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<?php
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/**
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* @file
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* Functions for dealing with CDM entities from the package model.common
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*
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* @author
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* - Andreas Kohlbecker <a.kohlbecker@BGBM.org>
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*/
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/**
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* @defgroup compose Compose functions
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* @{
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* Functions which are composing Drupal render arays
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*
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* The cdm_dataportal module needs to compose rather complex render arrays from
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* the data returned by the CDM REST service. The compose functions are
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* responsible for creating the render arrays.
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*
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* All these functions are also implementations of the compose_hook()
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* which is used in the proxy_content() function.
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* @}
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*/
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/**
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* Compose an render array from a CDM Marker object.
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*
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* compose_hook() implementation
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*
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* @param object $marker
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* CDM instance of type Marker
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* @return array
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* A drupal render array
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*
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* @ingroup compose
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*/
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function compose_cdm_marker($marker) {
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$render_array = array(
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// ---- generic
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// these entries should be common to all cdm enitiy render arrays
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'#theme' => 'cdm_marker', // TODO add alternative theme funcitons: 'cdm_marker_' . marker.type.label
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'#attributes' => array('class' => html_class_attribute_ref($marker)),
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// ---- individual
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'#label' => $marker->markerType->representation_L10n . ': ' . (($marker->flag !== TRUE ? t('yes') : t('no'))),
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);
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return $render_array;
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}
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/**
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* Checks if the given $cdm_entitiy has a marker the type references by the
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* $marker_type_uuid and returns TRUE if a matching marker has been found.
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*
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* @param object $cdm_entitiy A CDM Entity
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* @param string $marker_type_uuid
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*/
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function cdm_entity_has_marker($cdm_entitiy, $marker_type_uuid) {
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if(isset($cdm_entitiy->markers[0]) && !is_uuid($marker_type_uuid)){
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foreach ($cdm_entitiy->markers as $marker) {
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if(isset($marker->markerType) && $marker->markerType->uuid == $marker_type_uuid){
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return TRUE;
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}
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}
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}
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return FALSE;
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}
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/**
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* Sorts an array of CDM IdentifiableSource instances by 1. by the
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* author teams family names and 2. by the publication date.
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*
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* @param array $sources
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* The array of CDM IdentifiableSource instances
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* @return array
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* An array of drupal render arrays
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*/
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function oder_and_render_original_sources($sources){
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$sort_array = array();
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foreach ($sources as $source) {
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$order_key = '';
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// find the familynames
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if(isset($source->citation->uuid) && !isset($source->citation->authorship)){
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$authorteam = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $source->citation->uuid);
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$persons = array();
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if($authorteam->class == 'Team'){
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if(isset($authorteam->teamMembers)){
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$persons = $authorteam->teamMembers;
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}
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} else {
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$persons[] = $authorteam;
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}
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foreach($persons as $person){
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if(!empty($person->lastname)){
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$order_key .= $person->lastname;
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} else {
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$order_key .= $person->titleCache;
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}
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}
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if(empty($order_key)){
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$order_key = $authorteam->titleCache;
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}
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}
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$order_key = str_pad($order_key, 50);
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// add publication date to the key
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if(isset($source->citation->datePublished)){
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$order_key .= '_' . timePeriodAsOrderKey($source->citation->datePublished);
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} else {
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$order_key .= '_' . "0000";
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}
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// padd key until unique
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while(array_key_exists($order_key, $sort_array)){
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$order_key .= "_";
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}
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$sort_array[$order_key] = render_original_source($source);
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}
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ksort($sort_array);
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return array_values ($sort_array);
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}
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/**
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* Compare callback to be used in usort to sort image sources of CDM OriginalSource instances.
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*
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* TODO the compare strategy implemented in oder_and_render_original_sources() is probably better but is not taking the
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* originalName into account.
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*
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* @param $a
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* @param $b
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*/
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function compare_original_sources($a, $b){
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$a_string = '';
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if(isset($a->citation->titleCache)) {
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$a_string = $a->citation->titleCache;
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}
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if((isset($a->nameUsedInSource))){
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$a_string .= $a->nameUsedInSource->titleCache;
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} elseif (isset($a->originalNameString)){
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$a_string .= $a->originalNameString;
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}
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$b_string = '';
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if(isset($b->citation->titleCache)) {
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$b_string = $b->citation->titleCache;
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};
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if((isset($b->nameUsedInSource))){
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$b_string .= $b->nameUsedInSource->titleCache;
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} elseif (isset($b->originalNameString)){
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$b_string .= $b->originalNameString;
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}
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if ($a_string == $b_string) {
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return 0;
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}
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return ($a_string < $b_string) ? -1 : 1;
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}
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/**
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* Compare callback to be used in usort to sort image sources of CDM Media instances.
