026 |
|
|
* Returns the {@link SourceCategoryCache SourceCategoryCache}.
|
2027 |
3dee8a19
|
Andreas Müller
|
* @param reference The {@link Reference Reference}.
|
2028 |
38e84b8e
|
Andreas Müller
|
* @return The {@link SourceCategoryCache SourceCategoryCache}.
|
2029 |
|
|
*/
|
2030 |
8422c0cd
|
Andreas Müller
|
public String getCacheByReference(Reference reference) {
|
2031 |
38e84b8e
|
Andreas Müller
|
if (reference == null){
|
2032 |
|
|
return null;
|
2033 |
4ce34990
|
Andreas Müller
|
}else{
|
2034 |
a124222b
|
Katja Luther
|
return this.sourceCategoryCacheMap.get(reference2SourceCategoryFK(reference));
|
2035 |
38e84b8e
|
Andreas Müller
|
}
|
2036 |
|
|
}
|
2037 |
|
|
|
2038 |
a124222b
|
Katja Luther
|
@Override
|
2039 |
|
|
public String getCacheByNomStatus(NomenclaturalStatusType status) {
|
2040 |
38e84b8e
|
Andreas Müller
|
if (status == null){
|
2041 |
|
|
return null;
|
2042 |
73441bfb
|
Andreas Müller
|
}else{
|
2043 |
a124222b
|
Katja Luther
|
return this.nameStatusCacheMap.get(nomStatus2nomStatusFk(status));
|
2044 |
38e84b8e
|
Andreas Müller
|
}
|
2045 |
|
|
}
|
2046 |
a124222b
|
Katja Luther
|
|
2047 |
38e84b8e
|
Andreas Müller
|
public static Integer nomStatus2nomStatusFk (NomenclaturalStatusType status){
|
2048 |
|
|
if (status == null){
|
2049 |
|
|
return null;
|
2050 |
|
|
}
|
2051 |
|
|
if (status.equals(NomenclaturalStatusType.INVALID())) {return NAME_ST_NOM_INVAL;
|
2052 |
|
|
}else if (status.equals(NomenclaturalStatusType.ILLEGITIMATE())) {return NAME_ST_NOM_ILLEG;
|
2053 |
|
|
}else if (status.equals(NomenclaturalStatusType.NUDUM())) {return NAME_ST_NOM_NUD;
|
2054 |
|
|
}else if (status.equals(NomenclaturalStatusType.REJECTED())) {return NAME_ST_NOM_REJ;
|
2055 |
|
|
}else if (status.equals(NomenclaturalStatusType.REJECTED_PROP())) {return NAME_ST_NOM_REJ_PROP;
|
2056 |
|
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED())) {return NAME_ST_NOM_UTIQUE_REJ;
|
2057 |
|
|
}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED_PROP())) {return NAME_ST_NOM_UTIQUE_REJ_PROP;
|
2058 |
|
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED())) {return NAME_ST_NOM_CONS;
|
2059 |
a124222b
|
Katja Luther
|
|
2060 |
38e84b8e
|
Andreas Müller
|
}else if (status.equals(NomenclaturalStatusType.CONSERVED_PROP())) {return NAME_ST_NOM_CONS_PROP;
|
2061 |
|
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED())) {return NAME_ST_ORTH_CONS;
|
2062 |
|
|
}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP())) {return NAME_ST_ORTH_CONS_PROP;
|
2063 |
|
|
}else if (status.equals(NomenclaturalStatusType.SUPERFLUOUS())) {return NAME_ST_NOM_SUPERFL;
|
2064 |
|
|
}else if (status.equals(NomenclaturalStatusType.AMBIGUOUS())) {return NAME_ST_NOM_AMBIG;
|
2065 |
|
|
}else if (status.equals(NomenclaturalStatusType.PROVISIONAL())) {return NAME_ST_NOM_PROVIS;
|
2066 |
|
|
}else if (status.equals(NomenclaturalStatusType.DOUBTFUL())) {return NAME_ST_NOM_DUB;
|
2067 |
|
|
