jenkins [Wed, 25 Jan 2017 09:23:35 +0000 (10:23 +0100)]
Merge branch 'hotfix/4.5.1' into develop
Katja Luther [Wed, 25 Jan 2017 08:07:34 +0000 (09:07 +0100)]
remove private source path
Andreas Kohlbecker [Tue, 24 Jan 2017 15:02:08 +0000 (16:02 +0100)]
Merge branch 'develop' into hotfix/4.5.1
Conflicts:
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.application/pom.xml
eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.bulkeditor/pom.xml
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.cdmlib/build.properties
eu.etaxonomy.taxeditor.cdmlib/pom.xml
eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.editor/pom.xml
eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml
eu.etaxonomy.taxeditor.feature.jre.linux64/pom.xml
eu.etaxonomy.taxeditor.feature.platform/feature.xml
eu.etaxonomy.taxeditor.feature.platform/pom.xml
eu.etaxonomy.taxeditor.feature/feature.xml
eu.etaxonomy.taxeditor.feature/pom.xml
eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.help/pom.xml
eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.molecular.lib/pom.xml
eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.molecular/pom.xml
eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.navigation/pom.xml
eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.printpublisher/pom.xml
eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.store/pom.xml
eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.webapp/pom.xml
eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product
eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre
eu.etaxonomy.taxeditor/pom.xml
pom.xml
jenkins [Tue, 24 Jan 2017 14:52:57 +0000 (15:52 +0100)]
Updated version in pom / project files to taxeditor version : 4.5.1 and cdmlib version : 4.5.1
Katja Luther [Tue, 24 Jan 2017 13:10:08 +0000 (14:10 +0100)]
fix #6376: remove markAsDelete for merged items in bulk editor
Patrick Plitzner [Mon, 23 Jan 2017 14:19:15 +0000 (15:19 +0100)]
Correctly set default values for EntitySelectionElements
Patrick Plitzner [Mon, 23 Jan 2017 11:58:03 +0000 (12:58 +0100)]
Fix LibrAlign dependencies
Patrick Plitzner [Mon, 23 Jan 2017 11:49:40 +0000 (12:49 +0100)]
Merge branch 'develop' into LibrAlign
Patrick Plitzner [Mon, 23 Jan 2017 10:28:48 +0000 (11:28 +0100)]
ref #5488 Do not abbreviate terms by default
b.stoever [Fri, 20 Jan 2017 12:16:27 +0000 (13:16 +0100)]
LibrAlign dependency version updated.
Katja Luther [Fri, 20 Jan 2017 09:38:39 +0000 (10:38 +0100)]
check for id==0 before try to delete the media
jenkins [Thu, 19 Jan 2017 11:14:39 +0000 (12:14 +0100)]
Merge branch 'release/4.5.0' into develop
jenkins [Thu, 19 Jan 2017 11:14:37 +0000 (12:14 +0100)]
Merge branch 'release/4.5.0'
jenkins [Thu, 19 Jan 2017 10:54:40 +0000 (11:54 +0100)]
Updated version in pom / project files to taxeditor version : 4.6.0-SNAPSHOT and cdmlib version : 4.6.0-SNAPSHOT
jenkins [Thu, 19 Jan 2017 10:54:35 +0000 (11:54 +0100)]
Updated version in pom / project files to taxeditor version : 4.5.0 and cdmlib version : 4.5.0
Katja Luther [Thu, 19 Jan 2017 10:44:16 +0000 (11:44 +0100)]
missed to add some selection dialogs with last commit
Katja Luther [Thu, 19 Jan 2017 09:39:41 +0000 (10:39 +0100)]
fix #6342: fix exception when using ? in selection dialog
Andreas Müller [Wed, 18 Jan 2017 22:35:16 +0000 (23:35 +0100)]
ref #5474 other -> others
Patrick Plitzner [Wed, 18 Jan 2017 16:54:12 +0000 (17:54 +0100)]
ref #5714 Fix ordering of source types
- order by key instead of message
- always have either taxonomic or media source as first and the other
as second
Patrick Plitzner [Wed, 18 Jan 2017 15:23:01 +0000 (16:23 +0100)]
ref #6283 Fixed potential NPE for EntitySelectionElement
- refactored constructors to always initialise the clazz variable
Patrick Plitzner [Wed, 18 Jan 2017 13:49:48 +0000 (14:49 +0100)]
fix #5496 Refactor preference pages to use TermType
b.stoever [Wed, 18 Jan 2017 10:08:20 +0000 (11:08 +0100)]
TIC dependecy version updated.
