taxeditor.git
7 years agoref #4232 refactoring for comparator
Patrick Plitzner [Thu, 9 Feb 2017 13:33:37 +0000 (14:33 +0100)]
ref #4232 refactoring for comparator

7 years agoref #4232: some more comparators to adapt
Katja Luther [Thu, 9 Feb 2017 13:29:28 +0000 (14:29 +0100)]
ref #4232: some more comparators to adapt

7 years agoref #4232: adapt comparator of filteredSelection dialogs to fulfill the comparator...
Katja Luther [Thu, 9 Feb 2017 12:37:13 +0000 (13:37 +0100)]
ref #4232: adapt comparator of filteredSelection dialogs to fulfill the comparator contract

7 years agoref #4232: adapt comparator to comaparator contract
Katja Luther [Thu, 9 Feb 2017 12:31:11 +0000 (13:31 +0100)]
ref #4232: adapt comparator to comaparator contract

7 years agoref #5474 Add separator and i10n to Term menu
Patrick Plitzner [Wed, 8 Feb 2017 16:23:00 +0000 (17:23 +0100)]
ref #5474 Add separator and i10n to Term menu

7 years agoref #5691: fix the problem that ref. objects view does not has its own thread
Katja Luther [Wed, 8 Feb 2017 14:34:17 +0000 (15:34 +0100)]
ref #5691: fix the problem that ref. objects view does not has its own thread

7 years agoref #5714 The last two terms are always "Other" followed by "Unknown"
Patrick Plitzner [Tue, 7 Feb 2017 18:26:19 +0000 (19:26 +0100)]
ref #5714 The last two terms are always "Other" followed by "Unknown"

7 years agochanges in misapplicationDeletionOperation
Katja Luther [Wed, 8 Feb 2017 10:59:39 +0000 (11:59 +0100)]
changes in misapplicationDeletionOperation

7 years agomissing Messages changes
Katja Luther [Wed, 8 Feb 2017 10:52:53 +0000 (11:52 +0100)]
missing Messages changes

7 years agofix #6308: add delete configuration dialog for synonyms and misapplied names
Katja Luther [Wed, 8 Feb 2017 10:12:20 +0000 (11:12 +0100)]
fix #6308: add delete configuration dialog for synonyms and misapplied names

7 years agore-enabling eu.etaxonomy.taxeditor.test in pom
Andreas Kohlbecker [Tue, 7 Feb 2017 14:51:17 +0000 (15:51 +0100)]
re-enabling  eu.etaxonomy.taxeditor.test in pom

7 years agofixing bundle and tycho plugin config
Andreas Kohlbecker [Tue, 7 Feb 2017 14:39:57 +0000 (15:39 +0100)]
fixing bundle and tycho plugin config

7 years agoUse titleCache for FieldUnits in specimen editor
Patrick Plitzner [Tue, 7 Feb 2017 14:35:50 +0000 (15:35 +0100)]
Use titleCache for FieldUnits in specimen editor

7 years agorevert adding test into parent pom
Katja Luther [Tue, 7 Feb 2017 14:32:27 +0000 (15:32 +0100)]
revert adding test into parent pom

7 years agoRevert "removing all .classpath and .project files"
Andreas Kohlbecker [Tue, 7 Feb 2017 13:20:22 +0000 (14:20 +0100)]
Revert "removing all .classpath and .project files"

This reverts commit c02ad176b4c6452b302560e254f319b7260cd6d8.

7 years agoRevert "Add .project files"
Andreas Kohlbecker [Tue, 7 Feb 2017 13:20:08 +0000 (14:20 +0100)]
Revert "Add .project files"

This reverts commit 7b5184094bda79a0c13e879907eaaafe3b7561b2.