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*
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* @param $a
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* @param $b
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*/
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function compare_text_data($a, $b) {
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if ($a->multilanguageText_L10n->text == $b->multilanguageText_L10n->text) {
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return 0;
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}
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return ($a->multilanguageText_L10n->text < $b->multilanguageText_L10n->text) ? -1 : 1;
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}
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/**
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* Compare two different footnotes objects.
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*
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* The comparison is based on the footnote key. The one which is
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* displayed as footnote number.
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*
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* @param mixed $a
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* Footnote object $a.
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* @param mixed $b
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* Footnote object $b.
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*/
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function footnotes_key_compare($a, $b) {
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$res = 0;
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if (empty($a) || empty($b)) {
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return $res;
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}
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if ($a->keyStr < $b->keyStr) {
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$res = -1;
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}
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elseif ($a->keyStr > $b->keyStr) {
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$res = 1;
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}
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return $res;
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}
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/**
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* Creates an array suitable to be used in min_max_markup()
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*
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* @return array
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*/
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function min_max_array()
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{
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// FIXME use UUIDs instead? how about idInVocab?
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$min_max = array(
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'Extreme Min' => NULL,
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'Min' => NULL,
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'Average' => NULL,
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'Max' => NULL,
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'Extreme Max' => NULL,
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);
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return $min_max;
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}
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/**
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* Creates markup from a min max array.
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*
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* NOTE: use min_max_array() to create an appropriate array
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*
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* @param $min_max
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* the min-max array
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* @param $unit
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* Defaults to no unit
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* @return string
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*/
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function min_max_markup($min_max, $unit = '') {
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$min_max_markup = '';
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// create min-max string
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if ($min_max['Min'] !== NULL && $min_max['Max'] !== NULL && $min_max['Min']->_value == $min_max['Max']->_value) {
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// min and max are identical
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$min_max['Average'] = $min_max['Min'];
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$min_max['Min'] = NULL;
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$min_max['Max'] = NULL;
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}
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// check for inconsistent cases, eg. only Max and average given
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if ($min_max['Min'] === NULL && $min_max['Max'] !== NULL) {
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// min missing
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$min_max['Min'] = '?';
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}
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if ($min_max['Min'] !== NULL && $min_max['Max'] === NULL) {
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// max missing
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$min_max['Max'] = '?';
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}
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foreach ($min_max as $key => $statistical_val) {
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if ($statistical_val !== NULL) {
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if ($statistical_val == '?') {
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$val_markup = $statistical_val;
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} else {
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$val_markup = '<span class="'
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. html_class_attribute_ref($statistical_val) . ' '
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. (isset($statistical_val->type) ? $statistical_val->type->termType : '') . ' ">'
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. $statistical_val->_value . '</span>';
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}
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if (strlen($min_max_markup)) {
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$min_max_markup .= '–';
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}
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if (str_beginsWith($key, 'Extreme')) {
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$val_markup = "($val_markup)";
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}
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$min_max_markup .= $val_markup;
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}
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}
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return $min_max_markup . ' ' . $unit;
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}
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/**
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* Creates min max markup to represent a min-average-max measure optionally with an error value.
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*
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* The fields that are taken into account are:
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* - field_base_name = min
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* - field_base_nameMax = max
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* - field_base_nameText = free text
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* - field_base_nameError = error value
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*
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* @param $object
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* The object having min max measurement fields
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* @param string $field_base_name
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* The base name for all measurement fields. This name is at the same time the full name of the
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* min value.
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* @return string
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* The markup for the min max
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*/
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function min_max_measure($object, $field_base_name)
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{
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static $default_unit = 'm';
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$field_name = $field_base_name . 'Text';
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if (@is_string($object->$field_name)) {
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// Freetext overrides all other data
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$min_max_markup = ' ' . $object->$field_name;
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} else {
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// create markup for the atomized min max data
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$min_max_array = min_max_array();
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if (@is_numeric($object->$field_base_name)) {
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$min_max_array['Min'] = new stdClass();
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$min_max_array['Min']->_value = $object->$field_base_name;
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}
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$field_name = $field_base_name . 'Max';
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if (@is_numeric($object->$field_name)) {
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$min_max_array['Max'] = new stdClass();
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$min_max_array['Max']->_value = $object->$field_name;
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}
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$min_max_markup = min_max_markup($min_max_array, $default_unit);
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}
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329
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return $min_max_markup;
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}
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332
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333
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// TODO move below code into new file: agent.inc
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334
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335
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/*
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336
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* Compose an render array from a CDM TaxonNodeAgentRelation object as Taxon Expert.