Patrick Plitzner [Wed, 18 Jan 2017 08:28:54 +0000 (09:28 +0100)]
ref #6333 Remove framework for exchanging an element in the details view
- This is against the concept of the DetailsView just showing an
element which you can edit. Changing the element requires the
DetailsView to know where the element comes from
Patrick Plitzner [Wed, 18 Jan 2017 08:16:01 +0000 (09:16 +0100)]
ref #6333 Add generic support for entity collection sections to allow
adding existing entities
- this is done by two abstract methods allowAddExisting() and
addExisting()
Andreas Müller [Tue, 17 Jan 2017 22:42:10 +0000 (23:42 +0100)]
ref #6307 remove cdmserver/ from contextpath
Andreas Müller [Tue, 17 Jan 2017 22:29:55 +0000 (23:29 +0100)]
ref #5922 Change order in supplemental data view (cont.)
Katja Luther [Tue, 17 Jan 2017 10:57:44 +0000 (11:57 +0100)]
minor
Katja Luther [Tue, 17 Jan 2017 10:56:14 +0000 (11:56 +0100)]
fix #6334: unsaved description needs to be removed from the taxon
Katja Luther [Tue, 17 Jan 2017 10:52:49 +0000 (11:52 +0100)]
add missing changes
Katja Luther [Tue, 17 Jan 2017 10:46:35 +0000 (11:46 +0100)]
minor
Katja Luther [Tue, 17 Jan 2017 09:59:43 +0000 (10:59 +0100)]
fix #5365: add delete configuration to media view
b.stoever [Fri, 13 Jan 2017 15:50:27 +0000 (16:50 +0100)]
Removed double reference to TIC in molecular.lib.
Patrick Plitzner [Fri, 13 Jan 2017 15:35:17 +0000 (16:35 +0100)]
remove unused bin.include
Patrick Plitzner [Fri, 13 Jan 2017 15:02:43 +0000 (16:02 +0100)]
Saving files before refreshing line endings
Patrick Plitzner [Fri, 13 Jan 2017 14:32:31 +0000 (15:32 +0100)]
Merge branch 'develop' into LibrAlign
b.stoever [Fri, 13 Jan 2017 14:11:20 +0000 (15:11 +0100)]
Alternative versions for build.properties added. Current state set to "dependencies from JARs". (Can be merged to trunk in this state.)
Patrick Plitzner [Fri, 13 Jan 2017 12:51:58 +0000 (13:51 +0100)]
ref #5495 always empty details view when there is no active editor
providing a selection
b.stoever [Fri, 13 Jan 2017 12:33:36 +0000 (13:33 +0100)]
pom.xml and MANIFEST.MF updated in molecular.lib.
b.stoever [Fri, 13 Jan 2017 11:08:26 +0000 (12:08 +0100)]
Adjustments to project structure changes in JPhyloIO.
Patrick Plitzner [Fri, 13 Jan 2017 08:25:09 +0000 (09:25 +0100)]
ref #6158 Add missing git clone command to doc
Patrick Plitzner [Thu, 12 Jan 2017 16:48:11 +0000 (17:48 +0100)]
fix #6158 updated taxeditor installation documentation
Andreas Müller [Thu, 12 Jan 2017 22:57:40 +0000 (23:57 +0100)]
fix #5922 Move extensions section down
Andreas Müller [Thu, 12 Jan 2017 22:56:58 +0000 (23:56 +0100)]
cleanup
Katja Luther [Thu, 12 Jan 2017 15:49:28 +0000 (16:49 +0100)]
fix #5671: add filter element for selection dialog
Patrick Plitzner [Tue, 10 Jan 2017 15:45:06 +0000 (16:45 +0100)]
ref #6320 show pherogram title cache in single read label
Patrick Plitzner [Tue, 10 Jan 2017 15:25:07 +0000 (16:25 +0100)]
Fix icon for media derivative
Patrick Plitzner [Tue, 10 Jan 2017 14:06:19 +0000 (15:06 +0100)]
fix #6307 Show contextPath in error log
Patrick Plitzner [Tue, 10 Jan 2017 13:39:14 +0000 (14:39 +0100)]
Removed unused import
Katja Luther [Tue, 10 Jan 2017 12:57:43 +0000 (13:57 +0100)]
fix #4246: move insert node and create new key node to one menu item with submenu
Patrick Plitzner [Fri, 6 Jan 2017 15:40:11 +0000 (16:40 +0100)]
fix #5488 show only zoological nomenclatural status types not for
botanical names
- also dis some refactoring
Patrick Plitzner [Fri, 6 Jan 2017 14:49:36 +0000 (15:49 +0100)]
fix #5495 DetailsView is emptied when upon context stop i.e. when the
connection is shut down
Patrick Plitzner [Fri, 6 Jan 2017 13:36:44 +0000 (14:36 +0100)]
fix #5714 Add possibility for adding a comparator to EnumComboElement
- for Sources always have PrimaryTaxonomicSource or PrimaryMediaSource
on top depending on IdentifiableSource
Patrick Plitzner [Fri, 6 Jan 2017 10:08:09 +0000 (11:08 +0100)]
fix #5474 moved Feature and NamedArea to top level
- remaining terms are under "Other..."