7 years agoadding lifecycle-mapping-metadata.xml to avoid m2e build plugin problems (needs activ...
Andreas Kohlbecker [Tue, 7 Feb 2017 13:15:11 +0000 (14:15 +0100)]
adding lifecycle-mapping-metadata.xml to avoid m2e build plugin problems (needs activation in the properties in Eclipse/Preferences/Maven/Lifecycle Mappings)

7 years agoadding bin folders to gitignore
Andreas Kohlbecker [Tue, 7 Feb 2017 08:49:43 +0000 (09:49 +0100)]
adding bin folders to gitignore

7 years agoAdd .project files
Patrick Plitzner [Tue, 7 Feb 2017 11:05:30 +0000 (12:05 +0100)]
Add .project files

 - revert of c02ad176b4c6452b302560e254f319b7260cd6d8

7 years agoAdd missing dependencies to feature.platform
Patrick Plitzner [Mon, 6 Feb 2017 17:19:56 +0000 (18:19 +0100)]
Add missing dependencies to feature.platform

 - This allows to start the Taxeditor directly in a fresh workspace.
Otherwise you would have to edit the launch configuration locally

7 years agoref #6401 Remove maxPermSize argument (not supported anymore in jdk1.8)
Patrick Plitzner [Mon, 6 Feb 2017 17:18:44 +0000 (18:18 +0100)]
ref #6401 Remove maxPermSize argument (not supported anymore in jdk1.8)

7 years agofix #2939 removing EhCacheConfig from application contexts and configuring the CacheM...
Andreas Kohlbecker [Mon, 6 Feb 2017 16:59:23 +0000 (17:59 +0100)]
fix #2939 removing EhCacheConfig from application contexts and configuring the CacheManager explicitely

7 years agoignoring .classpath files
Andreas Kohlbecker [Mon, 6 Feb 2017 13:55:00 +0000 (14:55 +0100)]
ignoring .classpath files

7 years agoadding script for easier project setup
Andreas Kohlbecker [Mon, 6 Feb 2017 13:24:22 +0000 (14:24 +0100)]
adding  script for easier project setup

7 years agoremoving all .classpath and .project files
Andreas Kohlbecker [Mon, 6 Feb 2017 13:13:37 +0000 (14:13 +0100)]
removing all .classpath and .project files

7 years agoadding eu.etaxonomy.taxeditor.test as subproject
Andreas Kohlbecker [Mon, 6 Feb 2017 13:12:20 +0000 (14:12 +0100)]
adding eu.etaxonomy.taxeditor.test as subproject

7 years agofix #2939 explicitely adding CdmServiceCache to test applicationContext
Andreas Kohlbecker [Mon, 6 Feb 2017 12:05:02 +0000 (13:05 +0100)]
fix #2939 explicitely adding CdmServiceCache to test applicationContext

7 years agosome changes for specimen import
Katja Luther [Mon, 6 Feb 2017 08:47:45 +0000 (09:47 +0100)]
some changes for specimen import

7 years agofix #2939 set up of cacheManager in test applicationContext
Andreas Kohlbecker [Mon, 6 Feb 2017 07:07:36 +0000 (08:07 +0100)]
fix #2939 set up of cacheManager in test applicationContext

7 years agoref #2939 adapting taxeditor spring configuration to new ehCacheManager configuration...
Andreas Kohlbecker [Fri, 3 Feb 2017 21:38:04 +0000 (22:38 +0100)]
ref #2939 adapting taxeditor spring configuration to new ehCacheManager configuration - WARNING: store location still missing!

7 years agofix import issue
Andreas Müller [Fri, 3 Feb 2017 14:02:30 +0000 (15:02 +0100)]
fix import issue

7 years agofix generics
Andreas Müller [Fri, 3 Feb 2017 13:37:04 +0000 (14:37 +0100)]
fix generics

7 years agoref #6362 remove occurrences of NonViralName in code and some cleanup
Andreas Müller [Fri, 3 Feb 2017 13:03:48 +0000 (14:03 +0100)]
ref #6362 remove occurrences of NonViralName in code  and some cleanup

7 years agoref #6401 Add comment for increasing tycho version
Patrick Plitzner [Fri, 3 Feb 2017 09:08:03 +0000 (10:08 +0100)]
ref #6401 Add comment for increasing tycho version

7 years agoref #6401 Update jetty plugin to work with jdk1.8
Patrick Plitzner [Fri, 3 Feb 2017 08:36:22 +0000 (09:36 +0100)]
ref #6401 Update jetty plugin to work with jdk1.8