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337
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*
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338
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* compose_hook() implementation
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339
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*
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340
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* @param object $taxon_node_agent_relation
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341
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* CDM instance of type TaxonNodeAgentRelation
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* @return array
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343
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* A drupal render array
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344
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*
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345
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* @ingroup compose
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346
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*/
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347
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function compose_cdm_taxon_expert($taxon_node_agent_relation) {
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348
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349
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$label_suffix = ':';
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350
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351
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if($taxon_node_agent_relation->class == 'DefaultPagerImpl'){
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352
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// oops this is a pager
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353
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// this situation will occur when this compose is executed
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// through the proxy_content() method
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$taxon_node_agent_relation = $taxon_node_agent_relation->records[0];
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}
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359
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if(is_object($taxon_node_agent_relation->agent)) {
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$agent_details = compose_cdm_team_or_person_base($taxon_node_agent_relation->agent);
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361
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// all data will be added to the groups of the agent_details render array
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362
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$groups = &$agent_details[0]['#groups'];
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363
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364
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@_description_list_group_add($groups, t('Role'). $label_suffix, $taxon_node_agent_relation->type->representation_L10n);
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365
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366
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$family_tnars = cdm_ws_fetch_all(CDM_WS_PORTAL_AGENT . '/' . $taxon_node_agent_relation->agent->uuid . '/taxonNodeAgentRelations', array("rank"=>"Familia"));
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367
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368
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$taxa_markup = array(
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369
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'#theme_wrappers' => array('container'),
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'#attributes' => array('class' => array('managed_taxa')),
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371
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'#wrapper_attributes' => array('class' => 'sublist-container')
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);
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373
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foreach($family_tnars as $tnar){
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374
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if(is_object($tnar->taxonNode->taxon)){
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375
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$taxa_markup[$tnar->taxonNode->taxon->titleCache] = markup_to_render_array(render_taxon_or_name($tnar->taxonNode->taxon, url(path_to_taxon($tnar->taxonNode->taxon->uuid))));
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}
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377
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}
|
|
378
|
ksort($taxa_markup);
|
|
379
|
|
|
380
|
@_description_list_group_add($groups, t('Families'). $label_suffix, array($taxa_markup));
|
|
381
|
|
|
382
|
}
|
|
383
|
|
|
384
|
return $agent_details;
|
|
385
|
}
|
|
386
|
|
|
387
|
|
|
388
|
/*
|
|
389
|
* Compose an render array from a CDM TeamOrPersonBase object.
|
|
390
|
*
|
|
391
|
* compose_hook() implementation
|
|
392
|
*
|
|
393
|
* TODO: currently mainly implemented for Agent, add Team details
|
|
394
|
*
|
|
395
|
* @param object $team_or_person
|
|
396
|
* CDM instance of type TeamOrPersonBase
|
|
397
|
* @return array
|
|
398
|
* A drupal render array
|
|
399
|
*
|
|
400
|
* @ingroup compose
|
|
401
|
*/
|
|
402
|
function compose_cdm_team_or_person_base($team_or_person, $data = array()) {
|
|
403
|
|
|
404
|
$groups = array();
|
|
405
|
|
|
406
|
$label_suffix = ':';
|
|
407
|
|
|
408
|
// $weight = 0;
|
|
409
|
if($team_or_person){
|
|
410
|
|
|
411
|
if(is_object($team_or_person->lifespan)){
|
|
412
|
// ToDo render as date* - date† ?
