EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.plantglossary.kew;

import java.io.File;

import java.util.Map;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.common.CdmUtils;

import eu.etaxonomy.cdm.io.csv.in.CsvImportBase;

import eu.etaxonomy.cdm.model.common.IdentifiableSource;

import eu.etaxonomy.cdm.model.term.TermType;

/**

 *

 * @author pplitzner

 * @since Jan 25, 2019

 *

 */

@Component

public class KewPlantGlossaryImport extends CsvImportBase<KewPlantGlossaryCsvImportConfigurator, KewPlantGlossaryCsvImportState, File>{

    private static final long serialVersionUID = -5600766240192189822L;

    private static Logger logger = Logger.getLogger(KewPlantGlossaryImport.class);

    final String HEADER_LABEL = "term";

    final String HEADER_DEFINITION = "definition";

    final String HEADER_TYPE = "type";

    @Override

    protected void handleSingleLine(KewPlantGlossaryCsvImportState importState) {

        Map<String, String> currentRecord = importState.getCurrentRecord();

        if(CdmUtils.isBlank(currentRecord.get(HEADER_TYPE)) || !currentRecord.get(HEADER_TYPE).equals("1")){

            // only structures (type=1) are imported

            return;

        }

        String termLabel = currentRecord.get(HEADER_LABEL);

        //check if already present

        if(importState.isTermPresent(termLabel, getTermService())){

            return;

        }

        TermVocabulary vocabulary = importState.getStructureVoc();

        vocabulary.addTerm(structure);

        source.setIdInSource(termLabel);

        structure.addSource(source);

        getVocabularyService().saveOrUpdate(vocabulary);

        getTermService().saveOrUpdate(structure);

    }

}