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9cc1a3e2
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Andreas Kohlbecker
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<?php
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2 |
e06884e4
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Andreas Kohlbecker
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// $Id$
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3 |
9cc1a3e2
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Andreas Kohlbecker
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4 |
05fe0ad6
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Andreas Kohlbecker
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/*
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5 |
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* @file
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* cdm_dataportal
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7 |
67a4a4c6
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Andreas Kohlbecker
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*
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8 |
05fe0ad6
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Andreas Kohlbecker
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* Copyright (C) 2007 EDIT
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67a4a4c6
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Andreas Kohlbecker
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* European Distributed Institute of Taxonomy
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05fe0ad6
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Andreas Kohlbecker
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* http://www.e-taxonomy.eu
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11 |
94112bee
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n.hoffmann
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*
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12 |
05fe0ad6
|
Andreas Kohlbecker
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*/
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8ff851c6
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Andreas Kohlbecker
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require_once('node_types.php');
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47a8c0dd
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Andreas Kohlbecker
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require_once('cdm_dataportal.theme.php');
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9cc1a3e2
|
Andreas Kohlbecker
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8ff851c6
|
Andreas Kohlbecker
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30c5a6bd
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Andreas Kohlbecker
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define(CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE, 25);
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67a4a4c6
|
Andreas Kohlbecker
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/* ====================== hook implementations ====================== */
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21 |
9cc1a3e2
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Andreas Kohlbecker
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/**
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23 |
bf910101
|
Andreas Kohlbecker
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* Implementation of hook_help()
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24 |
67a4a4c6
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Andreas Kohlbecker
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*
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9cc1a3e2
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Andreas Kohlbecker
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* Display help and module information
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* @param section which section of the site we're displaying help
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* @return help text for section
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*/
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function cdm_dataportal_help($section='') {
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67a4a4c6
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Andreas Kohlbecker
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$out = '';
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switch ($section) {
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case "admin/modules#description":
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$out = t("The dataportal publishes CDM data hosted in a CommunityStore on the web.");
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break;
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}
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return $out;
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38 |
9cc1a3e2
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Andreas Kohlbecker
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}
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/**
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42 |
bf910101
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Andreas Kohlbecker
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* Implementation of hook_perm()
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67a4a4c6
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Andreas Kohlbecker
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*
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9cc1a3e2
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Andreas Kohlbecker
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* Valid permissions for this module
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* @return array An array of valid permissions for the portfolio module
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*/
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function cdm_dataportal_perm() {
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67a4a4c6
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Andreas Kohlbecker
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return array(
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9cc1a3e2
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Andreas Kohlbecker
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'administer cdm_dataportal',
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ba2bca28
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Andreas Kohlbecker
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'cdm_dataportal view notes',
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67a4a4c6
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Andreas Kohlbecker
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//TODO which else permission are required? -> check the WP6 requirements document
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);
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9cc1a3e2
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Andreas Kohlbecker
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}
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/**
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57 |
bf910101
|
Andreas Kohlbecker
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* Implementation of hook_menu()
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9cc1a3e2
|
Andreas Kohlbecker
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*/
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function cdm_dataportal_menu($may_cache) {
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f5851190
|
n.hoffmann
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$items = array();
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9cc1a3e2
|
Andreas Kohlbecker
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if ($may_cache) {
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67a4a4c6
|
Andreas Kohlbecker
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9cc1a3e2
|
Andreas Kohlbecker
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$items[] = array(
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'path' => 'admin/settings/cdm_dataportal',
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'title' => t('CDM Dataportal'),
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'description' => t('Setting for the CDM Dataportal'),
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'access' => user_access('administer cdm_dataportal'),
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'callback' => 'drupal_get_form',
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'callback arguments' => 'cdm_dataportal_settings',
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a22e3f38
|
Andreas Kohlbecker
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);
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812a9c04
|
Andreas Kohlbecker
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/*$items[] = array(
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a22e3f38
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Andreas Kohlbecker
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'path' => 'admin/settings/cdm_dataportal/ws',
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'title' => t('Web Service'),
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'description' => t('Setting for the CDM Dataportal'),
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'access' => user_access('administer cdm_dataportal'),
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'callback' => 'drupal_get_form',
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'callback arguments' => 'cdm_dataportal_settings',
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'weight' => 1,
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'type' => MENU_DEFAULT_LOCAL_TASK,
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812a9c04
|
Andreas Kohlbecker
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);*/
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a22e3f38
|
Andreas Kohlbecker
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9cc1a3e2
|
Andreas Kohlbecker
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$items[] = array(
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'path' => 'cdm_dataportal/names',
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'callback' => 'cdm_dataportal_view_names',
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'access' => true,
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94112bee
|
n.hoffmann
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'type' => MENU_CALLBACK,
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67a4a4c6
|
Andreas Kohlbecker
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);
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// optional callback arguments: page
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4726aac7
|
Andreas Kohlbecker
|
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67a4a4c6
|
Andreas Kohlbecker
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$items[] = array(
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4726aac7
|
Andreas Kohlbecker
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'path' => 'cdm_dataportal/taxon',
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8ff851c6
|
Andreas Kohlbecker
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'callback' => 'cdm_dataportal_taxon_page_view',
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4726aac7
|
Andreas Kohlbecker
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'access' => true,
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'type' => MENU_CALLBACK,
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0302b693
|
Andreas Kohlbecker
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// expected callback arguments: uuid
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4726aac7
|
Andreas Kohlbecker
|
);
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$items[] = array(
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'path' => 'cdm_dataportal/reference',
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'callback' => 'cdm_dataportal_view_reference',
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'access' => true,
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'type' => MENU_CALLBACK,
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105 |
0302b693
|
Andreas Kohlbecker
|
// expected callback arguments: uuid
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106 |
67a4a4c6
|
Andreas Kohlbecker
|
);
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107 |
ee99abea
|
Andreas Kohlbecker
|
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108 |
46a52efe
|
Andreas Kohlbecker
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$items[] = array(
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'path' => 'cdm_dataportal/reference/list',
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'callback' => 'cdm_dataportal_view_reference_list',
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'access' => true,
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'type' => MENU_CALLBACK,
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113 |
0302b693
|
Andreas Kohlbecker
|
// expected callback arguments: uuid
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114 |
46a52efe
|
Andreas Kohlbecker
|
);
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115 |
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2cd9a3d6
|
Andreas Kohlbecker
|
$items[] = array(
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117 |
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'path' => 'cdm_dataportal/media',
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'callback' => 'cdm_dataportal_view_media',
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119 |
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'access' => true,
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120 |
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'type' => MENU_CALLBACK,
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121 |
0302b693
|
Andreas Kohlbecker
|
// expected callback arguments: uuid, mediarepresentation_uuid, part_uuid or part#
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122 |
2cd9a3d6
|
Andreas Kohlbecker
|
);
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123 |
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124 |
2447830d
|
Andreas Kohlbecker
|
$items[] = array(
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125 |
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'path' => 'cdm_dataportal/search',
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126 |
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'callback' => 'cdm_dataportal_view_search_advanced',
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127 |
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'access' => true,
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'type' => MENU_CALLBACK,
