A B C D E F G H I J K L M N O P Q R S T U V W X Z

A

AbsenceTerm - Class in eu.etaxonomy.cdm.model.description
 
AbsenceTerm() - Constructor for class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
AbsenceTerm(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
ACCESS_RIGHTS() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
http://purl.org/dc/terms/accessRights
add(LanguageString) - Method in class eu.etaxonomy.cdm.model.common.MultilanguageSet
 
addAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.Contact
Adds a new postal address to the set of postal addresses of this contact.
addAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addAppendedPhrase(String, NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
addBasionym(T) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a taxon name as basionym of this taxon name.
addBasionym(T, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a taxon name as basionym of this taxon name and keeps the nomenclatural rule considered for it.
addChild(FeatureNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
addChild(FeatureNode, int) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
addChromatogram(Media) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addCitation(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addContinents(Continent) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
addCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.IdentificationKey
 
addDefinition(LanguageString) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDefinition(String, Language) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDerivationEvent(DerivationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDerivative(DerivedUnitBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
addDescribedSpecimenOrObservations(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
addDescription(LanguageString) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addDescription(String, Language) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addDescription(TaxonNameDescription) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new taxon name description to the set of taxon name descriptions assigned to this taxon name.
addDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addDescription(TaxonDescription) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds a new taxon description to the set of taxon descriptions assigned to this (accepted/correct) taxon.
addDescriptionSource(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
addElement(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
addExtension(Extension) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addExtension(Extension) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
addGenBankAccession(GenBankAccession) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
addGeoScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
addHeterotypicSynonymName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym and with the "is heterotypic synonym of" relationship type), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHeterotypicSynonymName(TaxonNameBase, HomotypicalGroup, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the "is heterotypic synonym of" relationship type and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHomotypicSynonym(Synonym, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym, with the "is homotypic synonym of" relationship type and with the reference source on which the relationship assertion is based), returns it and adds it to the set of synonym relationships assigned to this taxon.
addHomotypicSynonymName(TaxonNameBase, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the "is homotypic synonym of" relationship type) and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addHybridChild(BotanicalName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Creates a new hybrid relationship to this botanical name.
addHybridParent(BotanicalName, HybridRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Creates a new hybrid relationship to this botanical name.
addHybridRelationship(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Adds the given hybrid relationship to the set of hybrid relationships of both botanical taxon names involved in this hybrid relationship.
addIncludes(DefinedTermBase) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
addInstitutionalMembership(Institution, TimePeriod, String, String) - Method in class eu.etaxonomy.cdm.model.agent.Person
Adds a new membership of this person in an institution to the set of his institution memberships.
addInverseRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
ADDITIONAL_PUBLICATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
addKeyword(Keyword) - Method in class eu.etaxonomy.cdm.model.agent.Person
Adds a new keyword from the keyword vocabulary to the set of keywords describing or circumscribing this person's activities.
addMarker(Marker) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addMedia(Media) - Method in class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
addMedia(Media) - Method in interface eu.etaxonomy.cdm.model.media.IMediaEntity
Adds a media to this object
addMember(CdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
addMisappliedName(Taxon, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "misapplied name for") instance where this taxon plays the target role and adds it to the set of taxon relationships to this taxon.
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
addModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
addModifyingText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
addModifyingText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
addNameRelationship(NameRelationship) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds an existing name relationship either to the set of relations to this taxon name or to the set of relations from this taxon name.
addNameTypeDesignation(TaxonNameBase, ReferenceBase, String, String, boolean, boolean, boolean, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates and adds a new name type designation to this taxon name's set of type designations.
addNonMember(CdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
addOriginal(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
addPropertyChangeListener(PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(PropertyChangeListener)
addPropertyChangeListener(String, PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(String, PropertyChangeListener)
addRecommendedModifierEnumeration(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
addRecommendedStatisticalMeasure(StatisticalMeasure) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
addRelationship(T) - Method in interface eu.etaxonomy.cdm.model.common.IRelated
 
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Deprecated. 
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Does exactly the same as the addNameRelationship method provided that the given relationship is a name relationship.
addRelationship(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Adds an existing synonym relationship to the set of synonym relationships assigned to this synonym.
addRelationship(RelationshipBase) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Deprecated. 
addRelationshipFromName(TaxonNameBase, NameRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from another taxon name to this taxon name and adds it both to the set of relations to this taxon name and to the set of relations from the other taxon name.
addRelationships(Collection<? extends RelationshipBase>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Adds the relationship in value to the relationships property list.
addRelationshipToName(TaxonNameBase, NameRelationshipType, String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates a new name relationship from this taxon name to another taxon name and adds it both to the set of relations from this taxon name and to the set of relations to the other taxon name.
addRepresentation(Representation, Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
addRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
addRepresentation(MediaRepresentation) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addRepresentationPart(MediaRepresentationPart) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
Address - Class in eu.etaxonomy.cdm.model.agent
This class represents atomized postal addresses.
Address() - Constructor for class eu.etaxonomy.cdm.model.agent.Address
 