|
|
413
|
@_description_list_group_add($groups, t('Lifespan'). $label_suffix, timePeriodToString($team_or_person->lifespan) /*, '' , $weight++ */);
|
|
414
|
}
|
|
415
|
|
|
416
|
// nomenclaturalTitle
|
|
417
|
@_description_list_group_add($groups, "Nomenclatural Title". $label_suffix, $team_or_person->nomenclaturalTitle);
|
|
418
|
// collectorTitle
|
|
419
|
@_description_list_group_add($groups, "Collector Title". $label_suffix, $team_or_person->collectorTitle);
|
|
420
|
|
|
421
|
// institutionalMemberships
|
|
422
|
if(is_array($team_or_person->institutionalMemberships)){
|
|
423
|
|
|
424
|
$institutes_ra = array();
|
|
425
|
foreach($team_or_person->institutionalMemberships as $membership) {
|
|
426
|
$membership_groups = array();
|
|
427
|
@_description_list_group_add($membership_groups, t('Department'). $label_suffix, $membership->department);
|
|
428
|
@_description_list_group_add($membership_groups, t('Role'). $label_suffix, $membership->role);
|
|
429
|
if(is_object($membership->period)){
|
|
430
|
@_description_list_group_add($membership_groups, t('Period'). $label_suffix, timePeriodToString($membership->period));
|
|
431
|
}
|
|
432
|
if(is_object($membership->institute->contact)){
|
|
433
|
$institute_contact_details = compose_cdm_contact($membership->institute->contact, $membership->institute->titleCache);
|
|
434
|
if(is_array($institute_contact_details[0]['#groups'])){
|
|
435
|
$membership_groups = array_merge($membership_groups, $institute_contact_details[0]['#groups']);
|
|
436
|
}
|
|
437
|
}
|
|
438
|
if(count($membership_groups) > 0){
|
|
439
|
$institutes_ra[] = array(
|
|
440
|
'#title' => $membership->institute->titleCache,
|
|
441
|
'#theme' => 'description_list',
|
|
442
|
'#groups' => $membership_groups,
|
|
443
|
'#attributes' => array('class' => html_class_attribute_ref($membership)),
|
|
444
|
'#wrapper_attributes' => array('class' => 'sublist-container')
|
|
445
|
);
|
|
446
|
} else {
|
|
447
|
// no further details for the membership, display the title
|
|
448
|
$institutes_ra[] = markup_to_render_array('<h3>' . $membership->institute->titleCache . '</h3>');
|
|
449
|
}
|
|
450
|
|
|
451
|
}
|
|
452
|
|
|
453
|
$label = count($institutes_ra) > 1 ? t('Institutes'): t('Institute');
|
|
454
|
@_description_list_group_add($groups, $label. $label_suffix, $institutes_ra /*, '' , $weight++ */);
|
|
455
|
}
|
|
456
|
|
|
457
|
|
|
458
|
// Contact
|
|
459
|
$agent_contact_details = compose_cdm_contact($team_or_person->contact, $team_or_person->titleCache);
|
|
460
|
if(is_array($agent_contact_details[0]['#groups'])){
|
|
461
|
$groups = array_merge($groups, $agent_contact_details[0]['#groups']);
|
|
462
|
}
|
|
463
|
|
|
464
|
// additional data
|
|
465
|
foreach($data as $key=>$value){
|
|
466
|
@_description_list_group_add($sub_dl_groups, t('@key', array('@key' => $key)), $value /*, '' , $weight++ */);
|
|
467
|
}
|
|
468
|
|
|
469
|
}
|
|
470
|
|
|
471
|
$team_or_person_details = array(
|
|
472
|
'#title' => $team_or_person->titleCache,
|
|
473
|
'#theme' => 'description_list',
|
|
474
|
'#groups' => $groups,
|
|
475
|
'#attributes' => array('class' => html_class_attribute_ref($team_or_person)),
|
|
476
|
);
|
|
477
|
return array($team_or_person_details);
|
|
478
|
}
|
|
479
|
|
|
480
|
|
|
481
|
/*
|
|
482
|
* Compose an render array from a CDM Contact object.
|
|
483
|
*
|
|
484
|
* compose_hook() implementation
|
|
485
|
*
|
|
486
|
* TODO: currently mainly implemented for Agent, add Team details
|
|
487
|
*
|
|
488
|
* @param object $contact
|
|
489
|
* CDM instance of type Contact
|
|
490
|
* @param $title
|
|
491
|
* The title for the description list header
|
|
492
|
* @param $weight
|
|
493
|
* Optional weight for the description list entries
|
|
494
|
* @return array
|
|
495
|
* A drupal render array
|
|
496
|
*
|
|
497
|
* @ingroup compose
|
|
498
|
*/
|
|
499
|
function compose_cdm_contact($contact, $title, $weight = 0)
|
|
500
|
{
|
|
501
|
|
|
502
|
$groups = array();
|
|
503
|
|
|
504
|
$contact_details = null;
|
|
505
|
|
|
506
|
$label_suffix = ':';
|
|
507
|
|
|
508
|
$contact_field_names_map = array(
|
|
509
|
'emailAddresses' => t('Email'),
|
|
510
|
'urls' => t('Urls'),
|
|
511
|
'phoneNumbers' => t('Phone'),
|
|
512
|
'faxNumbers' => t('Fax'),
|
|
513
|
);
|
|
514
|
|
|
515
|
// Contact
|
|
516
|
if(is_object($contact)){
|
|
517
|
if(isset($contact->addresses)){
|
|
518
|
// TODO ....