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129 |
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);
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130 |
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131 |
ee99abea
|
Andreas Kohlbecker
|
$items[] = array(
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132 |
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'path' => 'cdm_dataportal/search/taxon',
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133 |
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'callback' => 'cdm_dataportal_view_search_taxon',
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134 |
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'access' => true,
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135 |
94112bee
|
n.hoffmann
|
'type' => MENU_CALLBACK,
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136 |
f5851190
|
n.hoffmann
|
);
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137 |
ee99abea
|
Andreas Kohlbecker
|
|
138 |
67a4a4c6
|
Andreas Kohlbecker
|
$items[] = array(
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139 |
05fe0ad6
|
Andreas Kohlbecker
|
'path' => 'cdm/xml2json',
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140 |
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'callback' => 'cdm_view_xml2json',
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141 |
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'access' => true,
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142 |
94112bee
|
n.hoffmann
|
'type' => MENU_CALLBACK,
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143 |
67a4a4c6
|
Andreas Kohlbecker
|
);
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144 |
f5851190
|
n.hoffmann
|
|
145 |
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146 |
4726aac7
|
Andreas Kohlbecker
|
} else {
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147 |
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// may not cache
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148 |
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// --- local tasks for Taxon
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149 |
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if(variable_get('cdm_dataportal_taxonpage_tabs', 1)) {
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150 |
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$items[] = array(
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152 |
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'path' => 'cdm_dataportal/taxon/'.arg(2),
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153 |
0d127818
|
Andreas Kohlbecker
|
'title' => theme('cdm_taxonpage_tab', 'General'),
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154 |
8ff851c6
|
Andreas Kohlbecker
|
'callback' => 'cdm_dataportal_taxon_page_view',
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155 |
4726aac7
|
Andreas Kohlbecker
|
'access' => true,
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156 |
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'type' => MENU_CALLBACK,
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157 |
3cf0dec2
|
Andreas Kohlbecker
|
'weight' => 1,
|
158 |
24b09d7c
|
Andreas Kohlbecker
|
'callback arguments' => array(arg(2), "description")
|
159 |
4726aac7
|
Andreas Kohlbecker
|
// expected callback arguments: name_uuid
|
160 |
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);
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161 |
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|
162 |
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$items[] = array(
|
163 |
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'path' => 'cdm_dataportal/taxon/'.arg(2).'/description',
|
164 |
0d127818
|
Andreas Kohlbecker
|
'title' => theme('cdm_taxonpage_tab', 'General'),
|
165 |
8ff851c6
|
Andreas Kohlbecker
|
'callback' => 'cdm_dataportal_taxon_page_view',
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166 |
4726aac7
|
Andreas Kohlbecker
|
'access' => true,
|
167 |
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'type' => MENU_DEFAULT_LOCAL_TASK,
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168 |
3cf0dec2
|
Andreas Kohlbecker
|
'weight' => 2,
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169 |
4726aac7
|
Andreas Kohlbecker
|
'callback arguments' => array(arg(2), "description")
|
170 |
|
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// expected callback arguments: name_uuid
|
171 |
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);
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172 |
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|
173 |
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$items[] = array(
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174 |
3cf0dec2
|
Andreas Kohlbecker
|
'path' => 'cdm_dataportal/taxon/'.arg(2).'/synonymy',
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175 |
0d127818
|
Andreas Kohlbecker
|
'title' => theme('cdm_taxonpage_tab', 'Synonymy'),
|
176 |
8ff851c6
|
Andreas Kohlbecker
|
'callback' => 'cdm_dataportal_taxon_page_view',
|
177 |
4726aac7
|
Andreas Kohlbecker
|
'access' => true,
|
178 |
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'type' => MENU_LOCAL_TASK,
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179 |
3cf0dec2
|
Andreas Kohlbecker
|
'weight' => 3,
|
180 |
|
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'callback arguments' => array(arg(2), "synonymy")
|
181 |
4726aac7
|
Andreas Kohlbecker
|
// expected callback arguments: name_uuid
|
182 |
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);
|
183 |
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|
184 |
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$items[] = array(
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185 |
3cf0dec2
|
Andreas Kohlbecker
|
'path' => 'cdm_dataportal/taxon/'.arg(2).'/images',
|
186 |
0d127818
|
Andreas Kohlbecker
|
'title' => theme('cdm_taxonpage_tab', 'Images'),
|
187 |
8ff851c6
|
Andreas Kohlbecker
|
'callback' => 'cdm_dataportal_taxon_page_view',
|
188 |
4726aac7
|
Andreas Kohlbecker
|
'access' => true,
|
189 |
|
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'type' => MENU_LOCAL_TASK,
|
190 |
3cf0dec2
|
Andreas Kohlbecker
|
'weight' => 4,
|
191 |
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'callback arguments' => array(arg(2), "images")
|
192 |
4726aac7
|
Andreas Kohlbecker
|
// expected callback arguments: name_uuid
|
193 |
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);
|
194 |
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}
|
195 |
f5851190
|
n.hoffmann
|
}
|
196 |
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|
197 |
2189699f
|
Andreas Kohlbecker
|
drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal.css');
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198 |
6611904c
|
Andreas Kohlbecker
|
//drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_print.css', 'print');
|
199 |
|
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_screen.css', 'screen');
|
200 |
f5851190
|
n.hoffmann
|
|
201 |
9cc1a3e2
|
Andreas Kohlbecker
|
return $items;
|
202 |
c0ac3382
|
Andreas Kohlbecker
|
|
203 |
9cc1a3e2
|
Andreas Kohlbecker
|
}
|
204 |
|
|
|
205 |
d946105e
|
Andreas Kohlbecker
|
/**
|
206 |
|
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* Implementation of hook_block()
|
207 |
67a4a4c6
|
Andreas Kohlbecker
|
*
|
208 |
d946105e
|
Andreas Kohlbecker
|
* Provides the following blocks:
|
209 |
|
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* 0: list of links useful during development
|
210 |
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*
|
211 |
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* @param String $op
|
212 |
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* @param int $delta
|
213 |
|
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*/
|
214 |
|
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function cdm_dataportal_block($op='list', $delta=0) {
|
215 |
|
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// listing of blocks, such as on the admin/block page
|
216 |
|
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if ($op == "list") {
|
217 |
8738c560
|
f.revilla
|
//$block[0]["info"] = t("CDM DataPortal DevLinks");
|
218 |
67a4a4c6
|
Andreas Kohlbecker
|
$block[1]["info"] = t("CDM DataPortal Credits");
|
219 |
ee99abea
|
Andreas Kohlbecker
|
$block[2]["info"] = t("CDM Search Taxa");
|
220 |
8738c560
|
f.revilla
|
//$block[3]["info"] = t("CDM Filters");
|
221 |
|
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$block[4]["info"] = t("CDM Dataportal Print");
|
222 |
d946105e
|
Andreas Kohlbecker
|
return $block;
|
223 |
|
|
}
|
224 |
|
|
else if ($op == 'view') {
|
225 |
|
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switch($delta){
|
226 |
67a4a4c6
|
Andreas Kohlbecker
|
case 1:
|
227 |
|
|
$block['subject'] = t('Credits');
|
228 |
c0ac3382
|
Andreas Kohlbecker
|
$block['content'] = theme('cdm_credits');
|
229 |
|
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return $block;
|
230 |
ee99abea
|
Andreas Kohlbecker
|
case 2:
|
231 |
|
|
$block['subject'] = t('Search Taxa');
|
232 |
|
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$block['content'] = drupal_get_form('cdm_dataportal_search_taxon_form');
|
233 |
8934f97c
|
Andreas Kohlbecker
|
$block['content'] .= '<div>'.l('Advanced Search', '/cdm_dataportal/search').'</div>';
|
234 |
ee99abea
|
Andreas Kohlbecker
|
return $block;
|
235 |
8738c560
|
f.revilla
|
case 4:
|
236 |
|
|
$block['subject'] = t('Print this page');
|
237 |
|
|
$block['content'] = theme('cdm_print_button');;
|
238 |
|
|
return $block;
|
239 |
|
|
}
|
240 |
d946105e
|
Andreas Kohlbecker
|
}
|
241 |
|
|
}
|
242 |
|
|
|
243 |
9cc1a3e2
|
Andreas Kohlbecker
|
|
244 |
47a8c0dd
|
Andreas Kohlbecker
|
/**
|
245 |
|
|
* Implementation of hook_validate()
|
246 |
|
|
*
|
247 |
|
|
* @param $element
|
248 |
|
|
*/
|
249 |
afbbba9e
|
Andreas Kohlbecker
|
function cdm_dataportal_settings_validate($form_id, $form_values){
|
250 |
812a9c04
|
Andreas Kohlbecker
|
|
251 |
afbbba9e
|
Andreas Kohlbecker
|
if (!str_endsWith($form_values['cdm_webservice_url'], '/')) {
|
252 |
67a4a4c6
|
Andreas Kohlbecker
|
form_set_error('cdm_webservice_url', t("The URL to the CDM Web Service must end with a slash: '/'."));
|
253 |
|
|
}
|
254 |
812a9c04
|
Andreas Kohlbecker
|
|
255 |
|
|
$cdm_webservice_url_changed = variable_get('cdm_webservice_url', '') != $form_values['cdm_webservice_url'];
|
256 |
|
|
|
257 |
24b09d7c
|
Andreas Kohlbecker
|
$cdm_secUuid_default_changed = variable_get('cdm_secUuid_default', '') != $form_values['cdm_secUuid_default'];
|
258 |
|
|
|
259 |
|
|
if ($cdm_webservice_url_changed || $cdm_secUuid_default_changed) {
|
260 |
|
|
|
261 |
|
|
_cdm_dataportal_set_currentSecUuid($form_values['cdm_secUuid_default']);
|
262 |
812a9c04
|
Andreas Kohlbecker
|
// reset all cdm related data stored in the session
|
263 |
6e1ec3a4
|
Andreas Kohlbecker
|
// cdm_dataportal_session_clear($form_values['cdm_webservice_url']); // cdm_webservice_url is not further stored here
|
264 |
fa68c2c5
|
Andreas Kohlbecker
|
// clear the cdm webservice cache
|
265 |
|
|
cache_clear_all(NULL, 'cache_cdm_ws');
|
266 |
6e1ec3a4
|
Andreas Kohlbecker
|
// better clear secref_cache since i can not be sure if the cache has not be used during this response
|
267 |
|
|
cdm_api_secref_cache_clear();
|
268 |
812a9c04
|
Andreas Kohlbecker
|
}
|
269 |
5d53a642
|
Andreas Kohlbecker
|
if($form_values['cdm_webservice_cache'] != variable_get('cdm_webservice_cache', 1)){
|
270 |
|
|
cache_clear_all(NULL, 'cache_cdm_ws');
|
271 |
6e1ec3a4
|
Andreas Kohlbecker
|
// better clear secref_cache since i can not be sure if the cache has not be used during this response
|
272 |
|
|
cdm_api_secref_cache_clear();
|
273 |
5d53a642
|
Andreas Kohlbecker
|
}
|
274 |
812a9c04
|
Andreas Kohlbecker
|
|
275 |
47a8c0dd
|
Andreas Kohlbecker
|
}
|
276 |
|
|
|
277 |
94112bee
|
n.hoffmann
|
/*
|
278 |
a27e2588
|
Andreas Kohlbecker
|
function cdm_dataportal_session_clear($cdm_ws_uri_update = false){
|
279 |
|
|
$_SESSION['cdm'] = null;
|
280 |
|
|
if(is_string($cdm_ws_uri_update)){
|
281 |
|
|
$_SESSION['cdm'] = array('ws_uri'=>$cdm_ws_uri_update);
|
282 |
|
|
}
|
283 |
|
|
}
|
284 |
|
|
|
285 |
|
|
function cdm_dataportal_session_validate(){
|
286 |
|
|
|
287 |
|
|
if(!isset($_SESSION['cdm']['ws_uri'])){
|
288 |
|
|
$_SESSION['cdm'] = array('ws_uri'=>variable_get('cdm_webservice_url', false));
|
289 |
|
|
} else if($_SESSION['cdm']['ws_uri'] != variable_get('cdm_webservice_url', false)){
|
290 |
|
|
cdm_dataportal_session_clear(variable_get('cdm_webservice_url', false));
|
291 |
|
|
}
|
292 |
|
|
}
|
293 |
44e02685
|
Andreas Kohlbecker
|
*/
|
294 |
812a9c04
|
Andreas Kohlbecker
|
|
295 |
2447830d
|
Andreas Kohlbecker
|
function cdm_dataportal_search_taxon_form($advancedForm = false){
|
296 |
|
|
|
297 |
|
|
$preset_query = (isset($_SESSION['cdm']['search']['query']) ? $_SESSION['cdm']['search']['query'] : '');
|
298 |
fa650011
|
Andreas Kohlbecker
|
$preset_doTaxa = (isset($_SESSION['cdm']['search']['doTaxa']) ? 1 : 0);
|
299 |
abd0ab13
|
Andreas Kohlbecker
|
$preset_doSynonyms = (isset($_SESSION['cdm']['search']['doSynonyms']) ? 1 : 0);
|
300 |
|
|
$preset_doTaxaByCommonNames = (isset($_SESSION['cdm']['search']['doTaxaByCommonNames']) ? 1 : 0);
|
301 |
8934f97c
|
Andreas Kohlbecker
|
$tdwg_level_select = (isset($_SESSION['cdm']['search']['tdwg_level_select']) ? $_SESSION['cdm']['search']['tdwg_level_select'] : 2);
|
302 |
fa650011
|
Andreas Kohlbecker
|
$selected_areas = (isset($_SESSION['cdm']['search']['area']) ? $_SESSION['cdm']['search']['area'] : false);
|
303 |
ee99abea
|
Andreas Kohlbecker
|
|
304 |
6611904c
|
Andreas Kohlbecker
|
$url = 'cdm_dataportal/search/taxon';
|
305 |
|
|
$form['#method'] = 'get';
|
306 |
|
|
$form['#process'] = array('cdm_dataportal_search_process' => array());
|
307 |
|
|
$form['#action'] = url($url, NULL, NULL, true);
|
308 |
|
|
|
309 |
24b09d7c
|
Andreas Kohlbecker
|
$form['query'] = array(
|
310 |
2447830d
|
Andreas Kohlbecker
|
'#delta' => 0,
|
311 |
ee99abea
|
Andreas Kohlbecker
|
'#type' => 'textfield',
|
312 |
|
|
'#size' => 20,
|
313 |
304cdf42
|
Andreas Kohlbecker
|
'#attributes' => array('title' => t('Enter the name or part of a name you wish to search for. The asterisk character * can always be used as wildcard')),
|
314 |
2447830d
|
Andreas Kohlbecker
|
'#value' => $preset_query,
|
315 |
6611904c
|
Andreas Kohlbecker
|
);
|
316 |
|
|
|
317 |
2447830d
|
Andreas Kohlbecker
|
$form['search'] = array(
|
318 |
|
|
'#delta' => 1,
|
319 |
|
|
'#tree' => true,
|
320 |
|
|
//'#type' => $advancedForm ? 'fieldset': 'hidden',
|
321 |
|
|
'#title' => t('Options')
|
322 |
|
|
);
|
323 |
8934f97c
|
Andreas Kohlbecker
|
|
324 |
9ee2882b
|
Andreas Kohlbecker
|
$form['search']['tree'] = array(
|
325 |
8934f97c
|
Andreas Kohlbecker
|
'#delta' => -1,
|
326 |
|
|
'#type' => 'hidden',
|
327 |
9ee2882b
|
Andreas Kohlbecker
|
'#value' => variable_get('cdm_taxonomictree_uuid', false)
|
328 |
8934f97c
|
Andreas Kohlbecker
|
);
|
329 |
2447830d
|
Andreas Kohlbecker
|
|
330 |
6611904c
|
Andreas Kohlbecker
|
|
331 |
|
|
// clean URL get forms breaks if we don't give it a 'q'.