addresses - Variable in class eu.etaxonomy.cdm.model.agent.Contact
 
addRights(Rights) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addRights(Rights) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
addRights(Rights) - Method in class eu.etaxonomy.cdm.model.media.Media
 
addScope(Scope) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
addSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
addSource(OriginalSource) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
addSource(OriginalSource) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
addSource(OriginalSource) - Method in interface eu.etaxonomy.cdm.model.common.ISourceable
 
addSpecimenTypeDesignation(Specimen, TypeDesignationStatus, ReferenceBase, String, String, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Creates and adds a new specimen type designation to this taxon name's set of type designations.
addState(State) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
 
addStatisticalValue(StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
addStatus(NomenclaturalStatus) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new nomenclatural status to this taxon name's set of nomenclatural status.
addSuperView(View) - Method in class eu.etaxonomy.cdm.model.view.View
 
addSupportedCategoricalEnumeration(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
addSynonym(Synonym) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Adds the synonym in value to the taxa property list.
addSynonym(Synonym, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym and with the given synonym relationship type), returns it and adds it to the set of synonym relationships assigned to this taxon.
addSynonym(Synonym, SynonymRelationshipType, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym relationship (with the given synonym, with the given synonym relationship type and with the reference source on which the relationship assertion is based), returns it and adds it to the set of synonym relationships assigned to this taxon.
addSynonymName(TaxonNameBase, SynonymRelationshipType) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym and with the given synonym relationship type), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addSynonymName(TaxonNameBase, SynonymRelationshipType, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new synonym (with the given taxon name), a new synonym relationship (with the new synonym, with the given synonym relationship type and with the reference source on which the relationship assertion is based), returns the relationship and adds it to the set of synonym relationships assigned to this taxon.
addSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Adds an existing synonym relationship to the set of synonym relationships assigned to this synonym.
addSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds an existing synonym relationship to the set of synonym relationships assigned to this taxon.
addSynonyms(Collection<Synonym>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Adds the synonym in value to the synonyms property list.
addTaxa(Collection<Taxon>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Adds the taxa in value to the taxa property list.
addTaxon(Taxon) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Adds the taxon in value to the taxa property list.
addTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Adds a new taxon base to the set of taxon bases using this taxon name.
addTaxonomicChild(Taxon, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship (with taxon relationship type "taxonomically included in") instance where this taxon plays the target role (parent) and adds it to the set of "taxon relationships to" belonging to this taxon.
addTaxonRelation(TaxonRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Adds an existing taxon relationship either to the set of taxon relationships to this taxon or to the set of taxon relationships from this taxon.
addTaxonRelation(Taxon, TaxonRelationshipType, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new taxon relationship instance where this taxon plays the source role and adds it to the set of "taxon relationships from" belonging to this taxon.
addTeamMember(Person) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the end of the members' list.
addTeamMember(Person, int) - Method in class eu.etaxonomy.cdm.model.agent.Team
Adds a new person to this team at the given index place of the members' list.
addTerm(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addTerm(T) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
addTermAbove(T, T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addTermBelow(T, T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
addType(InstitutionType) - Method in class eu.etaxonomy.cdm.model.agent.Institution
Adds a new institutional type (from the corresponding vocabulary) to the set of institution types of this institution.
addTypifiedName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Adds a new taxon name to the set of taxon names that belong to this homotypical group.
addTypifiedName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Deprecated. 
addUsedSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
addWaterbodyOrCountry(WaterbodyOrCountry) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
addYear(String, T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
addYear(String, T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
 
ADMINISTRATION_AREA() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
The boundaries depend on administration (county, state, reserve, etc.)
AFRICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
afterAuthor - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
afterYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
 
Agent - Class in eu.etaxonomy.cdm.model.agent
The upmost (abstract) class for agents such as persons, teams or institutions.
Agent() - Constructor for class eu.etaxonomy.cdm.model.agent.Agent
 
agentData - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
agents - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
ALTERNATIVE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "alternative".
ALTERNATIVE_NAME() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "alternative name" name relationship type.
AMBIGUOUS() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "ambiguous".
AnnotatableEntity<T extends AnnotatableEntity> - Class in eu.etaxonomy.cdm.model.common
Abstract superclass implementing human annotations and machine markers to be assigned to CDM objects.
AnnotatableEntity() - Constructor for class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
Annotation - Class in eu.etaxonomy.cdm.model.common
 
Annotation(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Annotation
Constructor
annotations - Variable in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
ANTARCTICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
ARABIC() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
ARGENTINA_ARGENTINE_REPUBLIC() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
Article - Class in eu.etaxonomy.cdm.model.reference
This class represents articles in a journal.
Article() - Constructor for class eu.etaxonomy.cdm.model.reference.Article
Class constructor: creates a new empty article instance only containing the default cache strategy.
ARTICLE() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "article": an article from a journal or magazine.
ArticleDefaultCacheStrategy<T extends Article> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
ASIA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
assemble(Serializable, Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
AudioFile - Class in eu.etaxonomy.cdm.model.media
 
AudioFile() - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
Constructor
AudioFile(String, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.AudioFile
Constructor
author(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses an authorTeam String and returns the Team !!!
authorsAndEx(String, TeamOrPersonBase[], Integer[]) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses the author and ex-author String
AuthorYearSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
AVERAGE() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 

