EDIT

<?php

/**

 * Overrides of generic themeing functions in cdm_datportal.theme.php

 */

/**

 * @param NameTO $nameTO

 * @return taxon name without author and nomencaltural reference

 */

function garland_cichorieae_cdm_taxon_page_title($nameTO){

  return theme('cdm_name', $nameTO, false, false, false, false);

}

/**

 * The description page is supposed to be the front page for a taxon.

 *

 * @param TaxonTO $taxonTO

 * @return

 */

function garland_cichorieae_cdm_taxon_page_description($taxonTO){

  // preferred image

  // hardcoded for testing

  $defaultPreferredImage = drupal_get_path('theme', 'garland_cichorieae').'/images/nopic.jpg';

  $out = theme('cdm_preferredImage', $taxonTO, $defaultPreferredImage, '&width=333&height=220&quality=95&format=jpeg');

  // description TOC

  $out .= theme('cdm_featureTreeToc', $taxonTO->featureTree);

  // descriptions

  $out .= theme('cdm_featureTree', $taxonTO->featureTree);

  return $out;

}

function garland_cichorieae_cdm_taxon_page_images($taxonTO){

  $descriptions = $taxonTO->featureTree->descriptions;

  foreach($descriptions as $descriptionTo){

    $features = $descriptionTo->features;

    foreach($features as $featureTo){

      print($featureTo->feature->term.',');

      if($featureTo->feature->term == 'Image'){

        $flashLink = true;

        break;        

      }

    }

  }

  if($flashLink){

    $taggedName = $taxonTO->name->taggedName;

    $nameArray = array();

    foreach($taggedName as $taggedText){

      if($taggedText->type == 'name'){

        $nameArray[] = $taggedText->text;

      }

    }

    $query = join("%5F", $nameArray) . '%20AND%20jpg';

  $out = '

  <script type="text/javascript" src="http://media.bgbm.org/erez/js/fsiwriter.js"></script>

<script type="text/javascript">

<!--

	writeFlashCode( "http://media.bgbm.org/erez/fsi/fsi.swf?&cfg=showcase_presets/showcase_info.fsi&effects=%26quality%3D95&showcase_query='.$query.'&skin=silver&showcase_labeltextheight=50&textbox_textfrom=IPTC_WP6&textbox_height=50&param_backgroundcolor=454343&publishwmode=opaque&showcase_hscroll=true&showcase_basecolor=454343&plugins=PrintSave,textbox",

		"http://media.bgbm.org/erez/erez?src=erez-private/flashrequired.svg&tmp=Large&quality=97&width=470&height=400",

		"width=470;height=400;bgcolor=454343;wmode=opaque");

// -->

</script>

<noscript>

	<object classid="clsid:D27CDB6E-AE6D-11cf-96B8-444553540000" codebase="http://download.macromedia.com/pub/shockwave/cabs/flash/swflash.cab#version=6,0,65,0" width="470" height="400">

		<param name="movie" value="http://media.bgbm.org/erez/fsi/fsi.swf?&cfg=showcase_presets/showcase_info.fsi&effects=%26quality%3D95&showcase_query='.$query.'&skin=silver&showcase_labeltextheight=50&textbox_textfrom=IPTC_WP6&textbox_height=50&param_backgroundcolor=454343&publishwmode=opaque&showcase_hscroll=true&showcase_basecolor=454343plugins=PrintSave,textbox"/>

		<param name="bgcolor" value="454343" />

		<param name="wmode" value="opaque" />

		<param name="allowscriptaccess" value="always" />

		<param name="allowfullscreen" value="true" />

		<param name="quality" value="high" />

		<embed src="http://media.bgbm.org/erez/fsi/fsi.swf?&cfg=showcase_presets/showcase_info.fsi&effects=%26quality%3D95&showcase_query='.$query.'&skin=silver&showcase_labeltextheight=50&textbox_textfrom=IPTC_WP6&textbox_height=50&param_backgroundcolor=454343&publishwmode=opaque&showcase_hscroll=true&showcase_basecolor=454343plugins=PrintSave,textbox"

			width="470"

			height="400"

			bgcolor="454343"

			wmode="opaque"

			allowscriptaccess="always"

			allowfullscreen="true"

			quality="high"

			type="application/x-shockwave-flash"

			pluginspage="http://www.adobe.com/go/getflashplayer">

		</embed>

	</object>

</noscript>';