|
332 |
|
|
if (!(bool)variable_get('clean_url', '0')) {
|
333 |
2447830d
|
Andreas Kohlbecker
|
$form['search']['q'] = array(
|
334 |
|
|
'#delta' => -1,
|
335 |
6611904c
|
Andreas Kohlbecker
|
'#type' => 'hidden',
|
336 |
|
|
'#value' => $url,
|
337 |
|
|
'#name' => 'q',
|
338 |
|
|
);
|
339 |
|
|
}
|
340 |
2447830d
|
Andreas Kohlbecker
|
|
341 |
|
|
$form['search']['pageSize'] = array(
|
342 |
|
|
'#delta' => -1,
|
343 |
|
|
'#type' => 'hidden',
|
344 |
|
|
'#value' => variable_get('cdm_dataportal_search_items_on_page', 25)
|
345 |
|
|
);
|
346 |
|
|
|
347 |
|
|
if($advancedForm){
|
348 |
8934f97c
|
Andreas Kohlbecker
|
// general search parameters
|
349 |
|
|
$form['search']['doTaxa'] = array(
|
350 |
2447830d
|
Andreas Kohlbecker
|
'#delta' => 2,
|
351 |
|
|
'#type' => 'checkbox',
|
352 |
|
|
'#title' => t('Search for accepted taxa'),
|
353 |
|
|
'#value' => $preset_doTaxa
|
354 |
8934f97c
|
Andreas Kohlbecker
|
);
|
355 |
|
|
$form['search']['doSynonyms'] = array(
|
356 |
2447830d
|
Andreas Kohlbecker
|
'#delta' => 3,
|
357 |
|
|
'#type' => 'checkbox',
|
358 |
|
|
'#title' => t('Search for synonyms'),
|
359 |
|
|
'#value' => $preset_doSynonyms
|
360 |
8934f97c
|
Andreas Kohlbecker
|
);
|
361 |
|
|
$form['search']['doTaxaByCommonNames'] = array(
|
362 |
2447830d
|
Andreas Kohlbecker
|
'#delta' => 4,
|
363 |
|
|
'#type' => 'checkbox',
|
364 |
|
|
'#title' => t('Search for common names'),
|
365 |
|
|
'#value' => $preset_doTaxaByCommonNames
|
366 |
8934f97c
|
Andreas Kohlbecker
|
);
|
367 |
|
|
|
368 |
|
|
// Geographic Range
|
369 |
|
|
$form['search']['geographic_range'] = array(
|
370 |
|
|
'#type' => 'fieldset',
|
371 |
|
|
'#delta' => 5,
|
372 |
|
|
'#tree' => true,
|
373 |
|
|
'#title' => t('Geographic range'),
|
374 |
|
|
);
|
375 |
|
|
|
376 |
|
|
$form['search']['geographic_range']['tdwg_level_select'] = array(
|
377 |
|
|
'#type' => 'radios',
|
378 |
7e29aa4f
|
Andreas Kohlbecker
|
'#title' => t('Select a TDWG distribution level and code'),
|
379 |
8934f97c
|
Andreas Kohlbecker
|
'#default_value' => $tdwg_level_select,
|
380 |
|
|
'#options' => array(
|
381 |
|
|
t('TDWG level-1, i.e. a continent'),
|
382 |
|
|
t('TDWG level-2'),
|
383 |
|
|
t('TDWG level-3, i.e. a country'),
|
384 |
|
|
t('TDWG level-4')
|
385 |
|
|
)
|
386 |
|
|
);
|
387 |
|
|
$tdwg[1] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '1');
|
388 |
|
|
$tdwg[2] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '2');
|
389 |
|
|
$tdwg[3] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '3');
|
390 |
|
|
$tdwg[4] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '4');
|
391 |
|
|
|
392 |
|
|
$tdwg_js = '';
|
393 |
|
|
foreach($tdwg as $key=>$tdwg_level){
|
394 |
|
|
$tdwgOptions = array();
|
395 |
|
|
$tdwgOptionsSelected = array();
|
396 |
|
|
foreach($tdwg_level as $area){
|
397 |
|
|
$representation = $area->representations[0];
|
398 |
|
|
$tdwgOptions[$representation->abbreviatedLabel] = $area->representation_L10n;
|
399 |
fa650011
|
Andreas Kohlbecker
|
if(is_array($selected_areas) && in_array($representation->abbreviatedLabel, $selected_areas)){
|
400 |
|
|
$tdwgOptionsSelected[] = $representation->abbreviatedLabel; //$area->uuid;
|
401 |
8934f97c
|
Andreas Kohlbecker
|
}
|
402 |
|
|
}
|
403 |
abd0ab13
|
Andreas Kohlbecker
|
asort($tdwgOptions);
|
404 |
8934f97c
|
Andreas Kohlbecker
|
$form['search']['geographic_range']['tdwg_level_'.$key] = array(
|
405 |
|
|
'#type' => 'select',
|
406 |
|
|
'#title' => t('TDWG level').' '.$key,
|
407 |
|
|
'#default_value' => $tdwgOptionsSelected,
|
408 |
|
|
'#multiple' => TRUE,
|
409 |
|
|
'#options' => $tdwgOptions
|
410 |
|
|
);
|
411 |
abd0ab13
|
Andreas Kohlbecker
|
$tdwg_js .= "$('#edit-search-geographic-range-tdwg-level-$key').parent()".($tdwg_level_select + 1 == $key ? '.show()' : '.hide()'). ";\n";
|
412 |
8934f97c
|
Andreas Kohlbecker
|
}
|
413 |
|
|
|
414 |
|
|
drupal_add_js(
|
415 |
|
|
"$(document).ready(function(){
|
416 |
|
|
|
417 |
|
|
$(\"input[@name='search[geographic_range][tdwg_level_select]']\").change(
|
418 |
|
|
function(event){
|
419 |
|
|
var selectId = $(\"input[@name='search[geographic_range][tdwg_level_select]']:checked\").val();
|
420 |
|
|
var i;
|
421 |
|
|
for(i = 0; i < 4; i++){
|
422 |
|
|
if(selectId == i){
|
423 |
|
|
$('#edit-search-geographic-range-tdwg-level-' + (i + 1) ).parent().fadeIn('slow');
|
424 |
|
|
$('#edit-search-geographic-range-tdwg-level-' + (i + 1)).children().removeAttr('selected');
|
425 |
|
|
} else {
|
426 |
|
|
$('#edit-search-geographic-range-tdwg-level-' + (i + 1)).parent().fadeOut('slow');
|
427 |
|
|
$('#edit-search-geographic-range-tdwg-level-' + (i + 1)).children().removeAttr('selected');
|
428 |
|
|
}
|
429 |
|
|
}
|
430 |
|
|
}
|
431 |
|
|
);
|
432 |
|
|
|
433 |
|
|
$tdwg_js
|
434 |
|
|
});",
|
435 |
|
|
'inline');
|
436 |
|
|
|
437 |
2447830d
|
Andreas Kohlbecker
|
} else {
|
438 |
|
|
$form['search']['doTaxa'] = array(
|
439 |
|
|
'#delta' => -2,
|
440 |
|
|
'#type' => 'hidden',
|
441 |
|
|
'#value' => 1
|
442 |
|
|
);
|
443 |
|
|
$form['search']['doSynonyms'] = array(
|
444 |
|
|
'#delta' => -3,
|
445 |
|
|
'#type' => 'hidden',
|
446 |
|
|
'#value' => 1
|
447 |
|
|
);
|
448 |
|
|
$form['search']['doTaxaByCommonNames'] = array(
|
449 |
|
|
'#delta' => -4,
|
450 |
|
|
'#type' => 'hidden',
|
451 |
|
|
'#value' => 1
|
452 |
|
|
);
|
453 |
|
|
}
|
454 |
|
|
|
455 |
|
|
$form['submit'] = array(
|
456 |
|
|
'#delta' => 9,
|
457 |
|
|
'#type' => 'submit',
|
458 |
|
|
'#name' => '',
|
459 |
|
|
'#value' => t('Search')
|
460 |
|
|
);
|
461 |
|
|
|
462 |
ee99abea
|
Andreas Kohlbecker
|
return $form;
|
463 |
|
|
}
|
464 |
|
|
|
465 |
2447830d
|
Andreas Kohlbecker
|
function cdm_dataportal_search_taxon_form_advanced(){
|
466 |
|
|
return cdm_dataportal_search_taxon_form(true);
|
467 |
|
|
}
|
468 |
|
|
|
469 |
24b09d7c
|
Andreas Kohlbecker
|
/**
|
470 |
|
|
* Implementation #process method call, see form_builder()
|
471 |
|
|
* <p>
|
472 |
|
|
* Removes Drupal internal form elements from query
|
473 |
|
|
* @param $form
|
474 |
|
|
* @return unknown_type
|
475 |
|
|
*/
|
476 |
6611904c
|
Andreas Kohlbecker
|
function cdm_dataportal_search_process($form) {
|
477 |
|
|
unset($form['form_id']);
|
478 |
|
|
unset($form['form_token']);
|
479 |
|
|
return $form;
|
480 |
|
|
}
|
481 |
|
|
|
482 |
|
|
/**
|
483 |
|
|
* Filters $_REQUEST by a list of valid request parameters and also sets defaults if required.
|
484 |
|
|
* returns the processed request parameters submitted by the search form.
|
485 |
|
|
*/
|
486 |
24b09d7c
|
Andreas Kohlbecker
|
function cdm_dataportal_search_form_request(){
|
487 |
daba333b
|
Andreas Kohlbecker
|
|
488 |
fa650011
|
Andreas Kohlbecker
|
|
489 |
|
|
$form_params = array();
|
490 |
|
|
array_deep_copy($_REQUEST['search'], $form_params);
|
491 |
|
|
$form_params['query'] = trim($_REQUEST['query']);
|
492 |
|
|
|
493 |
8934f97c
|
Andreas Kohlbecker
|
// split of geographic range
|
494 |
|
|
if(isset($_REQUEST['search']['geographic_range'])){
|
495 |
|
|
$geographicRange = $_REQUEST['search']['geographic_range'];
|
496 |
fa650011
|
Andreas Kohlbecker
|
// remove
|
497 |
|
|
unset($form_params['geographic_range']);
|
498 |
8934f97c
|
Andreas Kohlbecker
|
}
|
499 |
24b09d7c
|
Andreas Kohlbecker
|
|
500 |
8934f97c
|
Andreas Kohlbecker
|
// add geographic range
|
501 |
|
|
if($geographicRange){
|
502 |
|
|
$form_params['tdwg_level_select'] = $geographicRange['tdwg_level_select'];
|
503 |
|
|
for($i = 1; $i < 5; $i++){
|
504 |
|
|
if(isset($geographicRange['tdwg_level_'.$i])){
|
505 |
|
|
$form_params['area'] = $geographicRange['tdwg_level_'.$i];
|
506 |
|
|
}
|
507 |
|
|
}
|
508 |
|
|
}
|
509 |
|
|
|
510 |
|
|
// store in session
|
511 |
81df545f
|
Andreas Kohlbecker
|
$_SESSION['cdm']['search'] = $form_params;
|
512 |
24b09d7c
|
Andreas Kohlbecker
|
|
513 |
6611904c
|
Andreas Kohlbecker
|
return $form_params;
|
514 |
|
|
}
|
515 |
|
|
|
516 |
|
|
|
517 |
81df545f
|
Andreas Kohlbecker
|
/* UNREACHABLE since action of form directly links to view
|
518 |
ee99abea
|
Andreas Kohlbecker
|
function cdm_dataportal_search_taxon_form_submit($form_id, $form_values) {
|
519 |
|
|
|
520 |
|
|
$_SESSION['cdm']['search'] = $form_values;
|
521 |
94112bee
|
n.hoffmann
|
//return '/cdm_dataportal/search/taxon/'.$form_values['queryString'].'/'.($form_values['vernacular']?'1':'0').'/'.$form_values['language'];
|
522 |
|
|
return '/cdm_dataportal/search/taxon/'.$form_values['queryString'].'/'.($form_values['onlyAccepted']?'1':'0');
|
523 |
cacc1bbf
|
Andreas Kohlbecker
|
//$paramstr = compose_url_prameterstr($form_values);
|
524 |
|
|
//return url('/cdm_dataportal/search/taxon/', $paramstr);
|
525 |
ee99abea
|
Andreas Kohlbecker
|
}
|
526 |
6611904c
|
Andreas Kohlbecker
|
*/
|
527 |
9cc1a3e2
|
Andreas Kohlbecker
|
/* ====================== menu callback functions ====================== */
|
528 |
|
|
|
529 |
|
|
/**
|
530 |
|
|
* Generate main administration form.