}else if (status.equals(NomenclaturalStatusType.NOVUM())) {return NAME_ST_NOM_NOV;
|
2068 |
a124222b
|
Katja Luther
|
|
2069 |
38e84b8e
|
Andreas Müller
|
}else if (status.equals(NomenclaturalStatusType.CONFUSUM())) {return NAME_ST_NOM_CONFUS;
|
2070 |
|
|
}else if (status.equals(NomenclaturalStatusType.ALTERNATIVE())) {return NAME_ST_NOM_ALTERN;
|
2071 |
|
|
}else if (status.equals(NomenclaturalStatusType.COMBINATION_INVALID())) {return NAME_ST_COMB_INVAL;
|
2072 |
|
|
}else if (status.equals(NomenclaturalStatusType.LEGITIMATE())) {return NAME_ST_LEGITIMATE;
|
2073 |
a124222b
|
Katja Luther
|
|
2074 |
b607fa1a
|
Andreas Müller
|
}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusCombIned)||
|
2075 |
|
|
//FIXME deduplicate COMB_NOV
|
2076 |
|
|
status.equals(NomenclaturalStatusType.COMB_NOV())) {return NAME_ST_COMB_INED;
|
2077 |
30cdfea3
|
Andreas Müller
|
}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusNomOrthCons)) {return NAME_ST_NOM_AND_ORTH_CONS;
|
2078 |
|
|
}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusSpNovIned)) {return NAME_ST_SP_NOV_INED;
|
2079 |
a124222b
|
Katja Luther
|
|
2080 |
|
|
|
2081 |
38e84b8e
|
Andreas Müller
|
// The following are non-existent in CDM
|
2082 |
|
|
// }else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_COMB_AND_STAT_INED;
|
2083 |
|
|
// }else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_NOM_NOV_INED;
|
2084 |
33337032
|
Andreas Müller
|
}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusAlternateRepresentation)) {return NAME_ST_ALTERNATE_REPRESENTATION;
|
2085 |
|
|
}else if (status.getUuid().equals(uuidNomStatusTemporaryName)) {return NAME_ST_TEMPORARY_NAME;
|
2086 |
|
|
}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusSpeciesInquirenda)) {return NAME_ST_SPECIES_INQUIRENDA;
|
2087 |
38e84b8e
|
Andreas Müller
|
|
2088 |
|
|
//TODO
|
2089 |
|
|
}else {
|
2090 |
|
|
//TODO Exception
|
2091 |
|
|
logger.warn("NomStatus type not yet supported by PESI export: "+ status);
|
2092 |
|
|
return null;
|
2093 |
|
|
}
|
2094 |
|
|
}
|
2095 |
a124222b
|
Katja Luther
|
|
2096 |
38e84b8e
|
Andreas Müller
|
/**
|
2097 |
|
|
* Returns the RelTaxonQualifierCache for a given taxonRelation.
|
2098 |
|
|
* @param relation
|
2099 |
|
|
* @return
|
2100 |
|
|
*/
|
2101 |
96533ef2
|
Andreas Müller
|
public String getCacheByRelationshipType(RelationshipBase relation, NomenclaturalCode code){
|
2102 |
|
|
if (relation == null){
|
2103 |
38e84b8e
|
Andreas Müller
|
return null;
|
2104 |
96533ef2
|
Andreas Müller
|
}else{
|
2105 |
a124222b
|
Katja Luther
|
String result;
|
2106 |
734c3289
|
Andreas Müller
|
Integer key = taxonRelation2RelTaxonQualifierFk(relation);
|
2107 |
106a1a1e
|
Andreas Müller
|
if (code.equals(NomenclaturalCode.ICZN)){
|
2108 |
734c3289
|
Andreas Müller
|
result = this.taxRelZooQualifierCacheMap.get(key);
|
2109 |
|
|
if (result == null){
|
2110 |
5a251c5c
|
Andreas Müller
|
result = this.taxRelQualifierCacheMap.get(key);
|
2111 |
734c3289
|
Andreas Müller