|
|
519
|
// $sub_groups = array();
|
|
520
|
// foreach($contact->addresses as $address){
|
|
521
|
// @_description_list_group_add($sub_groups, $label, $contact->$fieldName, '', $weight++);
|
|
522
|
// }
|
|
523
|
}
|
|
524
|
foreach($contact_field_names_map as $fieldName => $label){
|
|
525
|
if(is_array($contact->$fieldName)){
|
|
526
|
@_description_list_group_add($groups, $label . $label_suffix, $contact->$fieldName, '', $weight++);
|
|
527
|
}
|
|
528
|
}
|
|
529
|
$contact_details = array(
|
|
530
|
'#title' => $title,
|
|
531
|
'#theme' => 'description_list',
|
|
532
|
'#groups' => $groups
|
|
533
|
);
|
|
534
|
|
|
535
|
|
|
536
|
} else if(is_string($title)) {
|
|
537
|
// if the contact entity is empty but the title is given anyway
|
|
538
|
// we are only adding the title, using the description_list
|
|
539
|
// structure is not possible since it would be empty due to
|
|
540
|
// missing group data
|
|
541
|
$contact_details = array('#markup' => '<h3>' . $title . '</h3>');
|
|
542
|
}
|
|
543
|
|
|
544
|
return array($contact_details);
|
|
545
|
|
|
546
|
}
|
|
547
|
|
|
548
|
/**
|
|
549
|
* Compose an render array from a CDM Extension objects.
|
|
550
|
*
|
|
551
|
* @param $extensions
|
|
552
|
* An array of CDM Extension objects
|
|
553
|
* @return array
|
|
554
|
* A render array containing the fields of the supplied $sequence
|
|
555
|
*
|
|
556
|
* @ingroup compose
|
|
557
|
*/
|
|
558
|
function compose_extensions($extensions)
|
|
559
|
{
|
|
560
|
$extensions_render_array= null;
|
|
561
|
$extensions_by_type = array();
|
|
562
|
foreach ($extensions as $extension) {
|
|
563
|
if (@is_string($extension->value)) {
|
|
564
|
if (!isset($extensions_by_type[$extension->type->representation_L10n])) {
|
|
565
|
$extensions_by_type[$extension->type->representation_L10n] = array();
|
|
566
|
}
|
|
567
|
$extensions_by_type[$extension->type->representation_L10n][] = markup_to_render_array($extension->value);
|
|
568
|
}
|
|
569
|
}
|
|
570
|
|
|
571
|
if (count($extensions_by_type)) {
|
|
572
|
$sub_dl_groups = array();
|
|
573
|
foreach ($extensions_by_type as $type_label => $text_list) {
|
|
574
|
@_description_list_group_add($sub_dl_groups, $type_label . ':', $text_list);
|
|
575
|
}
|
|
576
|
$extensions_render_array = array(
|
|
577
|
array('#theme' => 'description_list', '#groups' => $sub_dl_groups)
|
|
578
|
);
|
|
579
|
return $extensions_render_array;
|
|
580
|
}
|
|
581
|
return $extensions_render_array;
|
|
582
|
}
|
|
583
|
|
|
584
|
function formatParams($params) {
|
|
585
|
if (is_array($params)){
|
|
586
|
$keys =array_keys($params);
|
|
587
|
$paramString = '';
|
|
588
|
foreach ($keys as $k ){
|
|
589
|
if ($k != 'pageNumber' && $k != 'pageSize'){
|
|
590
|
$paramString .= ' -'.$k.'='.urlencode($params[$k]);
|
|
591
|
}
|
|
592
|
}
|
|
593
|
}
|
|
594
|
return $paramString;
|
|
595
|
}
|
|
596
|
|
|
597
|
function formatWSParams($params) {
|
|
598
|
if (is_array($params)){
|
|
599
|
$keys =array_keys($params);
|
|
600
|
$paramString = '';
|
|
601
|
foreach ($keys as $k ){
|
|
602
|
if ($k != 'pageNumber' && $k != 'pageSize'){
|
|
603
|
$paramString .= '&'.$k.'='.urlencode($params[$k]);
|
|
604
|
}
|
|
605
|
}
|
|
606
|
}
|
|
607
|
return $paramString;
|
|
608
|
}
|
|
609
|
|