7 years agoref #6309 Add missing l10n String constant to Messages.java
Patrick Plitzner [Thu, 2 Feb 2017 15:41:48 +0000 (16:41 +0100)]
ref #6309 Add missing l10n String constant to Messages.java

7 years agoref #6401 Update taxeditor workspace plugins to java 8
Patrick Plitzner [Thu, 2 Feb 2017 14:41:15 +0000 (15:41 +0100)]
ref #6401 Update taxeditor workspace plugins to java 8

7 years agoref #6401 Refactor comparison of specimens in factual data view
Patrick Plitzner [Thu, 2 Feb 2017 13:06:59 +0000 (14:06 +0100)]
ref #6401 Refactor comparison of specimens in factual data view

 - use titleCache comparison instead of comparing the objects themselves
 - also fixes compile error for jdk1.8

7 years agofix #6304: before deleting a person in bulkeditor check with isDeletable
Katja Luther [Thu, 2 Feb 2017 13:10:48 +0000 (14:10 +0100)]
fix #6304: before deleting a person in bulkeditor check with isDeletable

7 years agofix #6309: check for existence of user before saving a new user
Katja Luther [Thu, 2 Feb 2017 12:54:47 +0000 (13:54 +0100)]
fix #6309: check for existence of user before saving a new user

7 years agoremove comment
Katja Luther [Thu, 2 Feb 2017 12:03:21 +0000 (13:03 +0100)]
remove comment

7 years agofix #6300: the newDerivedUnitWizard should not have a session
Katja Luther [Thu, 2 Feb 2017 12:01:24 +0000 (13:01 +0100)]
fix #6300: the newDerivedUnitWizard should not have a session

7 years agominor
Katja Luther [Thu, 2 Feb 2017 09:46:36 +0000 (10:46 +0100)]
minor

7 years agofix #5216: merge grantedAuthority checks for existing grantedAuthority first and...
Katja Luther [Thu, 2 Feb 2017 09:02:11 +0000 (10:02 +0100)]
fix #5216: merge grantedAuthority checks for existing grantedAuthority first and some other fixes for grantedAuthority handling in editor

7 years agoincrease maven-source-plugin, decrease tycho
Patrick Plitzner [Wed, 1 Feb 2017 17:01:08 +0000 (18:01 +0100)]
increase maven-source-plugin, decrease tycho

7 years agoUpdate tycho version
Patrick Plitzner [Wed, 1 Feb 2017 15:44:54 +0000 (16:44 +0100)]
Update tycho version

7 years agoref #6401 Update taxeditor to jdk1.8
Patrick Plitzner [Wed, 1 Feb 2017 15:09:28 +0000 (16:09 +0100)]
ref #6401 Update taxeditor to jdk1.8

 - Fix generic problems

7 years agofix #3737: improve handling of protected/not protected cache fields
Katja Luther [Wed, 1 Feb 2017 13:14:00 +0000 (14:14 +0100)]
fix #3737: improve handling of protected/not protected cache fields

7 years agoref #1606: for inReferences use service methods filtering for the right referencetype
Katja Luther [Wed, 1 Feb 2017 10:11:44 +0000 (11:11 +0100)]
ref #1606: for inReferences use service methods filtering for the right referencetype

7 years agofix #5924: reauthenticate after changing the password
Katja Luther [Tue, 31 Jan 2017 11:09:21 +0000 (12:09 +0100)]
fix #5924: reauthenticate after changing the password

7 years agofix #6372 fix NPE in datasource view
Andreas Müller [Mon, 30 Jan 2017 13:53:47 +0000 (14:53 +0100)]
fix #6372 fix NPE in datasource view

7 years agoref #6365 use TaxonNameFactory for factory methods in TaxEditor
Andreas Müller [Mon, 30 Jan 2017 12:42:50 +0000 (13:42 +0100)]
ref #6365 use TaxonNameFactory for factory methods in TaxEditor

7 years agoref #6365 ref #6366 ref 6364 Update CdmModelCacher in TaxEditor
Andreas Müller [Mon, 30 Jan 2017 00:34:07 +0000 (01:34 +0100)]
ref #6365 ref #6366 ref 6364 Update CdmModelCacher in TaxEditor