|
}
|
2112 |
|
|
}else{
|
2113 |
a124222b
|
Katja Luther
|
result = this.taxRelQualifierCacheMap.get(key);
|
2114 |
106a1a1e
|
Andreas Müller
|
}
|
2115 |
734c3289
|
Andreas Müller
|
return result;
|
2116 |
96533ef2
|
Andreas Müller
|
}
|
2117 |
38e84b8e
|
Andreas Müller
|
}
|
2118 |
a124222b
|
Katja Luther
|
|
2119 |
308df7ca
|
Andreas Müller
|
public String getCacheBySynonymType(Synonym synonym, NomenclaturalCode code){
|
2120 |
|
|
if (synonym == null){
|
2121 |
|
|
return null;
|
2122 |
|
|
}else{
|
2123 |
|
|
String result;
|
2124 |
|
|
Integer key = synonym2RelTaxonQualifierFk(synonym);
|
2125 |
|
|
if (code.equals(NomenclaturalCode.ICZN)){
|
2126 |
|
|
result = this.taxRelZooQualifierCacheMap.get(key);
|
2127 |
|
|
if (result == null){
|
2128 |
5a251c5c
|
Andreas Müller
|
result = this.taxRelQualifierCacheMap.get(key);
|
2129 |
308df7ca
|
Andreas Müller
|
}
|
2130 |
|
|
}else{
|
2131 |
|
|
result = this.taxRelQualifierCacheMap.get(key);
|
2132 |
|
|
}
|
2133 |
|
|
return result;
|
2134 |
|
|
}
|
2135 |
|
|
}
|
2136 |
|
|
|
2137 |
|
|
public static Integer synonym2RelTaxonQualifierFk(Synonym synonym) {
|
2138 |
5a251c5c
|
Andreas Müller
|
if (synonym == null || synonym.getType() == null){
|
2139 |
308df7ca
|
Andreas Müller
|
return null;
|
2140 |
|
|
}
|
2141 |
|
|
SynonymType type = synonym.getType();
|
2142 |
5a251c5c
|
Andreas Müller
|
if (type.equals(SynonymType.SYNONYM_OF())) {return IS_SYNONYM_OF;
|
2143 |
|
|
}else if (type.equals(SynonymType.HOMOTYPIC_SYNONYM_OF())) {return IS_HOMOTYPIC_SYNONYM_OF;
|
2144 |
|
|
}else if (type.equals(SynonymType.HETEROTYPIC_SYNONYM_OF())) {return IS_HETEROTYPIC_SYNONYM_OF;
|
2145 |
|
|
}else if (type.equals(SynonymType.INFERRED_EPITHET_OF())) {return IS_INFERRED_EPITHET_FOR;
|
2146 |
|
|
}else if (type.equals(SynonymType.INFERRED_GENUS_OF())) {return IS_INFERRED_GENUS_FOR;
|
2147 |
|
|
}else if (type.equals(SynonymType.POTENTIAL_COMBINATION_OF())) {return IS_POTENTIAL_COMBINATION_FOR;
|
2148 |
|
|
}else if (type.equals(SynonymType.INFERRED_SYNONYM_OF())) {
|
2149 |
|
|
logger.warn("Inferred synonynm type not yet implemented. Should it realy exist?");
|
2150 |
|
|
return null;
|
2151 |
|
|
}else{
|
2152 |
|
|
logger.warn("Unhandled synonym type: " + type.getTitleCache());
|
2153 |
|
|
return null;
|
2154 |
308df7ca
|
Andreas Müller
|
}
|
2155 |
5a251c5c
|
Andreas Müller
|
// return IS_PRO_PARTE_SYNONYM_OF;
|
2156 |
|
|
// return IS_PARTIAL_SYNONYM_OF;
|
2157 |
|
|
// return IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF;
|
2158 |
|
|
// return IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF;
|
2159 |
|
|
// return IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF;
|
2160 |
|
|
// return IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF;
|
2161 |
308df7ca
|
Andreas Müller
|
}
|
2162 |
|
|
|
2163 |
5a251c5c
|
Andreas Müller
|
|
2164 |
38e84b8e
|
Andreas Müller
|
/**
|
2165 |
|
|
* Returns the RelTaxonQualifierFk for a TaxonRelation.