Patrick Plitzner [Fri, 6 Jan 2017 07:56:28 +0000 (08:56 +0100)]
fix #5698 Duplicate ampersand to avoid conversion to mnemonic
Patrick Plitzner [Fri, 6 Jan 2017 07:39:55 +0000 (08:39 +0100)]
fix #5922 Move credits and rights section to the bottom
Katja Luther [Wed, 4 Jan 2017 14:03:37 +0000 (15:03 +0100)]
fix #4821: create OrderedTermvoc for OrderedTerms
Patrick Plitzner [Thu, 22 Dec 2016 10:09:14 +0000 (11:09 +0100)]
Fix possible NPE
Andreas Kohlbecker [Tue, 20 Dec 2016 13:28:24 +0000 (14:28 +0100)]
ref #6190 removing svn property place holder in first line of code - java files
Andreas Kohlbecker [Tue, 20 Dec 2016 13:22:26 +0000 (14:22 +0100)]
ref #6190 removing svn property place holder in first line of code - java files
Katja Luther [Tue, 20 Dec 2016 12:03:45 +0000 (13:03 +0100)]
missing changes
Katja Luther [Tue, 20 Dec 2016 11:54:30 +0000 (12:54 +0100)]
minor
Katja Luther [Tue, 20 Dec 2016 11:50:35 +0000 (12:50 +0100)]
minor to fix failing jenkins
Katja Luther [Mon, 19 Dec 2016 15:16:46 +0000 (16:16 +0100)]
more changes for configurable name details view
Katja Luther [Mon, 19 Dec 2016 15:14:51 +0000 (16:14 +0100)]
adaptions for polytomous key editing to avoid null values in children list
Katja Luther [Mon, 19 Dec 2016 15:04:23 +0000 (16:04 +0100)]
ref #6105: add name details view configuration to the cdm preferences view
Katja Luther [Mon, 19 Dec 2016 14:58:13 +0000 (15:58 +0100)]
deduplicate the nomenclatural code preference page in preferences menu
Katja Luther [Thu, 8 Dec 2016 10:57:34 +0000 (11:57 +0100)]
ref #4766: remove apply and restore defaults buttons
Katja Luther [Thu, 8 Dec 2016 10:31:19 +0000 (11:31 +0100)]
ref #4766: sortindex updater integration in admin menu
jenkins [Wed, 7 Dec 2016 12:26:21 +0000 (13:26 +0100)]
Merge branch 'hotfix/4.4.1' into develop
jenkins [Wed, 7 Dec 2016 12:26:20 +0000 (13:26 +0100)]
Merge branch 'hotfix/4.4.1'
jenkins [Tue, 6 Dec 2016 14:40:57 +0000 (15:40 +0100)]
Updated version in pom / project files to taxeditor version : 4.4.1 and cdmlib version : 4.4.1
jenkins [Mon, 5 Dec 2016 15:19:08 +0000 (16:19 +0100)]
Merge branch 'release/4.4.0' into develop
jenkins [Mon, 5 Dec 2016 15:19:07 +0000 (16:19 +0100)]
Merge branch 'release/4.4.0'
jenkins [Mon, 5 Dec 2016 14:50:39 +0000 (15:50 +0100)]
Updated version in pom / project files to taxeditor version : 4.5.0-SNAPSHOT and cdmlib version : 4.5.0-SNAPSHOT
jenkins [Mon, 5 Dec 2016 14:50:34 +0000 (15:50 +0100)]
Updated version in pom / project files to taxeditor version : 4.4.0 and cdmlib version : 4.4.0
Katja Luther [Mon, 5 Dec 2016 09:41:23 +0000 (10:41 +0100)]
fix #6218: avoid NPE when remove text from label field
Andreas Müller [Thu, 1 Dec 2016 15:02:15 +0000 (16:02 +0100)]
fix #5971 fix NPE for not existing preference
Andreas Müller [Thu, 1 Dec 2016 14:46:12 +0000 (15:46 +0100)]
cleanup
Patrick Plitzner [Thu, 1 Dec 2016 14:37:57 +0000 (15:37 +0100)]
ref #6199 Move "open in editor" option to the bottom