|
531 |
|
|
*
|
532 |
|
|
* @return
|
533 |
|
|
* An array containing form items to place on the module settings page.
|
534 |
|
|
*/
|
535 |
|
|
function cdm_dataportal_settings(){
|
536 |
|
|
|
537 |
2e748209
|
Andreas Kohlbecker
|
$form = cdm_api_settings_form();
|
538 |
80047c07
|
Andreas Kohlbecker
|
|
539 |
2e748209
|
Andreas Kohlbecker
|
//TODO: settings are still incomplete, compare with trunk/dataportal/inc/config_default.php.inc
|
540 |
6ee322a7
|
Andreas Kohlbecker
|
$form['cdm_dataportal'] = array(
|
541 |
|
|
'#type' => 'fieldset',
|
542 |
|
|
'#title' => t('CDM DataPortal'),
|
543 |
|
|
'#collapsible' => FALSE,
|
544 |
|
|
'#collapsed' => TRUE,
|
545 |
|
|
);
|
546 |
30c5a6bd
|
Andreas Kohlbecker
|
|
547 |
2447830d
|
Andreas Kohlbecker
|
// $form['cdm_dataportal']['secuuid_widget'] = array(
|
548 |
|
|
// '#type' => 'select_secuuid', // => will be themed by theme_select_secuuid(...)
|
549 |
|
|
// '#title' => t('Default Concept References'),
|
550 |
|
|
// '#description' => t('The default \'sensu\' reference to start the CDM DataPortal with. Per user choices are possible and may override this value.'),
|
551 |
|
|
// '#varname' => 'cdm_secUuid_default',
|
552 |
|
|
// '#multiple' => false
|
553 |
|
|
// );
|
554 |
|
|
|
555 |
|
|
$taxonTrees = cdm_ws_get(CDM_WS_TAXONOMY);
|
556 |
|
|
foreach($taxonTrees as $tree){
|
557 |
|
|
$taxonomicTreeOptions[$tree->uuid] = $tree->titleCache;
|
558 |
|
|
}
|
559 |
|
|
$form['cdm_dataportal']['cdm_taxonomictree_uuid'] = array(
|
560 |
|
|
'#type' => 'select',
|
561 |
|
|
'#title' => t('Available taxonomic views'),
|
562 |
|
|
'#default_value' => variable_get('cdm_taxonomictree_uuid', false),
|
563 |
|
|
'#options' => $taxonomicTreeOptions,
|
564 |
|
|
'#description' => t('Select a taxonomic view for this webservice.')
|
565 |
|
|
);
|
566 |
ba2bca28
|
Andreas Kohlbecker
|
|
567 |
ef374f09
|
Andreas Kohlbecker
|
// $form['cdm_dataportal']['DEBUG']= array(
|
568 |
|
|
// '#value' => '<pre>'.print_r($taxonTrees, true).'</pre>'
|
569 |
|
|
// );
|
570 |
94112bee
|
n.hoffmann
|
|
571 |
9d98a3c0
|
n.hoffmann
|
|
572 |
|
|
//------------------ FEATURE TREE --------------------//
|
573 |
|
|
|
574 |
|
|
$form['cdm_dataportal']['feature_tree'] = array(
|
575 |
|
|
'#type' => 'fieldset',
|
576 |
|
|
'#title' => t('Feature Tree'),
|
577 |
|
|
'#collapsible' => TRUE,
|
578 |
|
|
'#collapsed' => TRUE,
|
579 |
|
|
);
|
580 |
|
|
|
581 |
24b09d7c
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['feature_tree']['cdm_dataportal_featuretree_uuid'] = array(
|
582 |
94112bee
|
n.hoffmann
|
'#type' => 'select',
|
583 |
d93dad11
|
n.hoffmann
|
'#title' => t('Available FeatureTrees'),
|
584 |
24b09d7c
|
Andreas Kohlbecker
|
'#default_value' => variable_get('cdm_dataportal_featuretree_uuid', false),
|
585 |
|
|
'#options' => _get_feature_trees(),
|
586 |
|
|
'#description' => t('Select a FeatureTree for this webservice.'
|
587 |
|
|
//.' If there is no applicable FeatureTree you can create a new one using the <a href="">FeatureTreeManager</a>'
|
588 |
|
|
)
|
589 |
ba2bca28
|
Andreas Kohlbecker
|
);
|
590 |
39ceedd6
|
n.hoffmann
|
|
591 |
d93dad11
|
n.hoffmann
|
//------------------ LAYOUT --------------------//
|
592 |
|
|
|
593 |
39ceedd6
|
n.hoffmann
|
$form['cdm_dataportal']['layout'] = array(
|
594 |
|
|
'#type' => 'fieldset',
|
595 |
|
|
'#title' => t('Layout'),
|
596 |
9d98a3c0
|
n.hoffmann
|
'#collapsible' => TRUE,
|
597 |
39ceedd6
|
n.hoffmann
|
'#collapsed' => TRUE,
|
598 |
ff6a8ea7
|
Andreas Kohlbecker
|
);
|
599 |
|
|
|
600 |
70fb5e15
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['layout']['cdm_taxonname_type'] = array(
|
601 |
ff6a8ea7
|
Andreas Kohlbecker
|
'#type' => 'select',
|
602 |
|
|
'#title' => t('Taxon name type'),
|
603 |
|
|
'#default_value' => variable_get('cdm_taxonname_type', 'BotanicalName'),
|
604 |
|
|
'#options' => array( 'BotanicalName'=>t('BotanicalName'), 'ZoologicalName'=>t('ZoologicalName')),
|
605 |
|
|
'#description' => t('')
|
606 |
39ceedd6
|
n.hoffmann
|
);
|
607 |
|
|
|
608 |
|
|
$form['cdm_dataportal']['layout']['cdm_dataportal_nomref_in_title'] = array(
|
609 |
|
|
'#type' => 'checkbox',
|
610 |
72568f3e
|
Andreas Kohlbecker
|
'#title' => t('Hide full nomenclatural reference in title'),
|
611 |
39ceedd6
|
n.hoffmann
|
'#default_value' => variable_get('cdm_dataportal_nomref_in_title', 1),
|
612 |
72568f3e
|
Andreas Kohlbecker
|
'#description' => t('Uncheck this, if you want the title of a taxon page consisting of name and author plus publication year only.
|
613 |
39ceedd6
|
n.hoffmann
|
If not checked, the first homotypic taxon is a repetition of the accepted taxon with
|
614 |
|
|
the full nomenclatural reference.')
|
615 |
|
|
);
|
616 |
d93dad11
|
n.hoffmann
|
|
617 |
|
|
$form['cdm_dataportal']['layout']['cdm_dataportal_display_name_relations'] = array(
|
618 |
|
|
'#type' => 'checkbox',
|
619 |
|
|
'#title' => t('Show name relations of accepted taxa on taxon page'),
|
620 |
|
|
'#default_value' => variable_get('cdm_dataportal_display_name_relations', 1),
|
621 |
|
|
'#description' => t('')
|
622 |
4726aac7
|
Andreas Kohlbecker
|
);
|
623 |
|
|
|
624 |
24b09d7c
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['layout']['cdm_dataportal_name_relations_skiptype_basionym'] = array(
|
625 |
|
|
'#type' => 'checkbox',
|
626 |
|
|
'#title' => t('Exclude the basionym relationship type from the taxon page'),
|
627 |
|
|
'#default_value' => variable_get('cdm_dataportal_name_relations_skiptype_basionym', 1),
|
628 |
|
|
'#description' => t('')
|
629 |
|
|
);
|
630 |
|
|
|
631 |
4726aac7
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['layout']['cdm_dataportal_taxonpage_tabs'] = array(
|
632 |
|
|
'#type' => 'checkbox',
|
633 |
1c01d44e
|
Andreas Kohlbecker
|
'#title' => t('Tabbed taxon page'),
|
634 |
4726aac7
|
Andreas Kohlbecker
|
'#default_value' => variable_get('cdm_dataportal_taxonpage_tabs', 1),
|
635 |
24b09d7c
|
Andreas Kohlbecker
|
'#description' => t('Split the taxon page into individual tabs for description, images, synonymy')
|
636 |
d93dad11
|
n.hoffmann
|
);
|
637 |
|
|
|
638 |
|
|
$form['cdm_dataportal']['layout']['cdm_dataportal_search_items_on_page'] = array(
|
639 |
|
|
'#type' => 'textfield',
|
640 |
|
|
'#title' => t('Search Page Size'),
|
641 |
30c5a6bd
|
Andreas Kohlbecker
|
'#default_value' => variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE),
|
642 |
24b09d7c
|
Andreas Kohlbecker
|
'#description' => t('Number of Names to display per page in search results.')
|
643 |
|
|
);
|
644 |
|
|
|
645 |
|
|
$form['cdm_dataportal']['layout']['cdm_dataportal_descriptions_separated'] = array(
|
646 |
|
|
'#type' => 'checkbox',
|
647 |
|
|
'#title' => t('Separate Desriptions'),
|
648 |
|
|
'#default_value' => variable_get('cdm_dataportal_descriptions_separated', 0),
|
649 |
|
|
'#description' => t('By default corresponding elements of different descriptions are joined together'
|
650 |
|
|
.' into a common section per feature (i.e. type of description).'
|
651 |
|
|
.' Check this box to allow displaying all descriptions separately.')