|
2166 |
|
|
* @param relation
|
2167 |
|
|
* @return
|
2168 |
|
|
*/
|
2169 |
|
|
public static Integer taxonRelation2RelTaxonQualifierFk(RelationshipBase<?,?,?> relation) {
|
2170 |
5a251c5c
|
Andreas Müller
|
if (relation == null || relation.getType() == null) {
|
2171 |
38e84b8e
|
Andreas Müller
|
return null;
|
2172 |
|
|
}
|
2173 |
|
|
RelationshipTermBase<?> type = relation.getType();
|
2174 |
|
|
if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {
|
2175 |
|
|
return IS_MISAPPLIED_NAME_FOR;
|
2176 |
9d857396
|
Andreas Müller
|
} else if (type.equals(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR())) {
|
2177 |
|
|
return IS_PRO_PARTE_MISAPPLIED_NAME_FOR;
|
2178 |
7dcac868
|
Andreas Müller
|
} else if (type.equals(TaxonRelationshipType.PRO_PARTE_SYNONYM_FOR())) {
|
2179 |
|
|
return IS_PRO_PARTE_SYNONYM_OF;
|
2180 |
|
|
} else if (type.equals(TaxonRelationshipType.PARTIAL_SYNONYM_FOR())) {
|
2181 |
|
|
return IS_PARTIAL_SYNONYM_OF;
|
2182 |
|
|
} else if (type.equals(NameRelationshipType.BASIONYM())) {
|
2183 |
38e84b8e
|
Andreas Müller
|
return IS_BASIONYM_FOR;
|
2184 |
|
|
} else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {
|
2185 |
|
|
return IS_LATER_HOMONYM_OF;
|
2186 |
|
|
} else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {
|
2187 |
|
|
return IS_REPLACED_SYNONYM_FOR;
|
2188 |
|
|
} else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {
|
2189 |
|
|
return IS_VALIDATION_OF;
|
2190 |
|
|
} else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {
|
2191 |
|
|
return IS_LATER_VALIDATION_OF;
|
2192 |
|
|
} else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {
|
2193 |
|
|
return IS_CONSERVED_AGAINST;
|
2194 |
|
|
} else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {
|
2195 |
|
|
return IS_TREATED_AS_LATER_HOMONYM_OF;
|
2196 |
|
|
} else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {
|
2197 |
|
|
return IS_ORTHOGRAPHIC_VARIANT_OF;
|
2198 |
9d857396
|
Andreas Müller
|
} else if (type.equals(NameRelationshipType.ORIGINAL_SPELLING())) {
|
2199 |
|
|
return IS_ORIGINAL_SPELLING_FOR;
|
2200 |
|
|
} else if (type.equals(NameRelationshipType.BLOCKING_NAME_FOR())) {
|
2201 |
|
|
return IS_BLOCKING_NAME_FOR;
|
2202 |
38e84b8e
|
Andreas Müller
|
} else if (type.equals(NameRelationshipType.ALTERNATIVE_NAME())) {
|
2203 |
|
|
return IS_ALTERNATIVE_NAME_FOR;
|
2204 |
96533ef2
|
Andreas Müller
|
} else if (type.equals(HybridRelationshipType.FEMALE_PARENT())) {
|
2205 |
|
|
return IS_FEMALE_PARENT_OF;
|
2206 |
|
|
} else if (type.equals(HybridRelationshipType.MALE_PARENT())) {
|
2207 |
|
|
return IS_MALE_PARENT_OF;
|
2208 |
|
|
} else if (type.equals(HybridRelationshipType.FIRST_PARENT())) {
|
2209 |