7 years agoref #6362 and ref #6365 remove some NVN and Bot/Zoo name occurrences in TaxEditor
Andreas Müller [Mon, 30 Jan 2017 00:29:58 +0000 (01:29 +0100)]
ref #6362 and ref #6365 remove some NVN and Bot/Zoo name occurrences in TaxEditor

7 years agoReverting the last version updates
Patrick Plitzner [Fri, 27 Jan 2017 15:02:17 +0000 (16:02 +0100)]
Reverting the last version updates

7 years agoIncrease java code level to java 1.8
Patrick Plitzner [Fri, 27 Jan 2017 14:55:46 +0000 (15:55 +0100)]
Increase java code level to java 1.8

7 years agoUpdate tycho version from 0.22.0 to 0.26.0
Patrick Plitzner [Fri, 27 Jan 2017 12:07:36 +0000 (13:07 +0100)]
Update tycho version from 0.22.0 to 0.26.0

7 years agoref #6389 avoid service call for icon determination (performance)
pplitzner [Thu, 26 Jan 2017 18:45:56 +0000 (19:45 +0100)]
ref #6389 avoid service call for icon determination (performance)

 - additionally the service call returned undeterministic results

7 years ago(java)doc
Andreas Müller [Thu, 26 Jan 2017 14:10:17 +0000 (15:10 +0100)]
(java)doc

7 years agoref #6360 and ref #6369 update cached model in taxeditor
Andreas Müller [Thu, 26 Jan 2017 13:26:04 +0000 (14:26 +0100)]
ref #6360 and ref #6369 update cached model in taxeditor

7 years agomanually set version numbers
Katja Luther [Thu, 26 Jan 2017 11:00:02 +0000 (12:00 +0100)]
manually set version numbers

7 years agomanually setting the project and cdmlib version to 4.6.0-SNAPSHOT
Andreas Kohlbecker [Wed, 25 Jan 2017 13:52:06 +0000 (14:52 +0100)]
manually setting the project and cdmlib version to 4.6.0-SNAPSHOT

7 years agoMerge branch 'hotfix/4.5.1' into develop
jenkins [Wed, 25 Jan 2017 09:23:35 +0000 (10:23 +0100)]
Merge branch 'hotfix/4.5.1' into develop

7 years agoremove private source path
Katja Luther [Wed, 25 Jan 2017 08:07:34 +0000 (09:07 +0100)]
remove private source path

7 years agoMerge branch 'develop' into hotfix/4.5.1
Andreas Kohlbecker [Tue, 24 Jan 2017 15:02:08 +0000 (16:02 +0100)]
Merge branch 'develop' into hotfix/4.5.1

Conflicts:
eu.etaxonomy.taxeditor.application/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.application/pom.xml
eu.etaxonomy.taxeditor.bulkeditor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.bulkeditor/pom.xml
eu.etaxonomy.taxeditor.cdmlib/.classpath
eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.cdmlib/build.properties
eu.etaxonomy.taxeditor.cdmlib/pom.xml
eu.etaxonomy.taxeditor.editor/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.editor/pom.xml
eu.etaxonomy.taxeditor.feature.jre.linux64/feature.xml
eu.etaxonomy.taxeditor.feature.jre.linux64/pom.xml
eu.etaxonomy.taxeditor.feature.platform/feature.xml
eu.etaxonomy.taxeditor.feature.platform/pom.xml
eu.etaxonomy.taxeditor.feature/feature.xml
eu.etaxonomy.taxeditor.feature/pom.xml
eu.etaxonomy.taxeditor.help/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.help/pom.xml
eu.etaxonomy.taxeditor.molecular.lib/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.molecular.lib/pom.xml
eu.etaxonomy.taxeditor.molecular/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.molecular/pom.xml
eu.etaxonomy.taxeditor.navigation/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.navigation/pom.xml
eu.etaxonomy.taxeditor.printpublisher/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.printpublisher/pom.xml
eu.etaxonomy.taxeditor.store/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.store/pom.xml
eu.etaxonomy.taxeditor.webapp/META-INF/MANIFEST.MF
eu.etaxonomy.taxeditor.webapp/pom.xml
eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product
eu.etaxonomy.taxeditor/eu.etaxonomy.taxeditor.product.with.jre
eu.etaxonomy.taxeditor/pom.xml
pom.xml