|
652 |
9fcd1980
|
Andreas Kohlbecker
|
);
|
653 |
|
|
|
654 |
70fb5e15
|
Andreas Kohlbecker
|
$options = cdm_rankVocabulary_as_option();
|
655 |
|
|
array_unshift($options, '-- DISABLED --');
|
656 |
|
|
$form['cdm_dataportal']['layout']['image_hide_rank'] = array(
|
657 |
|
|
'#type' => 'select',
|
658 |
|
|
'#title' => t('Hide Images for Taxa above'),
|
659 |
|
|
'#default_value' => variable_get('image_hide_rank', '0'),
|
660 |
|
|
'#options' => $options,
|
661 |
|
|
'#description' => t(''),
|
662 |
|
|
);
|
663 |
|
|
|
664 |
|
|
// --- find taxa ---- //
|
665 |
784a4314
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['layout']['findtaxa'] = array(
|
666 |
|
|
'#type' => 'fieldset',
|
667 |
|
|
'#title' => t('Search Taxa'),
|
668 |
|
|
'#collapsible' => TRUE,
|
669 |
|
|
'#collapsed' => TRUE,
|
670 |
|
|
);
|
671 |
|
|
|
672 |
9834a411
|
Andreas Kohlbecker
|
//variable_get('', 1);
|
673 |
|
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_show_taxon_thumbnails'] = array(
|
674 |
784a4314
|
Andreas Kohlbecker
|
'#type' => 'checkbox',
|
675 |
9834a411
|
Andreas Kohlbecker
|
'#title' => t('Show media thumbnails for accepted taxa'),
|
676 |
|
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_show_taxon_thumbnails', 1),
|
677 |
784a4314
|
Andreas Kohlbecker
|
'#description' => t('')
|
678 |
|
|
);
|
679 |
|
|
|
680 |
9834a411
|
Andreas Kohlbecker
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_show_synonym_thumbnails'] = array(
|
681 |
784a4314
|
Andreas Kohlbecker
|
'#type' => 'checkbox',
|
682 |
8ff851c6
|
Andreas Kohlbecker
|
'#title' => t('Show media thumbnails for synonyms'),
|
683 |
9834a411
|
Andreas Kohlbecker
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_show_synonym_thumbnails', 0),
|
684 |
|
|
'#description' => t('')
|
685 |
|
|
);
|
686 |
|
|
|
687 |
|
|
// $showCaption = variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 0);
|
688 |
|
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_show_thumbnail_captions'] = array(
|
689 |
|
|
'#type' => 'checkbox',
|
690 |
|
|
'#title' => t('Show captions under thumbnails'),
|
691 |
|
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 1),
|
692 |
784a4314
|
Andreas Kohlbecker
|
'#description' => t('')
|
693 |
|
|
);
|
694 |
|
|
|
695 |
|
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_media_maxextend'] = array(
|
696 |
|
|
'#type' => 'textfield',
|
697 |
|
|
'#title' => t('Maximum extend of Images'),
|
698 |
|
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_media_maxextend', 120),
|
699 |
|
|
'#description' => t('')
|
700 |
|
|
);
|
701 |
|
|
|
702 |
|
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_media_cols'] = array(
|
703 |
|
|
'#type' => 'textfield',
|
704 |
|
|
'#title' => t('Number of columns'),
|
705 |
|
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_media_cols', 3),
|
706 |
|
|
'#description' => t('')
|
707 |
|
|
);
|
708 |
|
|
|
709 |
|
|
$form['cdm_dataportal']['layout']['findtaxa']['cdm_dataportal_findtaxa_media_maxRows'] = array(
|
710 |
|
|
'#type' => 'textfield',
|
711 |
|
|
'#title' => t('Maximum number of rows'),
|
712 |
|
|
'#default_value' => variable_get('cdm_dataportal_findtaxa_media_maxRows', 1),
|
713 |
|
|
'#description' => t('')
|
714 |
|
|
);
|
715 |
|
|
|
716 |
|
|
|
717 |
9fcd1980
|
Andreas Kohlbecker
|
|
718 |
e4f58fa1
|
n.hoffmann
|
//---------------- GEOSERVICE ----------------//
|
719 |
|
|
|
720 |
|
|
$form['cdm_dataportal']['geoservice'] = array(
|
721 |
|
|
'#type' => 'fieldset',
|
722 |
|
|
'#title' => t('Geoservice'),
|
723 |
9d98a3c0
|
n.hoffmann
|
'#collapsible' => TRUE,
|
724 |
e4f58fa1
|
n.hoffmann
|
'#collapsed' => TRUE,
|
725 |
784a4314
|
Andreas Kohlbecker
|
);
|
726 |
|
|
|
727 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_map_openlayers'] = array(
|
728 |
|
|
'#type' => 'checkbox',
|
729 |
|
|
'#title' => t('OpenLayers Viewer'),
|
730 |
|
|
'#default_value' => variable_get('cdm_dataportal_map_openlayers', 1),
|
731 |
|
|
'#description' => t('Display the maps in an interactive viewer which allows zooming and panning.')
|
732 |
e4f58fa1
|
n.hoffmann
|
);
|
733 |
|
|
|
734 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_access_point'] = array(
|
735 |
|
|
'#type' => 'textfield',
|
736 |
|
|
'#title' => t('Geoservice Access Point'),
|
737 |
|
|
'#default_value' => variable_get('cdm_dataportal_geoservice_access_point', ''),
|
738 |
|
|
'#description' => t('Base URL of the geoservice to be used by this portal')
|
739 |
|
|
);
|
740 |
|
|
|
741 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_display_width'] = array(
|
742 |
|
|
'#type' => 'textfield',
|
743 |
|
|
'#title' => t('Geoservice Display Width'),
|
744 |
|
|
'#default_value' => variable_get('cdm_dataportal_geoservice_display_width', 390),
|
745 |
|
|
'#description' => t('Width of the image generated by geoservice')
|
746 |
|
|
);
|
747 |
|
|
|
748 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_bounding_box'] = array(
|
749 |
|
|
'#type' => 'textfield',
|
750 |
9d47d187
|
Andreas Kohlbecker
|
'#title' => t('Fixed Geoservice Bounding Box'),
|
751 |
e4f58fa1
|
n.hoffmann
|
'#default_value' => variable_get('cdm_dataportal_geoservice_bounding_box', '-180,-90,180,90'),
|
752 |
9d47d187
|
Andreas Kohlbecker
|
'#description' => t('Define urrounding of area to be displayed in maps. Use "-180,-90,180,90" for the whole world. Leave <strong>empty</strong> to let the map <strong>automatically zoom</strong> to the distribution area.')
|
753 |
9fcd1980
|
Andreas Kohlbecker
|
);
|
754 |
|
|
|
755 |
|
|
//cdm_dataportal_geoservice_labels_on
|
756 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_labels_on'] = array(
|
757 |
|
|
'#type' => 'checkbox',
|
758 |
|
|
'#title' => t('Display Country Labels'),
|
759 |
|
|
'#default_value' => variable_get('cdm_dataportal_geoservice_labels_on', FALSE),
|
760 |
|
|
'#description' => t('Check this if you like country names to be displayed in the maps. ')
|
761 |
2447830d
|
Andreas Kohlbecker
|
);
|
762 |
|
|
|
763 |
|
|
//cdm_dataportal_geoservice_legend_on
|
764 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_legend_on'] = array(
|
765 |
|
|
'#type' => 'checkbox',
|
766 |
|
|
'#title' => t('Display a map legend'),
|
767 |
|
|
'#default_value' => variable_get('cdm_dataportal_geoservice_legend_on', TRUE),
|
768 |
|
|
'#description' => t('Check this if you like a legend to be displayed with the maps. ')
|
769 |
6499563a
|
f.revilla
|
);
|
770 |
|
|
|
771 |
|
|
//cdm_dataportal_geoservice_legend_on
|
772 |
|
|
$form['cdm_dataportal']['geoservice']['cdm_dataportal_geoservice_map_caption'] = array(
|
773 |
|
|
'#type' => 'textfield',
|
774 |
0302b693
|
Andreas Kohlbecker
|
'#title' => t('Map Caption'),
|
775 |
6499563a
|
f.revilla
|
'#default_value' => variable_get('cdm_dataportal_geoservice_map_caption', ''),
|
776 |
0302b693
|
Andreas Kohlbecker
|
'#description' => t('Define a caption for the map.')
|
777 |
e4f58fa1
|
n.hoffmann
|
);
|
778 |
a22e3f38
|
Andreas Kohlbecker
|
|
779 |
e38d39d6
|
Andreas Kohlbecker
|
return system_settings_form($form);
|
780 |
|
|
}
|
781 |
|
|
|
782 |
|
|
/**
|
783 |
|
|
* Implementation of hook_elements().
|
784 |
|
|
*/
|
785 |
|
|
function cdm_dataportal_elements() {
|
786 |
|
|
$type['select_secuuid'] = array(
|
787 |
94112bee
|
n.hoffmann
|
'#input' => TRUE,
|
788 |
e38d39d6
|
Andreas Kohlbecker
|
'#process' => array('cdm_dataportal_select_secuuid_expand' => array()),
|
789 |
|
|
//'#validate' => array('cdm_dataportal_select_secuuid_validate' => array()),
|
790 |
|
|
//'#default_value' => array(),
|
791 |
e18349d4
|
Andreas Kohlbecker
|
);
|
792 |
e38d39d6
|
Andreas Kohlbecker
|
return $type;
|
793 |
|
|
}
|
794 |
|
|
|
795 |
|
|
/*
|
796 |
94112bee
|
n.hoffmann
|
*
|
797 |
e38d39d6
|
Andreas Kohlbecker
|
*/
|
798 |
|
|
function cdm_dataportal_select_secuuid_expand($element){
|
799 |
e18349d4
|
Andreas Kohlbecker
|
|
800 |
e38d39d6
|
Andreas Kohlbecker
|
$element['#tree'] = FALSE;
|
801 |
|
|
|
802 |
|
|
// any value submitted?
|
803 |
|
|
if(isset($element['#post'][$element['#varname']])){
|
804 |
|
|
$selected_values = $element['#post'][$element['#varname']];
|
805 |
|
|
} else {
|
806 |
|
|
// use those store in drupal
|
807 |
|
|
$selected_values = variable_get( $element['#varname'], array());
|
808 |
|
|
}
|
809 |
|
|
if(!is_array($selected_values)){
|
810 |
|
|
$selected_values = array($selected_values);
|
811 |
|
|
}
|
812 |
|
|
$options = array();
|
813 |
|
|
foreach($selected_values as $secUuid){
|
814 |
44e02685
|
Andreas Kohlbecker
|
$options[$secUuid] = cdm_taxontree_secRefTitle_for($secUuid);
|
815 |
e38d39d6
|
Andreas Kohlbecker
|
}
|
816 |
e18349d4
|
Andreas Kohlbecker
|
|
817 |
e38d39d6
|
Andreas Kohlbecker
|
$element[$element['#varname']] = array(
|
818 |
|
|
'#type' => 'select',
|
819 |
|
|
'#options' => $options,
|
820 |
|
|
'#default_value' => array_values($options),
|
821 |
|
|
'#size' => $element['#multiple'] ? 12 : 2,
|
822 |
|
|
'#multiple' => $element['#multiple'],
|
823 |
|
|
);
|
824 |
|
|
return $element;
|
825 |
|
|
}
|
826 |
|
|
|
827 |
|
|
|
828 |
|
|
|
829 |
9cc1a3e2
|
Andreas Kohlbecker
|
/**
|
830 |
|
|
* Displays a list of the known taxonomic names. Long lists are split up into multiple pages
|
831 |
|
|
*
|
832 |
55e5b62d
|
Andreas Kohlbecker
|
* TODO: parameters are still preliminar
|
833 |
9cc1a3e2
|
Andreas Kohlbecker
|
* @param String $page page number to diplay defaults to page 1
|
834 |
|
|
* @param boolean $hide_unaccepted whether to hide nams which are not accepted by the current view
|
835 |
|
|
*/
|
836 |
afbbba9e
|
Andreas Kohlbecker
|
function cdm_dataportal_view_names($beginsWith = 'A', $page = 1, $onlyAccepted = false ){
|
837 |
67a4a4c6
|
Andreas Kohlbecker
|
|
838 |
ee99abea
|
Andreas Kohlbecker
|
$request_params = array(
|
839 |
94112bee
|
n.hoffmann
|
'q' => $beginsWith,
|
840 |
ee99abea
|
Andreas Kohlbecker
|
//'sec' = '',
|
841 |
|
|
//'higherTaxa' => getFiters(),
|
842 |
|
|
// 'matchAnywhere' => false, // default is false
|
843 |
94112bee
|
n.hoffmann
|
'page' => $page,
|
844 |
|
|
'onlyAccepted' => $onlyAccepted,
|
845 |
ee99abea
|
Andreas Kohlbecker
|
'pagesize' => 20 /*$_SESSION['cdm']['namelist_pagesize'] */);
|
846 |
|
|
|
847 |
30c5a6bd
|
Andreas Kohlbecker
|
$taxonPager = cdm_ws_find(CDM_WS_FIND_TAXA, $request_params);
|
848 |
67a4a4c6
|
Andreas Kohlbecker
|
/*
|
849 |
|
|
* FIXME the filter for accepted names will be a form element, thus this widget
|
850 |
|
|
* should be generated via form api preferably as block
|
851 |
|
|
*/
|
852 |
|
|
//$out = theme('cdm_dataportal_widget_filter_accepted', $onlyAccepted);
|
853 |
|
|
//$out .= theme('cdm_dataportal_widget_names_list', $names, $page);
|
854 |
30c5a6bd
|
Andreas Kohlbecker
|
$out .= theme('cdm_listof_taxa', $taxonPager);
|
855 |
67a4a4c6
|
Andreas Kohlbecker
|
return $out;
|
856 |
9cc1a3e2
|
Andreas Kohlbecker
|
}
|
857 |
|
|
|
858 |
4726aac7
|
Andreas Kohlbecker
|
function cdm_dataportal_view_reference($uuid, $arg2 = null){
|
859 |
30c5a6bd
|
Andreas Kohlbecker
|
$reference = cdm_ws_get(CDM_WS_REFERENCE, $uuid);
|
860 |
|
|
return theme('cdm_reference_page', $reference);
|
861 |
4726aac7
|
Andreas Kohlbecker
|
}
|
862 |
|
|
|
863 |
46a52efe
|
Andreas Kohlbecker
|
function cdm_dataportal_view_reference_list($pageNumber){
|
864 |
30c5a6bd
|
Andreas Kohlbecker
|
$referencePager = cdm_ws_page(CDM_WS_REFERENCE, variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE), $pageNumber);
|
865 |
46a52efe
|
Andreas Kohlbecker
|
return theme('cdm_reference_pager', $referencePager, 'cdm_dataportal/reference/list/');
|
866 |
|
|
}
|
867 |
|
|
|
868 |
b09e63fd
|
Andreas Kohlbecker
|
function cdm_dataportal_view_media($mediaUuid, $mediarepresentation_uuid = false, $part = 0){
|
869 |
5424c3b5
|
f.revilla
|
$media = cdm_ws_get(CDM_WS_MEDIA, $mediaUuid);
|
870 |
b09e63fd
|
Andreas Kohlbecker
|
return theme('cdm_media_page', $media, $mediarepresentation_uuid, $part);
|
871 |
2cd9a3d6
|
Andreas Kohlbecker
|
}
|
872 |
|
|
|
873 |
9cc1a3e2
|
Andreas Kohlbecker
|
/**
|
874 |
|
|
* The taxon page gives detailed information on a taxon, it shows:
|
875 |
|
|
* - Taxon name
|
876 |
67a4a4c6
|
Andreas Kohlbecker
|
* - Full list of synonyms homotypic synonyms on top, followed by the
|
877 |
|
|
* heterotypic and finally followed by misapplied names.