|
|
return IS_FIRST_PARENT_OF;
|
2210 |
|
|
} else if (type.equals(HybridRelationshipType.SECOND_PARENT())) {
|
2211 |
|
|
return IS_SECOND_PARENT_OF;
|
2212 |
7dcac868
|
Andreas Müller
|
} else if (type.getUuid().equals(TaxonRelationshipType.uuidSynonymOfTaxonRelationship)) {
|
2213 |
c1a5c2bd
|
Andreas Müller
|
return IS_SYNONYM_OF;
|
2214 |
7dcac868
|
Andreas Müller
|
} else if (type.getUuid().equals(TaxonRelationshipType.uuidHeterotypicSynonymTaxonRelationship)) {
|
2215 |
|
|
return IS_HETEROTYPIC_SYNONYM_OF;
|
2216 |
|
|
} else if (type.getUuid().equals(TaxonRelationshipType.uuidHomotypicSynonymTaxonRelationship)) {
|
2217 |
|
|
return IS_HOMOTYPIC_SYNONYM_OF;
|
2218 |
38e84b8e
|
Andreas Müller
|
} else {
|
2219 |
|
|
logger.warn("No equivalent RelationshipType found in datawarehouse for: " + type.getTitleCache());
|
2220 |
|
|
}
|
2221 |
|
|
|
2222 |
|
|
// The following have no equivalent attribute in CDM
|
2223 |
|
|
// IS_TYPE_OF
|
2224 |
|
|
// IS_CONSERVED_TYPE_OF
|
2225 |
|
|
// IS_REJECTED_TYPE_OF
|
2226 |
|
|
// IS_REJECTED_IN_FAVOUR_OF
|
2227 |
|
|
// HAS_SAME_TYPE_AS
|
2228 |
|
|
// IS_LECTOTYPE_OF
|
2229 |
|
|
// TYPE_NOT_DESIGNATED
|
2230 |
96533ef2
|
Andreas Müller
|
|
2231 |
38e84b8e
|
Andreas Müller
|
|
2232 |
|
|
return null;
|
2233 |
|
|
}
|
2234 |
bbeda5af
|
Katja Luther
|
/**
|
2235 |
79276af0
|
Andreas Müller
|
* FIXME still needed?
|
2236 |
bbeda5af
|
Katja Luther
|
* Returns the RelTaxonQualifierFk for a TaxonRelation.
|
2237 |
|
|
* @param relation
|
2238 |
|
|
* @return
|
2239 |
|
|
*/
|
2240 |
274b83d6
|
Andreas Müller
|
public static Integer synonymrelation2RelTaxonQualifierFk(Synonym syn) {
|
2241 |
bbeda5af
|
Katja Luther
|
if (syn.getAcceptedTaxon() == null) {
|
2242 |
|
|
return null;
|
2243 |
|
|
}
|
2244 |
308df7ca
|
Andreas Müller
|
if (syn.getType().equals(SynonymType.HETEROTYPIC_SYNONYM_OF())){
|
2245 |
bbeda5af
|
Katja Luther
|
return IS_HETEROTYPIC_SYNONYM_OF;
|
2246 |
|
|
} else if (syn.getType().equals(SynonymType.HOMOTYPIC_SYNONYM_OF())){
|
2247 |
|
|
return IS_HOMOTYPIC_SYNONYM_OF;
|
2248 |
|
|
}else if (syn.getType().equals(SynonymType.INFERRED_EPITHET_OF())) {
|
2249 |
|
|
return IS_INFERRED_EPITHET_FOR;
|
2250 |
|
|
} else if (syn.getType().equals(SynonymType.INFERRED_GENUS_OF())) {
|
2251 |
|
|
return IS_INFERRED_GENUS_FOR;
|
2252 |
|
|
} else if (syn.getType().equals(SynonymType.POTENTIAL_COMBINATION_OF())) {
|
2253 |
|
|
return IS_POTENTIAL_COMBINATION_FOR;
|
2254 |
|
|
}
|
2255 |
|
|
return IS_SYNONYM_OF;
|
2256 |
|
|
|
2257 |
|
|
}
|
2258 |
a124222b
|
Katja Luther
|
|
2259 |
38e84b8e
|
Andreas Müller
|
/**
|
2260 |
73441bfb
|
Andreas Müller
|
* Returns the StatusFk for a given StatusCache.