7 years agoUpdated version in pom / project files to taxeditor version : 4.5.1 and cdmlib versio...
jenkins [Tue, 24 Jan 2017 14:52:57 +0000 (15:52 +0100)]
Updated version in pom / project files to taxeditor version : 4.5.1 and cdmlib version : 4.5.1

7 years agofix #6376: remove markAsDelete for merged items in bulk editor
Katja Luther [Tue, 24 Jan 2017 13:10:08 +0000 (14:10 +0100)]
fix #6376: remove markAsDelete for merged items in bulk editor

7 years agoCorrectly set default values for EntitySelectionElements
Patrick Plitzner [Mon, 23 Jan 2017 14:19:15 +0000 (15:19 +0100)]
Correctly set default values for EntitySelectionElements

7 years agoFix LibrAlign dependencies
Patrick Plitzner [Mon, 23 Jan 2017 11:58:03 +0000 (12:58 +0100)]
Fix LibrAlign dependencies

7 years agoMerge branch 'develop' into LibrAlign
Patrick Plitzner [Mon, 23 Jan 2017 11:49:40 +0000 (12:49 +0100)]
Merge branch 'develop' into LibrAlign

7 years agoref #5488 Do not abbreviate terms by default
Patrick Plitzner [Mon, 23 Jan 2017 10:28:48 +0000 (11:28 +0100)]
ref #5488 Do not abbreviate terms by default

7 years agoLibrAlign dependency version updated.
b.stoever [Fri, 20 Jan 2017 12:16:27 +0000 (13:16 +0100)]
LibrAlign dependency version updated.

7 years agocheck for id==0 before try to delete the media
Katja Luther [Fri, 20 Jan 2017 09:38:39 +0000 (10:38 +0100)]
check for id==0 before try to delete the media

7 years agoMerge branch 'release/4.5.0' into develop
jenkins [Thu, 19 Jan 2017 11:14:39 +0000 (12:14 +0100)]
Merge branch 'release/4.5.0' into develop

7 years agoMerge branch 'release/4.5.0' 4.5.0
jenkins [Thu, 19 Jan 2017 11:14:37 +0000 (12:14 +0100)]
Merge branch 'release/4.5.0'

7 years agoUpdated version in pom / project files to taxeditor version : 4.6.0-SNAPSHOT and...
jenkins [Thu, 19 Jan 2017 10:54:40 +0000 (11:54 +0100)]
Updated version in pom / project files to taxeditor version : 4.6.0-SNAPSHOT and cdmlib version : 4.6.0-SNAPSHOT

7 years agoUpdated version in pom / project files to taxeditor version : 4.5.0 and cdmlib versio...
jenkins [Thu, 19 Jan 2017 10:54:35 +0000 (11:54 +0100)]
Updated version in pom / project files to taxeditor version : 4.5.0 and cdmlib version : 4.5.0

7 years agomissed to add some selection dialogs with last commit
Katja Luther [Thu, 19 Jan 2017 10:44:16 +0000 (11:44 +0100)]
missed to add some selection dialogs with last commit

7 years agofix #6342: fix exception when using ? in selection dialog
Katja Luther [Thu, 19 Jan 2017 09:39:41 +0000 (10:39 +0100)]
fix #6342: fix exception when using ? in selection dialog

7 years agoref #5474 other -> others
Andreas Müller [Wed, 18 Jan 2017 22:35:16 +0000 (23:35 +0100)]
ref #5474 other -> others

7 years agoref #5714 Fix ordering of source types
Patrick Plitzner [Wed, 18 Jan 2017 16:54:12 +0000 (17:54 +0100)]
ref #5714 Fix ordering of source types

 - order by key instead of message
 - always have either taxonomic or media source as first and the other
as second

7 years agoref #6283 Fixed potential NPE for EntitySelectionElement
Patrick Plitzner [Wed, 18 Jan 2017 15:23:01 +0000 (16:23 +0100)]
ref #6283 Fixed potential NPE for EntitySelectionElement

 - refactored constructors to always initialise the clazz variable

7 years agofix #5496 Refactor preference pages to use TermType
Patrick Plitzner [Wed, 18 Jan 2017 13:49:48 +0000 (14:49 +0100)]
fix #5496 Refactor preference pages to use TermType

7 years agoTIC dependecy version updated.
b.stoever [Wed, 18 Jan 2017 10:08:20 +0000 (11:08 +0100)]
TIC dependecy version updated.