  }else{

    $out = 'No images available.';

  }

  return $out;

}

/**

 * @overrides theme_cdm_taggedtext2html in order to replace t.infr and t.infgen. with '[unranked]'

 */

function garland_cichorieae_cdm_taggedtext2html(array &$taggedtxt, $tag = 'span', $glue = ' ', $skiptags = array()){

   $out = '';

   $i = 0;

   foreach($taggedtxt as $tt){

     if(!in_array($tt->type, $skiptags) && strlen($tt->text) > 0){

      $out .= (strlen($out) > 0 && ++$i < count($taggedtxt)? $glue : '').'<'.$tag.' class="'.$tt->type.'">';

      if($tt->type == "rank" && ($tt->text == "t.infr." || $tt->text == "t.infgen.")){

        $out .= t('[unranked]');

      }else{

        $out .= t($tt->text);

      }

      $out .= '</'.$tag.'>';

     }

   }

   return $out;

}

function garland_cichorieae_cdm_descriptionElementArray($elementArray, $feature, $glue = '', $sortArray = false, $enclosingHtml = 'ul'){

  $out = '<div class="description" id="'.$feature.'">';

  if($sortArray) sort($elementArray);

  $out .= join($elementArray, $glue);

  $out .= '</div>';

  return $out;

}

/* #### exact duplicate of theme method in cdm_dataportal.theme.php ###

 *  

function garland_cichorieae_cdm_descriptionElementTextData($element){

  $description = str_replace("\n", "<br/>", $element->description);

  return '<p class="descriptionText">' . $description . '</p>';

}*/

/***** GARLAND OVERRIDES ******/

/**

 * Sets the body-tag class attribute.

 *

 * Adds 'sidebar-left', 'sidebar-right' or 'sidebars' classes as needed.

 */

function phptemplate_body_class($sidebar_left, $sidebar_right) {

  if ($sidebar_left != '' && $sidebar_right != '') {

    $class = 'sidebars';

  }

  else {

    if ($sidebar_left != '') {

      $class = 'sidebar-left';

    }

    if ($sidebar_right != '') {

      $class = 'sidebar-right';

    }

  }

  if (isset($class)) {

    print ' class="'. $class .'"';

  }

}

/**

 * Return a themed breadcrumb trail.

 *

 * @param $breadcrumb

 *   An array containing the breadcrumb links.

 * @return a string containing the breadcrumb output.

 */

function phptemplate_breadcrumb($breadcrumb) {

  if (!empty($breadcrumb)) {

    return '<div class="breadcrumb">'. implode(' › ', $breadcrumb) .'</div>';

  }

}

/**

 * Allow themable wrapping of all comments.

 */

function phptemplate_comment_wrapper($content, $type = null) {

  static $node_type;

  if (isset($type)) $node_type = $type;

  if (!$content || $node_type == 'forum') {

    return '<div id="comments">'. $content . '</div>';

  }

  else {

    return '<div id="comments"><h2 class="comments">'. t('Comments') .'</h2>'. $content .'</div>';

  }

}

/**

 * Override or insert PHPTemplate variables into the templates.

 */

function _phptemplate_variables($hook, $vars) {

  if ($hook == 'page') {

    if ($secondary = menu_secondary_local_tasks()) {

      $output = '<span class="clear"></span>';

      $output .= "<ul class=\"tabs secondary\">\n". $secondary ."</ul>\n";

      $vars['tabs2'] = $output;

    }

    // Hook into color.module

    if (module_exists('color')) {

      _color_page_alter($vars);

    }

    return $vars;

  }

  return array();

}

/**

 * Returns the rendered local tasks. The default implementation renders

 * them as tabs.

 *

 * @ingroup themeable

 */

function phptemplate_menu_local_tasks() {

  $output = '';

  if ($primary = menu_primary_local_tasks()) {

    $output .= "<ul class=\"tabs primary\">\n". $primary ."</ul>\n";

  }

  return $output;

}