|
878 |
afbbba9e
|
Andreas Kohlbecker
|
* The list is ordered historically.
|
879 |
8ff851c6
|
Andreas Kohlbecker
|
* - All description associated with the taxon.
|
880 |
9cc1a3e2
|
Andreas Kohlbecker
|
*
|
881 |
8ff851c6
|
Andreas Kohlbecker
|
* @param $uuid
|
882 |
|
|
* @param $chapter name of the part to display,
|
883 |
|
|
* valid values are: 'description', 'images', 'synonymy', 'all'
|
884 |
|
|
* @return unknown_type
|
885 |
9cc1a3e2
|
Andreas Kohlbecker
|
*/
|
886 |
8ff851c6
|
Andreas Kohlbecker
|
function cdm_dataportal_taxon_page_view($uuid, $chapter = 'all'){
|
887 |
53a13220
|
Andreas Kohlbecker
|
|
888 |
|
|
// display the page for the taxon defined by $uuid
|
889 |
8ff851c6
|
Andreas Kohlbecker
|
$taxonpage = cdm_dataportal_taxon_view($uuid, $chapter);
|
890 |
|
|
return cdm_node_show(NODETYPE_TAXON, $uuid, $taxonpage->title , $taxonpage->content);
|
891 |
|
|
}
|
892 |
|
|
|
893 |
|
|
/**
|
894 |
|
|
* @param $uuid
|
895 |
|
|
* @param $chapter name of the part to display,
|
896 |
|
|
* valid values are: 'description', 'images', 'synonymy', 'all'
|
897 |
|
|
* @return unknown_type
|
898 |
|
|
*/
|
899 |
|
|
function cdm_dataportal_taxon_view($uuid, $chapter = 'all'){
|
900 |
|
|
|
901 |
30c5a6bd
|
Andreas Kohlbecker
|
$taxon = cdm_ws_get(CDM_WS_TAXON, $uuid);
|
902 |
|
|
if(!$taxon){
|
903 |
a27e2588
|
Andreas Kohlbecker
|
drupal_set_title(t('Taxon does not exist'));
|
904 |
94112bee
|
n.hoffmann
|
return false;
|
905 |
a27e2588
|
Andreas Kohlbecker
|
}
|
906 |
30c5a6bd
|
Andreas Kohlbecker
|
_cdm_dataportal_set_currentSecUuid($taxon->sec->uuid);
|
907 |
72568f3e
|
Andreas Kohlbecker
|
|
908 |
8ff851c6
|
Andreas Kohlbecker
|
$taxonpage->title = theme('cdm_taxon_page_title', $taxon);
|
909 |
|
|
$taxonpage->content = theme('cdm_taxon_page_general', $taxon, $chapter);
|
910 |
|
|
|
911 |
|
|
return $taxonpage;
|
912 |
53a13220
|
Andreas Kohlbecker
|
}
|
913 |
67a4a4c6
|
Andreas Kohlbecker
|
|
914 |
8ff851c6
|
Andreas Kohlbecker
|
|
915 |
2447830d
|
Andreas Kohlbecker
|
function cdm_dataportal_view_search_advanced(){
|
916 |
|
|
|
917 |
|
|
drupal_set_title(t('Advanced Search'));
|
918 |
|
|
|
919 |
|
|
$searchForm = cdm_dataportal_search_taxon_form(true);
|
920 |
|
|
|
921 |
|
|
return drupal_get_form('cdm_dataportal_search_taxon_form_advanced');
|
922 |
|
|
|
923 |
|
|
}
|
924 |
|
|
|
925 |
ee99abea
|
Andreas Kohlbecker
|
/**
|
926 |
94112bee
|
n.hoffmann
|
*
|
927 |
ee99abea
|
Andreas Kohlbecker
|
* future extensions to meet palmweb mockup requirements:
|
928 |
|
|
* - habitat
|
929 |
|
|
* - uses
|
930 |
|
|
* - conservation status
|
931 |
|
|
* - locality / tdwg region
|
932 |
|
|
*/
|
933 |
24b09d7c
|
Andreas Kohlbecker
|
function cdm_dataportal_view_search_taxon(){
|
934 |
|
|
|
935 |
64c1bd2d
|
n.hoffmann
|
$_SESSION['cdm']['last_search'] = $_SERVER['REQUEST_URI'];
|
936 |
daba333b
|
Andreas Kohlbecker
|
|
937 |
6611904c
|
Andreas Kohlbecker
|
$request_params = cdm_dataportal_search_form_request();
|
938 |
8934f97c
|
Andreas Kohlbecker
|
$taxonPager = cdm_ws_get(CDM_WS_FIND_TAXA, null, queryString($request_params));
|
939 |
24b09d7c
|
Andreas Kohlbecker
|
|
940 |
daba333b
|
Andreas Kohlbecker
|
$search_params = $_REQUEST;
|
941 |
|
|
unset($search_params['q']);
|
942 |
|
|
return theme('cdm_search_results', $taxonPager, 'cdm_dataportal/search/taxon', $search_params);
|
943 |
ee99abea
|
Andreas Kohlbecker
|
}
|
944 |
|
|
|
945 |
05fe0ad6
|
Andreas Kohlbecker
|
function cdm_view_xml2json(){
|
946 |
|
|
$file = arg(2);
|
947 |
|
|
$datastr = get_content(variable_get('cdm_webservice_url', '').$file);
|
948 |
|
|
return xml2json::transformXmlStringToJson($datastr);
|
949 |
fa97cd20
|
Andreas Kohlbecker
|
}
|
950 |
|
|
|
951 |
47a8c0dd
|
Andreas Kohlbecker
|
/* ====================== other functions ====================== */
|
952 |
|
|
|
953 |
ec0c70d2
|
Andreas Kohlbecker
|
/**
|
954 |
|
|
* Enter description here...
|
955 |
|
|
*
|
956 |
|
|
* @param String $uuid the UUID of the taxon
|
957 |
|
|
* @return the URL
|
958 |
|
|
*/
|
959 |
24b09d7c
|
Andreas Kohlbecker
|
function path_to_taxon($uuid){
|
960 |
|
|
if(!$uuid) return false;
|
961 |
ec0c70d2
|
Andreas Kohlbecker
|
return 'cdm_dataportal/taxon/'.$uuid;
|
962 |
ad497c90
|
Andreas Kohlbecker
|
}
|
963 |
|
|
|
964 |
24b09d7c
|
Andreas Kohlbecker
|
function path_to_reference($uuid){
|
965 |
|
|
if(!$uuid) return false;
|
966 |
|
|
return 'cdm_dataportal/reference/'.$uuid;
|
967 |
|
|
}
|
968 |
|
|
|
969 |
b09e63fd
|
Andreas Kohlbecker
|
function path_to_media($uuid, $representaion_uuid = false, $partId = false){
|
970 |
2cd9a3d6
|
Andreas Kohlbecker
|
if(!$uuid) return false;
|
971 |
b09e63fd
|
Andreas Kohlbecker
|
$out = 'cdm_dataportal/media/'.$uuid;
|
972 |
|
|
if($representaion_uuid){
|
973 |
|
|
$out .= '/'.$representaion_uuid;
|
974 |
|
|
if($partId !== false){
|
975 |
|
|
$out .= '/'.$partId;
|
976 |
|
|
}
|
977 |
|
|
}
|
978 |
|
|
return $out;
|
979 |
2cd9a3d6
|
Andreas Kohlbecker
|
}
|
980 |
|
|
|
981 |
70fb5e15
|
Andreas Kohlbecker
|
/**
|
982 |
|
|
* Compares thisRank with thatRank.
|
983 |
|
|
* Returns a negative integer, zero, or a positive integer
|
984 |
|
|
* as the of thisRank is higher than, equal to, or lower than thatRank.
|
985 |
|
|
* e.g:
|
986 |
|
|
* <ul>
|
987 |
|
|
* <li>rank_compare({species_uuid}, {genus_uuid}) = -1</li>
|
988 |
|
|
* <li>rank_compare({genus_uuid}, {genus_uuid}) = 0</li>
|
989 |
|
|
* <li>rank_compare({genus_uuid}, {tribus_uuid}) = 1</li>
|
990 |
|
|
* </ul>
|
991 |
|
|
* <p>
|
992 |
|
|
* This compare logic of the underlying webservice is the
|
993 |
|
|
* <b>inverse logic</b> of the the one implemented in
|
994 |
|
|
* java.lang.Comparable#compareTo(java.lang.Object)
|
995 |
|
|
* @param $thisRankUuid
|
996 |
|
|
* @param $thatRankUuid
|
997 |
|
|
* @return a negative integer, zero, or a positive integer
|
998 |
|
|
* as the thisRank is lower than, equal to, or higher than thatRank
|
999 |
|
|
*/
|
1000 |
|
|
function rank_compare($thisRankUuid, $thatRankUuid){
|
1001 |
|
|
$result = cdm_ws_get(CDM_WS_TERM_COMPARE, array($thisRankUuid, $thatRankUuid));
|
1002 |
|
|
return $result->Integer;
|
1003 |
|
|
}
|
1004 |
|
|
|
1005 |
24b09d7c
|
Andreas Kohlbecker
|
function uri_to_synonym($synonymUuid, $acceptedUuid, $pagePart = null){
|
1006 |
|
|
$acceptedPath = path_to_taxon($acceptedUuid);
|
1007 |
|
|
return url($acceptedPath.($pagePart ? '/'.$pagePart : ''), 'highlite='.$synonymUuid.'&acceptedFor='.$synonymUuid);
|
1008 |
|
|
}
|
1009 |
|
|
|
1010 |
ec0c70d2
|
Andreas Kohlbecker
|
/**
|
1011 |
|
|
* Creates a short taxonname by using the taggename field of NameSTO or NameTO instances.
|
1012 |
|
|
* If the taggename if empty the fullname will be returned.