|
2261 |
|
|
* @param StatusCache
|
2262 |
38e84b8e
|
Andreas Müller
|
* @return
|
2263 |
|
|
*/
|
2264 |
bff8d9fe
|
Andreas Müller
|
public Integer statusCache2StatusFk(String StatusCache) {
|
2265 |
38e84b8e
|
Andreas Müller
|
Integer result = null;
|
2266 |
73441bfb
|
Andreas Müller
|
if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor: included in ERMS 1.1")) {
|
2267 |
38e84b8e
|
Andreas Müller
|
return 0;
|
2268 |
73441bfb
|
Andreas Müller
|
} else if (StatusCache.equalsIgnoreCase("Added by Database Management Team")) {
|
2269 |
38e84b8e
|
Andreas Müller
|
return 2;
|
2270 |
73441bfb
|
Andreas Müller
|
} else if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor")) {
|
2271 |
38e84b8e
|
Andreas Müller
|
return 3;
|
2272 |
73441bfb
|
Andreas Müller
|
} else if (StatusCache.equalsIgnoreCase("Edited by Database Management Team")) {
|
2273 |
38e84b8e
|
Andreas Müller
|
return 4;
|
2274 |
|
|
} else {
|
2275 |
73441bfb
|
Andreas Müller
|
logger.error("StatusFk could not be determined. StatusCache unknown: " + StatusCache);
|
2276 |
38e84b8e
|
Andreas Müller
|
}
|
2277 |
a124222b
|
Katja Luther
|
|
2278 |
38e84b8e
|
Andreas Müller
|
return result;
|
2279 |
|
|
}
|
2280 |
a124222b
|
Katja Luther
|
|
2281 |
38e84b8e
|
Andreas Müller
|
/**
|
2282 |
|
|
* Returns the FossilStatusFk for a given FossilStatusCache.
|
2283 |
|
|
* @param fossilStatusCache
|
2284 |
|
|
* @return
|
2285 |
|
|
*/
|
2286 |
bff8d9fe
|
Andreas Müller
|
public Integer fossilStatusCache2FossilStatusFk(String fossilStatusCache) {
|
2287 |
38e84b8e
|
Andreas Müller
|
Integer result = null;
|
2288 |
|
|
if (fossilStatusCache.equalsIgnoreCase("recent only")) {
|
2289 |
|
|
return 1;
|
2290 |
|
|
} else if (fossilStatusCache.equalsIgnoreCase("fossil only")) {
|
2291 |
|
|
return 2;
|
2292 |
|
|
} else if (fossilStatusCache.equalsIgnoreCase("recent + fossil")) {
|
2293 |
|
|
return 3;
|
2294 |
|
|
} else {
|
2295 |
|
|
logger.error("FossilStatusFk could not be determined. FossilStatusCache unknown: " + fossilStatusCache);
|
2296 |
|
|
}
|
2297 |
a124222b
|
Katja Luther
|
|
2298 |
38e84b8e
|
Andreas Müller
|
return result;
|
2299 |
|
|
}
|
2300 |
|
|
|
2301 |
|
|
/**
|
2302 |
|
|
* Returns the NoteCategoryFk for a given UUID representing an ExtensionType.
|
2303 |
|
|
* @param uuid
|
2304 |
|
|
* @return
|
2305 |
|
|
*/
|
2306 |
|
|
public static Integer getNoteCategoryFk(UUID uuid) {
|
2307 |
|
|
Integer result = null;
|
2308 |
a6871bd2
|
Andreas Müller
|
if (uuid.equals(uuidExtTaxComment)) {
|
2309 |
38e84b8e
|
Andreas Müller
|
result = 270;
|
2310 |
a6871bd2
|
Andreas Müller
|
} else if (uuid.equals(uuidExtFauComment)) {
|
2311 |
38e84b8e
|
Andreas Müller
|
result = 281;
|
2312 |
a6871bd2
|
Andreas Müller
|
} else if (uuid.equals(uuidExtFauExtraCodes)) {
|
2313 |
38e84b8e
|
Andreas Müller
|
result = 278;
|
2314 |
|
|
}
|
2315 |
|
|
return result;
|
2316 |
|
|
}
|
2317 |
a124222b
|
Katja Luther
|
|
2318 |
38e84b8e
|
Andreas Müller
|
/**
|
2319 |
|
|
* Returns the NoteCategoryCache for a given UUID representing an ExtensionType.