Katja Luther [Thu, 1 Dec 2016 10:55:12 +0000 (11:55 +0100)]
add missing files
Katja Luther [Thu, 1 Dec 2016 08:14:09 +0000 (09:14 +0100)]
avoid NPE when reusing taxonname for taxon creation
Katja Luther [Fri, 25 Nov 2016 11:58:15 +0000 (12:58 +0100)]
ref #6219: add warning that synonym is deleted immediately
Patrick Plitzner [Thu, 24 Nov 2016 13:50:50 +0000 (14:50 +0100)]
l10n for PresenceAbsenceTermDetailElement
Patrick Plitzner [Thu, 24 Nov 2016 13:27:33 +0000 (14:27 +0100)]
ref #6216 Added button to select color instead of clicking on color
field
- resized color field
Patrick Plitzner [Thu, 24 Nov 2016 13:26:42 +0000 (14:26 +0100)]
Align label to the middle
Katja Luther [Thu, 24 Nov 2016 12:41:57 +0000 (13:41 +0100)]
fix #4945: add propertytester for polytomouskeynode to enable menu items only if node is selected
Katja Luther [Thu, 24 Nov 2016 12:37:20 +0000 (13:37 +0100)]
fix #5971: move admin menu in front of Help
Andreas Müller [Thu, 24 Nov 2016 11:18:52 +0000 (12:18 +0100)]
Adapt labels for taxon node agent relation editing
Patrick Plitzner [Thu, 24 Nov 2016 09:25:55 +0000 (10:25 +0100)]
ref #6216 Pre-select color in ColorDialog
Patrick Plitzner [Thu, 24 Nov 2016 09:22:05 +0000 (10:22 +0100)]
fix #6216 Implement color dialog to change color of presence absence
terms
Katja Luther [Thu, 24 Nov 2016 08:52:40 +0000 (09:52 +0100)]
all polytomouskey related handler are now extended from RemotingCdmHandler
Katja Luther [Wed, 23 Nov 2016 14:04:13 +0000 (15:04 +0100)]
fix #5841: set selection to newly created keynode
Katja Luther [Wed, 23 Nov 2016 13:54:51 +0000 (14:54 +0100)]
fix #6215: check for datasource when opening preferencepage
Katja Luther [Wed, 23 Nov 2016 09:22:12 +0000 (10:22 +0100)]
fix #5971: admin menu is visible only if connected and user has role manager
Katja Luther [Mon, 21 Nov 2016 14:56:35 +0000 (15:56 +0100)]
fix #6209: adapt the message if a datasource is not available
b.stoever [Sat, 19 Nov 2016 12:29:13 +0000 (13:29 +0100)]
Additional strings externalized in molecular plugin.
Wizard for exporting single read alignments now warns and prompts if files are overwritten.
Bug fix: Changes in the format selection in the wizard now trigger validation again.
ExportSingleReadAlignmentWizardModel uses format list instead of map again.
Katja Luther [Fri, 18 Nov 2016 17:20:27 +0000 (18:20 +0100)]
ref #5971: new main menu admin with cdm preference nomenclatural code and insert polytomous key node
b.stoever [Fri, 18 Nov 2016 16:01:41 +0000 (17:01 +0100)]
Messages edited.
Support for parameters to export only single reads or only consensus implemented.
JavaDoc extended.
b.stoever [Fri, 18 Nov 2016 14:45:02 +0000 (15:45 +0100)]
Missing files from last commit added.
b.stoever [Fri, 18 Nov 2016 14:43:45 +0000 (15:43 +0100)]
Export single read alignment wizard separated into two pages.
Option to elongate sequences added.
Application information parameters of JPhyloIO set.