|
1013 |
|
|
*
|
1014 |
30c5a6bd
|
Andreas Kohlbecker
|
* @param unknown_type $Name or TreeNode
|
1015 |
67a4a4c6
|
Andreas Kohlbecker
|
* @return string
|
1016 |
ec0c70d2
|
Andreas Kohlbecker
|
*/
|
1017 |
30c5a6bd
|
Andreas Kohlbecker
|
function cdm_dataportal_shortname_of($name){
|
1018 |
67a4a4c6
|
Andreas Kohlbecker
|
|
1019 |
30c5a6bd
|
Andreas Kohlbecker
|
$nameStr = '';
|
1020 |
fa68c2c5
|
Andreas Kohlbecker
|
// get all tagged text tokens of the scientific name
|
1021 |
30c5a6bd
|
Andreas Kohlbecker
|
foreach($name->taggedTitle as $tagtxt){
|
1022 |
fa68c2c5
|
Andreas Kohlbecker
|
if($tagtxt->type == 'name' || $tagtxt->type == 'rank'){
|
1023 |
30c5a6bd
|
Andreas Kohlbecker
|
$nameStr .= ($nameStr ? ' ' : '').$tagtxt->text;
|
1024 |
fa68c2c5
|
Andreas Kohlbecker
|
}
|
1025 |
|
|
}
|
1026 |
30c5a6bd
|
Andreas Kohlbecker
|
$nameStr = trim($nameStr);
|
1027 |
|
|
if($nameStr){
|
1028 |
bd4696a1
|
n.hoffmann
|
// do not return short names for these
|
1029 |
30c5a6bd
|
Andreas Kohlbecker
|
if($nameStr == 'Incertae sedis' || $nameStr == 'Nomina excludenda'){
|
1030 |
|
|
return $nameStr;
|
1031 |
bd4696a1
|
n.hoffmann
|
}
|
1032 |
30c5a6bd
|
Andreas Kohlbecker
|
if($pos = stripos($nameStr, ' ')){
|
1033 |
|
|
return substr($nameStr, 0, 1).'. '.substr($nameStr, $pos);
|
1034 |
ec0c70d2
|
Andreas Kohlbecker
|
} else {
|
1035 |
30c5a6bd
|
Andreas Kohlbecker
|
return $nameStr;
|
1036 |
ec0c70d2
|
Andreas Kohlbecker
|
}
|
1037 |
|
|
} else {
|
1038 |
30c5a6bd
|
Andreas Kohlbecker
|
return $name->titleCache;
|
1039 |
ec0c70d2
|
Andreas Kohlbecker
|
}
|
1040 |
|
|
}
|
1041 |
47a8c0dd
|
Andreas Kohlbecker
|
|
1042 |
af7422cb
|
n.hoffmann
|
/**
|
1043 |
|
|
* TODO Add Comments. I don't get what
|
1044 |
|
|
*
|
1045 |
44e02685
|
Andreas Kohlbecker
|
* @param UUID $secUuid
|
1046 |
67a4a4c6
|
Andreas Kohlbecker
|
*/
|
1047 |
27c1d8ec
|
Andreas Kohlbecker
|
function _cdm_dataportal_set_currentSecUuid($secUuid){
|
1048 |
5ab248ac
|
Andreas Kohlbecker
|
|
1049 |
0d127818
|
Andreas Kohlbecker
|
// do not save in session but in database
|
1050 |
af7422cb
|
n.hoffmann
|
|
1051 |
|
|
if(is_array($secUuid)){
|
1052 |
|
|
$secUuid = $secUuid[0];
|
1053 |
|
|
}
|
1054 |
|
|
if(!$secUuid){
|
1055 |
|
|
variable_set('cdm_currentSecRef', null);
|
1056 |
|
|
} else {
|
1057 |
30c5a6bd
|
Andreas Kohlbecker
|
$secRef = cdm_ws_get(CDM_WS_REFERENCE, $secUuid);
|
1058 |
24b09d7c
|
Andreas Kohlbecker
|
if(isset($secRef)){
|
1059 |
|
|
variable_set('cdm_currentSecRef', (array)($secRef));
|
1060 |
af7422cb
|
n.hoffmann
|
}
|
1061 |
|
|
}
|
1062 |
|
|
|
1063 |
27c1d8ec
|
Andreas Kohlbecker
|
}
|
1064 |
|
|
|
1065 |
af7422cb
|
n.hoffmann
|
/**
|
1066 |
|
|
* TODO
|
1067 |
|
|
* This will not work with multiple instances of the dataportal running
|
1068 |
|
|
* under the same host as there is only one session for all instances.
|
1069 |
|
|
* In case you switch instances with the same client, you will definitely
|
1070 |
|
|
* run into trouble.
|
1071 |
|
|
* Also this is not handling multiple secs.
|
1072 |
|
|
*
|
1073 |
|
|
*
|
1074 |
24b09d7c
|
Andreas Kohlbecker
|
* returns the current secRef array.
|
1075 |
27c1d8ec
|
Andreas Kohlbecker
|
* If the according session variable is not jet set the default
|
1076 |
812a9c04
|
Andreas Kohlbecker
|
* as configured in the setting is used otherwise null.
|
1077 |
94112bee
|
n.hoffmann
|
*
|
1078 |
f5b3d74e
|
Andreas Kohlbecker
|
* currentSecRef['uuid']
|
1079 |
|
|
* currentSecRef[....
|
1080 |
27c1d8ec
|
Andreas Kohlbecker
|
*
|
1081 |
|
|
* @return array
|
1082 |
|
|
*/
|
1083 |
1dbc28d9
|
Andreas Kohlbecker
|
function _cdm_dataportal_currentSecRef_array(){
|
1084 |
24b09d7c
|
Andreas Kohlbecker
|
|
1085 |
3cf0dec2
|
Andreas Kohlbecker
|
// do not look in session but in database
|
1086 |
24b09d7c
|
Andreas Kohlbecker
|
if( variable_get('cdm_currentSecRef', null) == null){
|
1087 |
af7422cb
|
n.hoffmann
|
$secUuid = variable_get('cdm_secUuid_default', null);
|
1088 |
|
|
_cdm_dataportal_set_currentSecUuid($secUuid);
|
1089 |
|
|
}
|
1090 |
|
|
return variable_get('cdm_currentSecRef', null);
|
1091 |
|
|
|
1092 |
67a4a4c6
|
Andreas Kohlbecker
|
}
|
1093 |
d93dad11
|
n.hoffmann
|
|
1094 |
|
|
/**
|
1095 |
9ee2882b
|
Andreas Kohlbecker
|
* Check if a taxon is accepted by the current taxonomic tree
|
1096 |
d93dad11
|
n.hoffmann
|
*
|
1097 |
9ee2882b
|
Andreas Kohlbecker
|
* @param Taxon $taxon
|
1098 |
|
|
* @return true if $taxon is accepted, false otherwise
|
1099 |
d93dad11
|
n.hoffmann
|
*/
|
1100 |
9ee2882b
|
Andreas Kohlbecker
|
|
1101 |
30c5a6bd
|
Andreas Kohlbecker
|
function _cdm_dataportal_acceptedByCurrentView($taxon){
|
1102 |
81df545f
|
Andreas Kohlbecker
|
|
1103 |
9ee2882b
|
Andreas Kohlbecker
|
//$current_secref = _cdm_dataportal_currentSecRef_array();
|
1104 |
|
|
$defaultTreeUuid = variable_get('cdm_taxonomictree_uuid', false);
|
1105 |
|
|
if($taxon->class == "Taxon" && isset($taxon->taxonNodes)){
|
1106 |
|
|
foreach($taxon->taxonNodes as $node){
|
1107 |
|
|
if($node->taxonomicTree == $defaultTreeUuid) {
|
1108 |
|
|
return true;
|
1109 |
|
|
}
|
1110 |
|
|
}
|
1111 |
|
|
}
|
1112 |
|
|
return false;
|
1113 |
81df545f
|
Andreas Kohlbecker
|
}
|
1114 |
44e02685
|
Andreas Kohlbecker
|
|
1115 |
daba333b
|
Andreas Kohlbecker
|
/**@Deprecated
|
1116 |
|
|
*
|
1117 |
|
|
*/
|
1118 |
|
|
function compose_url_prameterstr($parameters = array(), $parentPropertyName = false){
|
1119 |
cacc1bbf
|
Andreas Kohlbecker
|
$pstr = '';
|
1120 |
|
|
foreach($parameters as $key=>$value){
|
1121 |
daba333b
|
Andreas Kohlbecker
|
if(is_array($value)){
|
1122 |
|
|
|
1123 |
|
|
} else {
|
1124 |
|
|
$pstr .= ($pstr ? '&' :'').$key.'='.urlencode($value);
|
1125 |
|
|
}
|
1126 |
cacc1bbf
|
Andreas Kohlbecker
|
}
|
1127 |
|
|
return $pstr;
|
1128 |
d93dad11
|
n.hoffmann
|
}
|
1129 |
|
|
|
1130 |
|
|
function _get_feature_trees(){
|
1131 |
|
|
$feature_trees = array();
|
1132 |
|
|
|
1133 |
|
|
// set tree that contains all features
|
1134 |
|
|
$feature_trees['0'] = 'No FeatureTree';
|
1135 |
|
|
|
1136 |
30c5a6bd
|
Andreas Kohlbecker
|
// get features from database
|
1137 |
24b09d7c
|
Andreas Kohlbecker
|
$persisted_trees = cdm_ws_get(CDM_WS_FEATURETREES);
|
1138 |
d93dad11
|
n.hoffmann
|
if(is_array($persisted_trees)){
|
1139 |
|
|
foreach($persisted_trees as $featureTree){
|
1140 |
|
|
|
1141 |
|
|
$featureLabels = array();
|
1142 |
24b09d7c
|
Andreas Kohlbecker
|
foreach ($featureTree->root->children as $featureNode){
|
1143 |
30c5a6bd
|
Andreas Kohlbecker
|
$featureLabels[] = $featureNode->feature->representation_L10n;
|
1144 |
d93dad11
|
n.hoffmann
|
}
|
1145 |
|
|
|
1146 |
|
|
$feature_trees[$featureTree->uuid] = implode(", ", $featureLabels);
|
1147 |
|
|
|
1148 |
|
|
}
|
1149 |
|
|
}
|
1150 |
|
|
return $feature_trees;
|
1151 |
cacc1bbf
|
Andreas Kohlbecker
|
}
|
1152 |
6f4dd14a
|
Andreas Kohlbecker
|
|
1153 |
24b09d7c
|
Andreas Kohlbecker
|
|
1154 |
|
|
function get_nameRenderTemplate($renderPath, $nameLink = NULL, $refenceLink = NULL){
|
1155 |
|
|
//TODO implement admin user interface to replace swicth statement
|
1156 |
|
|
// preliminar solution: using themes
|
1157 |
|
|
|
1158 |
|
|
$template = theme('get_nameRenderTemplate', $renderPath);
|
1159 |
|
|
|
1160 |
|
|
if(!is_array($template)){
|
1161 |
|
|
switch($renderPath){
|
1162 |
|
|
case 'list_of_taxa':
|
1163 |
|
|
case 'acceptedFor':
|
1164 |
|
|
case 'taxon_page_synonymy':
|
1165 |
|
|
case 'typedesignations':
|
1166 |
|
|
case 'taxon_page_title':
|
1167 |
|
|
case 'na': $template = array(
|
1168 |
8a60c8fc
|
Andreas Kohlbecker
|
'namePart' => array('#uri'=>true),
|
1169 |
24b09d7c
|
Andreas Kohlbecker
|
//'authorshipPart' => true,
|
1170 |
|
|
);
|
1171 |
|
|
break;
|
1172 |
|
|
case 'nar': $template = array(
|
1173 |
8a60c8fc
|
Andreas Kohlbecker
|
'namePart' => array('#uri'=>true),
|
1174 |
24b09d7c
|
Andreas Kohlbecker
|
//'authorshipPart' => true,
|
1175 |
8a60c8fc
|
Andreas Kohlbecker
|
'referencePart' => array('#uri'=>true),
|
1176 |
24b09d7c
|
Andreas Kohlbecker
|
'microreferencePart' => true,
|
1177 |
|
|
);
|
1178 |
|
|
break;
|
1179 |
|
|
default: $template = array(
|
1180 |
8a60c8fc
|
Andreas Kohlbecker
|
'namePart' => array('#uri'=>true),
|
1181 |
24b09d7c
|
Andreas Kohlbecker
|