7 years agoref #6333 Remove framework for exchanging an element in the details view
Patrick Plitzner [Wed, 18 Jan 2017 08:28:54 +0000 (09:28 +0100)]
ref #6333 Remove framework for exchanging an element in the details view

 - This is against the concept of the DetailsView just showing an
element which you can edit. Changing the element requires the
DetailsView to know where the element comes from

7 years agoref #6333 Add generic support for entity collection sections to allow
Patrick Plitzner [Wed, 18 Jan 2017 08:16:01 +0000 (09:16 +0100)]
ref #6333 Add generic support for entity collection sections to allow
adding existing entities

 - this is done by two abstract methods allowAddExisting() and
addExisting()

7 years agoref #6307 remove cdmserver/ from contextpath
Andreas Müller [Tue, 17 Jan 2017 22:42:10 +0000 (23:42 +0100)]
ref #6307 remove cdmserver/ from contextpath

7 years agoref #5922 Change order in supplemental data view (cont.)
Andreas Müller [Tue, 17 Jan 2017 22:29:55 +0000 (23:29 +0100)]
ref #5922 Change order in supplemental data view (cont.)

7 years agominor
Katja Luther [Tue, 17 Jan 2017 10:57:44 +0000 (11:57 +0100)]
minor

7 years agofix #6334: unsaved description needs to be removed from the taxon
Katja Luther [Tue, 17 Jan 2017 10:56:14 +0000 (11:56 +0100)]
fix #6334: unsaved description needs to be removed from the taxon

7 years agoadd missing changes
Katja Luther [Tue, 17 Jan 2017 10:52:49 +0000 (11:52 +0100)]
add missing changes

7 years agominor
Katja Luther [Tue, 17 Jan 2017 10:46:35 +0000 (11:46 +0100)]
minor

7 years agofix #5365: add delete configuration to media view
Katja Luther [Tue, 17 Jan 2017 09:59:43 +0000 (10:59 +0100)]
fix #5365: add delete configuration to media view

7 years agoRemoved double reference to TIC in molecular.lib.
b.stoever [Fri, 13 Jan 2017 15:50:27 +0000 (16:50 +0100)]
Removed double reference to TIC in molecular.lib.

7 years agoremove unused bin.include
Patrick Plitzner [Fri, 13 Jan 2017 15:35:17 +0000 (16:35 +0100)]
remove unused bin.include

7 years agoSaving files before refreshing line endings
Patrick Plitzner [Fri, 13 Jan 2017 15:02:43 +0000 (16:02 +0100)]
Saving files before refreshing line endings

7 years agoMerge branch 'develop' into LibrAlign
Patrick Plitzner [Fri, 13 Jan 2017 14:32:31 +0000 (15:32 +0100)]
Merge branch 'develop' into LibrAlign

7 years agoAlternative versions for build.properties added. Current state set to "dependencies...
b.stoever [Fri, 13 Jan 2017 14:11:20 +0000 (15:11 +0100)]
Alternative versions for build.properties added. Current state set to "dependencies from JARs". (Can be merged to trunk in this state.)

7 years agoref #5495 always empty details view when there is no active editor
Patrick Plitzner [Fri, 13 Jan 2017 12:51:58 +0000 (13:51 +0100)]
ref #5495 always empty details view when there is no active editor
providing a selection

7 years agopom.xml and MANIFEST.MF updated in molecular.lib.
b.stoever [Fri, 13 Jan 2017 12:33:36 +0000 (13:33 +0100)]
pom.xml and MANIFEST.MF updated in molecular.lib.