|
2320 |
|
|
* @param uuid
|
2321 |
|
|
* @return
|
2322 |
|
|
*/
|
2323 |
|
|
public static String getNoteCategoryCache(UUID uuid) {
|
2324 |
|
|
String result = null;
|
2325 |
a6871bd2
|
Andreas Müller
|
if (uuid.equals(uuidExtTaxComment)) {
|
2326 |
38e84b8e
|
Andreas Müller
|
result = "Taxonomy";
|
2327 |
a6871bd2
|
Andreas Müller
|
} else if (uuid.equals(uuidExtFauComment)) {
|
2328 |
38e84b8e
|
Andreas Müller
|
result = "Biology";
|
2329 |
a6871bd2
|
Andreas Müller
|
} else if (uuid.equals(uuidExtFauExtraCodes)) {
|
2330 |
38e84b8e
|
Andreas Müller
|
result = "Distribution";
|
2331 |
|
|
}
|
2332 |
|
|
return result;
|
2333 |
|
|
}
|
2334 |
73441bfb
|
Andreas Müller
|
|
2335 |
22e0d6ae
|
Andreas Müller
|
public static Integer getQualityStatusKeyBySource(EnumSet<PesiSource> sources, TaxonName taxonName) {
|
2336 |
|
|
if (sources.contains(PesiSource.EM)){
|
2337 |
73441bfb
|
Andreas Müller
|
return QUALITY_STATUS_ADD_BY_DBMT;
|
2338 |
22e0d6ae
|
Andreas Müller
|
}else if (sources.contains(PesiSource.ERMS)){
|
2339 |
c1a5c2bd
|
Andreas Müller
|
Set<String> statusSet = getAllQualityStatus(taxonName);
|
2340 |
|
|
if (statusSet.size() > 1){
|
2341 |
|
|
logger.warn("ERMS TaxonName has more than 1 quality status: " + taxonName.getTitleCache() + "; lisd=" + taxonName.getLsid());
|
2342 |
|
|
}
|
2343 |
|
|
if (statusSet.contains("Checked by Taxonomic Editor: included in ERMS 1.1")){
|
2344 |
|
|
return QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1;
|
2345 |
|
|
}else if (statusSet.contains("Added by Database Management Team")){
|
2346 |
|
|
return QUALITY_STATUS_ADD_BY_DBMT;
|
2347 |
|
|
}else if (statusSet.contains("Checked by Taxonomic Editor")){
|
2348 |
|
|
return QUALITY_STATUS_CHECKED_EDITOR;
|
2349 |
|
|
}else if (statusSet.contains("Edited by Database Management Team")){
|
2350 |
|
|
return QUALITY_STATUS_EDITED_BY_DBMT;
|
2351 |
|
|
}else{
|
2352 |
|
|
logger.warn("Unknown ERMS quality status: " + statusSet.iterator().next() + " for taxon name " + taxonName.getTitleCache());
|
2353 |
|
|
return null;
|
2354 |
|
|
}
|
2355 |
73441bfb
|
Andreas Müller
|
}else{
|
2356 |
a124222b
|
Katja Luther
|
return null; // TODO needs to be implemented for others
|
2357 |
73441bfb
|
Andreas Müller
|
}
|
2358 |
|
|
}
|
2359 |
c1a5c2bd
|
Andreas Müller
|
|
2360 |
a124222b
|
Katja Luther
|
|
2361 |
51688d00
|
Andreas Müller
|
private static Set<String> getAllQualityStatus(TaxonName taxonName) {
|
2362 |
|
|
Set<String> result = new HashSet<>();
|
2363 |
c1a5c2bd
|
Andreas Müller
|
for (TaxonBase<?> taxonBase : taxonName.getTaxonBases()){
|
2364 |
649ffe58
|
Andreas Müller
|
result.addAll(taxonBase.getExtensions(ErmsTransformer.uuidExtQualityStatus));
|
2365 |
c1a5c2bd
|
Andreas Müller
|
}
|
2366 |
|
|
return result;
|
2367 |
|
|
}
|
2368 |
|
|
|
2369 |
73441bfb
|
Andreas Müller
|
@Override
|
2370 |
|
|