'authorshipPart' => true,
|
1182 |
8a60c8fc
|
Andreas Kohlbecker
|
'referencePart' => array('#uri'=>true),
|
1183 |
24b09d7c
|
Andreas Kohlbecker
|
'microreferencePart' => true,
|
1184 |
|
|
'statusPart' => true,
|
1185 |
|
|
'descriptionPart' => true
|
1186 |
|
|
);
|
1187 |
|
|
}
|
1188 |
|
|
}
|
1189 |
70fb5e15
|
Andreas Kohlbecker
|
|
1190 |
|
|
if($nameLink && isset($template['nameAuthorPart']['#uri'])){
|
1191 |
|
|
$template['nameAuthorPart']['#uri'] = $nameLink;
|
1192 |
|
|
} else{
|
1193 |
|
|
unset($template['nameAuthorPart']['#uri']);
|
1194 |
|
|
}
|
1195 |
|
|
|
1196 |
8a60c8fc
|
Andreas Kohlbecker
|
if($nameLink && isset($template['namePart']['#uri'])){
|
1197 |
|
|
$template['namePart']['#uri'] = $nameLink;
|
1198 |
|
|
} else{
|
1199 |
|
|
unset($template['namePart']['#uri']);
|
1200 |
24b09d7c
|
Andreas Kohlbecker
|
}
|
1201 |
70fb5e15
|
Andreas Kohlbecker
|
|
1202 |
8a60c8fc
|
Andreas Kohlbecker
|
if($refenceLink && isset($template['referencePart']['#uri'])){
|
1203 |
|
|
$template['referencePart']['#uri'] = $refenceLink;
|
1204 |
|
|
}else{
|
1205 |
|
|
unset($template['referencePart']['#uri']);
|
1206 |
24b09d7c
|
Andreas Kohlbecker
|
}
|
1207 |
70fb5e15
|
Andreas Kohlbecker
|
|
1208 |
24b09d7c
|
Andreas Kohlbecker
|
return $template;
|
1209 |
|
|
}
|
1210 |
|
|
|
1211 |
|
|
function get_partDefinition($taxonNameType){
|
1212 |
|
|
//TODO implement admin user interface to allow specify the partdefinitions for any type
|
1213 |
|
|
// preliminar solution: using themes
|
1214 |
|
|
|
1215 |
|
|
$partdef = theme('get_partDefinition', $taxonNameType);
|
1216 |
|
|
|
1217 |
|
|
if(!is_array($partdef)){
|
1218 |
|
|
switch($taxonNameType){
|
1219 |
|
|
case 'ZoologicalName': $partdef = array(
|
1220 |
|
|
'namePart' => array(
|
1221 |
|
|
'name' => true,
|
1222 |
|
|
),
|
1223 |
|
|
'referencePart' => array(
|
1224 |
|
|
'authorTeam' => true
|
1225 |
|
|
),
|
1226 |
|
|
'microreferencePart' => array(
|
1227 |
|
|
'microreference' => true,
|
1228 |
|
|
),
|
1229 |
|
|
'statusPart' => array(
|
1230 |
|
|
'status' => true,
|
1231 |
|
|
),
|
1232 |
|
|
'descriptionPart' => array(
|
1233 |
|
|
'description' => true,
|
1234 |
|
|
),
|
1235 |
|
|
);
|
1236 |
|
|
break;
|
1237 |
|
|
case 'BotanicalName': $partdef = array(
|
1238 |
|
|
'namePart' => array(
|
1239 |
|
|
'name' => true
|
1240 |
|
|
),
|
1241 |
|
|
'authorTeamPart' => array(
|
1242 |
|
|
'authorTeam' => true,
|
1243 |
|
|
),
|
1244 |
|
|
'referencePart' => array(
|
1245 |
|
|
'reference' => true
|
1246 |
|
|
),
|
1247 |
|
|
'microreferencePart' => array(
|
1248 |
|
|
'microreference' => true,
|
1249 |
|
|
),
|
1250 |
|
|
'statusPart' => array(
|
1251 |
|
|
'status' => true,
|
1252 |
|
|
),
|
1253 |
|
|
'descriptionPart' => array(
|
1254 |
|
|
'description' => true,
|
1255 |
|
|
),
|
1256 |
|
|
);
|
1257 |
|
|
break;
|
1258 |
|
|
default: $partdef = array(
|
1259 |
|
|
'namePart' => array(
|
1260 |
|
|
'name' => true,
|
1261 |
|
|
),
|
1262 |
|
|
'authorTeamPart' => array(
|
1263 |
|
|
'authorTeam' => true,
|
1264 |
|
|
),
|
1265 |
|
|
'referencePart' => array(
|
1266 |
|
|
'reference' => true
|
1267 |
|
|
),
|
1268 |
|
|
'microreferencePart' => array(
|
1269 |
|
|
'microreference' => true,
|
1270 |
|
|
),
|
1271 |
|
|
'statusPart' => array(
|
1272 |
|
|
'status' => true,
|
1273 |
|
|
),
|
1274 |
|
|
'descriptionPart' => array(
|
1275 |
|
|
'description' => true,
|
1276 |
|
|
),
|
1277 |
|
|
);
|
1278 |
|
|
}
|
1279 |
|
|
}
|
1280 |
|
|
return $partdef;
|
1281 |
|
|
}
|
1282 |
46edbba8
|
f.revilla
|
|
1283 |
|
|
/**
|
1284 |
|
|
*
|
1285 |
|
|
* @param $media
|
1286 |
|
|
* @param $priority
|
1287 |
|
|
* @return unknown_type
|
1288 |
|
|
* TODO rename to read_media_metadata() and move to *.module
|
1289 |
|
|
*/
|
1290 |
|
|
function cdm_read_media_metadata($media, $priority = 1){
|
1291 |
|
|
|
1292 |
|
|
$metadata_caption = array('title' => '',
|
1293 |
|
|
'artist' => '',
|
1294 |
|
|
'rights',
|
1295 |
|
|
'location',
|
1296 |
|
|
'filename' => '',
|
1297 |
|
|
'mediacreated' => '',
|
1298 |
|
|
'description' => '');
|
1299 |
|
|
|
1300 |
|
|
//getting the media metadata
|
1301 |
|
|
$media_metadata = cdm_ws_get(CDM_WS_MEDIA_METADATA, array($media->uuid));
|
1302 |
|
|
|
1303 |
|
|
//filling the title, artist, copyright depending on the priority 1=>files 2=>CDM
|
1304 |
|
|
switch($priority){
|
1305 |
|
|
case 1:
|
1306 |
|
|
//filling the title
|
1307 |
|
|
if ($media_metadata->Headline)
|
1308 |
|
|
$metadata_caption['title'] = $media_metadata->Headline;
|
1309 |
|
|
elseif ($media->titleCache){
|
1310 |
|
|
$metadata_caption['title'] = $media->titleCache;
|
1311 |
|
|
if ($media->description_L10n)
|
1312 |
|
|
$metadata_caption['title'] .= ' - ' . $media->description_L10n;
|
1313 |
|
|
}
|
1314 |
|
|
|
1315 |
|
|
//filling the artist
|
1316 |
|
|
if ($media_metadata->Artist)
|
1317 |
|
|
$metadata_caption['artist'] = ($media_metadata->Artist ? ''.$media_metadata->Artist : '');
|
1318 |
|
|
elseif ($media->artist->titleCache)
|
1319 |
|
|
$metadata_caption['artist'] = $media->artist->titleCache;
|
1320 |
|
|
|
1321 |
|
|
//filling out with the copyright info
|
1322 |
|
|
$metadata_caption['rights'] = array('copyright' => array('agentNames' => array()),
|
1323 |
|
|
'license' => array('agentNames' => array(), 'types' => array(), 'abbreviatedTexts' => array(), 'uris' => array()));
|
1324 |
|
|
if ($media_metadata->Copyright)
|
1325 |
|
|
$metadata_caption['rights']['copyright']['agentNames'][] = $media_metadata->Copyright;
|
1326 |
|
|
elseif ($media->rights){
|
1327 |
|
|
foreach($media->rights as $right){
|
1328 |
|
|
switch($right->term->uuid){
|
1329 |
|
|
case UUID_RIGHTS_LICENCE:
|
1330 |
|
|
$metadata_caption['rights']['license']['agentNames'][] = ($right->agent ? ''.$right->agent->firstname.' '.$right->agent->lastname : '');
|
1331 |
|
|
$metadata_caption['rights']['license']['types'][] = ($right->representation_L10n ? ''.$right->representation_L10n : '');
|
1332 |
|
|
$metadata_caption['rights']['license']['abbreviatedTexts'][] = ($right->abbreviatedText ? ''.$right->abbreviatedText : '');
|
1333 |
|
|
$metadata_caption['rights']['license']['uris'][] = ($right->uri ? ''.$right->uri : '');
|
1334 |
|
|
break;
|
1335 |
|
|
case UUID_RIGHTS_COPYRIGHT:
|
1336 |
|
|
$metadata_caption['rights']['copyright']['agentNames'][] = $right->agent->firstname . ' ' . $right->agent->lastname;
|
1337 |
|
|
break;
|
1338 |
|
|
}
|
1339 |
|
|
}
|
1340 |
|
|
}
|
1341 |
|
|
else
|
1342 |
|
|
$metadata_caption['rights']['agentNames'][] = '';
|
1343 |
|
|
|
1344 |
|
|
break;
|
1345 |
|
|
|
1346 |
|
|
case 2:
|
1347 |
|
|
//filling the title
|
1348 |
|
|
if ($media->titleCache){
|
1349 |
|
|
$metadata_caption['title'] = $media->titleCache;
|
1350 |
|
|
if ($media->description_L10n)
|
1351 |
|
|
$metadata_caption['title'] .= ' - ' . $media->description_L10n;
|
1352 |
|
|
}
|
1353 |
|
|
elseif ($media_metadata->Headline)
|
1354 |
|
|
$metadata_caption['title'] = $media_metadata->Headline;
|
1355 |
|
|
break;
|
1356 |
|
|
}
|
1357 |
|
|
//filling the description (though there is no description in the db???)
|
1358 |
|
|
$metadata_caption['description'] = $media->description_L10n;
|
1359 |
|
|
|
1360 |
|
|
//filling the location
|
1361 |
|
|
$metadata_caption['location'] = array();
|
1362 |
|
|
$metadata_caption['location']['sublocation'] = $media_metadata->Sublocation;
|
1363 |
|
|
$metadata_caption['location']['city'] = $media_metadata->City;
|
1364 |
|
|
$metadata_caption['location']['province'] = $media_metadata->Province;
|
1365 |
|
|
$metadata_caption['location']['country'] = $media_metadata->Country;
|
1366 |
|
|
|
1367 |
|
|
|
1368 |
|
|
//filling the filename
|
1369 |
|
|
if(isset($media->representations[0]->parts[0]->uri)){
|
1370 |
|
|
$fileUri = $media->representations[0]->parts[0]->uri;
|
1371 |
|
|
$filename = substr($fileUri, strrpos($fileUri, "/")+1);
|
1372 |
|
|
$metadata_caption['filename'] = $filename;
|
1373 |
|
|
}
|
1374 |
|
|
else
|
1375 |
|
|
$metadata_caption['filename'] = '';
|
1376 |
|
|
|
1377 |
|
|
//filling the creation date
|
1378 |
|
|
$metadata_caption['mediacreated'] = $media->created;
|
1379 |
|
|
|
1380 |
|
|
//returned value
|
1381 |
|
|
return $metadata_caption;
|
1382 |
|
|
}
|