public String getQualityStatusCacheByKey(Integer qualityStatusId) throws UndefinedTransformerMethodException {
|
2371 |
|
|
if (qualityStatusId == null){
|
2372 |
|
|
return null;
|
2373 |
|
|
}else{
|
2374 |
a124222b
|
Katja Luther
|
return this.qualityStatusCacheMap.get(qualityStatusId);
|
2375 |
73441bfb
|
Andreas Müller
|
}
|
2376 |
|
|
}
|
2377 |
a124222b
|
Katja Luther
|
|
2378 |
5312971d
|
Andreas Müller
|
|
2379 |
|
|
public Object getSourceUseCacheByKey(Integer sourceUseFk) {
|
2380 |
|
|
if (sourceUseFk == null){
|
2381 |
|
|
return null;
|
2382 |
|
|
}else{
|
2383 |
a124222b
|
Katja Luther
|
return this.sourceUseCacheMap.get(sourceUseFk);
|
2384 |
5312971d
|
Andreas Müller
|
}
|
2385 |
|
|
}
|
2386 |
a124222b
|
Katja Luther
|
|
2387 |
f08f9f6d
|
Andreas Müller
|
//TODO create a reverse map
|
2388 |
|
|
public Integer getSourceUseKeyCacheByCache(String sourceUseCache) {
|
2389 |
|
|
if (sourceUseCache == null){
|
2390 |
|
|
return null;
|
2391 |
|
|
}else{
|
2392 |
|
|
for (Integer key: sourceUseCacheMap.keySet()){
|
2393 |
|
|
if (sourceUseCacheMap.get(key).equalsIgnoreCase(sourceUseCache)){
|
2394 |
|
|
return key;
|
2395 |
|
|
}
|
2396 |
|
|
}
|
2397 |
|
|
}
|
2398 |
|
|
return null;
|
2399 |
|
|
}
|
2400 |
|
|
|
2401 |
c736e960
|
Andreas Müller
|
@Override
|
2402 |
|
|
public String getTaxonStatusCacheByKey(Integer taxonStatusId) throws UndefinedTransformerMethodException {
|
2403 |
|
|
if (taxonStatusId == null){
|
2404 |
|
|
return null;
|
2405 |
|
|
}else{
|
2406 |
a124222b
|
Katja Luther
|
return this.taxonStatusCacheMap.get(taxonStatusId);
|
2407 |
c736e960
|
Andreas Müller
|
}
|
2408 |
|
|
}
|
2409 |
73441bfb
|
Andreas Müller
|
|
2410 |
22e0d6ae
|
Andreas Müller
|
public static String getOriginalDbBySources(EnumSet<PesiSource> sources) {
|
2411 |
73441bfb
|
Andreas Müller
|
String result = "";
|
2412 |
22e0d6ae
|
Andreas Müller
|
if (sources.contains(PesiSource.EM)){
|
2413 |
73441bfb
|
Andreas Müller
|
result = CdmUtils.concat(",", result, SOURCE_STR_EM);
|
2414 |
|
|
}
|
2415 |
22e0d6ae
|
Andreas Müller
|
if (sources.contains(PesiSource.FE)){
|
2416 |
73441bfb
|
Andreas Müller
|
result = CdmUtils.concat(",", result, SOURCE_STR_FE);
|
2417 |
|
|
}
|
2418 |
22e0d6ae
|
Andreas Müller
|
if (sources.contains(PesiSource.IF)){
|
2419 |
73441bfb
|
Andreas Müller
|
result = CdmUtils.concat(",", result, SOURCE_STR_IF);
|
2420 |
|
|
}
|
2421 |
22e0d6ae
|
Andreas Müller
|
if (sources.contains(PesiSource.ERMS)){
|
2422 |
73441bfb
|
Andreas Müller
|
result = CdmUtils.concat(",", result, SOURCE_STR_ERMS);
|
2423 |
|
|
}
|
2424 |
a124222b
|
Katja Luther
|
|
2425 |
73441bfb
|
Andreas Müller
|
return result;
|
2426 |
|
|
}
|
2427 |
|
|
|
2428 |
8d5e5e53
|
Andreas Müller
|
public static Integer pesiKingdomId(String str) {
|
2429 |
|
|
return pesiKingdomMap.get(str);
|
2430 |
a124222b
|
Katja Luther
|
}
|
2431 |
38e84b8e
|
Andreas Müller
|
}
|