B

BacterialName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for bacteria.
BacterialName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BacterialName
Class constructor: creates a new bacterial taxon name instance only containing its rank, its homotypical group and the default cache strategy.
BASIONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "basionym" name relationship type.
BasionymAuthorCombinationAuthorSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
BasionymEnd - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
BasionymStart - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
beforeMarshal(Object) - Method in class eu.etaxonomy.cdm.jaxb.CdmMarshallerListener
 
beforeMicroReference - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
beforeYear - Variable in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
 
BibtexDefaultCacheStrategy<T extends BibtexReference> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
BibtexEntryType - Class in eu.etaxonomy.cdm.model.reference
The class representing types (categories) of BibTeX references (like "article" or "book").
BibtexEntryType() - Constructor for class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Class constructor: creates a new empty BibTeX entry type instance.
BibtexEntryType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Class constructor: creates an additional BibTeX entry type instance with a description (in the default language), a label and a label abbreviation.
BibtexReference - Class in eu.etaxonomy.cdm.model.reference
This class represents references which are structured according to the BibTeX format.
BibtexReference() - Constructor for class eu.etaxonomy.cdm.model.reference.BibtexReference
Class constructor: creates a new empty BibTeX reference instance only containing the default cache strategy.
BIOLOGY_ECOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
BIOVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
BLOCKING_NAME_FOR() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "blocking name" name relationship type.
BOOK() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "book" (with an explicit publisher).
Book - Class in eu.etaxonomy.cdm.model.reference
This class represents books.
Book() - Constructor for class eu.etaxonomy.cdm.model.reference.Book
Class constructor: creates a new empty book instance only containing the default cache strategy.
BookDefaultCacheStrategy<T extends Book> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
BOOKLET() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "booklet": a work that is printed and bound, but without a named publisher or sponsoring institution.
BookSection - Class in eu.etaxonomy.cdm.model.reference
This class represents isolated sections (parts or chapters) within a book.
BookSection() - Constructor for class eu.etaxonomy.cdm.model.reference.BookSection
Class constructor: creates a new empty book section instance only containing the default cache strategy.
BookSectionDefaultCacheStrategy<T extends BookSection> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
BotanicalName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for plants and fungi.
BotanicalName() - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance only containing the default cache strategy.
BotanicalName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance only containing its rank, its homotypical group and the default cache strategy.
BotanicalName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.BotanicalName
Class constructor: creates a new botanical taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
BotanicNameDefaultCacheStrategy<T extends BotanicalName> - Class in eu.etaxonomy.cdm.strategy.cache.name
T
BotanicNameDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
 

C

cacheStrategy - Variable in class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
 
cacheStrategy - Variable in class eu.etaxonomy.cdm.model.name.NonViralName
 
cacheStrategy - Variable in class eu.etaxonomy.cdm.model.name.ViralName
 
cacheStrategy - Variable in class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
CANDIDATE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CategoricalData - Class in eu.etaxonomy.cdm.model.description
 
CategoricalData() - Constructor for class eu.etaxonomy.cdm.model.description.CategoricalData
 
CdDvd - Class in eu.etaxonomy.cdm.model.reference
This class represents electronic publications the support of which are Cds (Compact Discs) or Dvds (Digital Versatile Discs).
CdDvd() - Constructor for class eu.etaxonomy.cdm.model.reference.CdDvd
 
CdmBase - Class in eu.etaxonomy.cdm.model.common
The base class for all CDM domain classes implementing UUIDs and bean property change event firing.
CdmBase() - Constructor for class eu.etaxonomy.cdm.model.common.CdmBase
Class constructor assigning a unique UUID and creation date.
CdmDocumentBuilder - Class in eu.etaxonomy.cdm.jaxb
 
CdmDocumentBuilder() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmDocumentBuilder
 
CdmMarshallerListener - Class in eu.etaxonomy.cdm.jaxb
 
CdmMarshallerListener() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmMarshallerListener
 
CdmResourceResolver - Class in eu.etaxonomy.cdm.jaxb
 
CdmResourceResolver() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmResourceResolver
 
CdmSchemaGenerator - Class in eu.etaxonomy.cdm.jaxb
 
CdmSchemaGenerator() - Constructor for class eu.etaxonomy.cdm.jaxb.CdmSchemaGenerator
 
CHINESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
CITATION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
CLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
clone() - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
clone(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Annotation
Clones this annotation and sets the clone's annotated object to 'annotatedObject'
clone(CdmBase) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
clone(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.Extension
Clones this extension and sets the clone's extended object to 'extendedObject'
clone() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.common.Marker
 
clone(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Marker
Clones this marker and sets the clones marked object to 'markedObject'
clone() - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
clone(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
Clones this original source and sets the clones sourced object to 'sourceObj'
clone() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
clone() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
clone() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Clones this versionable entity.
clone() - Method in class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
clone() - Method in class eu.etaxonomy.cdm.model.reference.Article
Clones this article.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Book
Clones this book.
clone() - Method in class eu.etaxonomy.cdm.model.reference.BookSection
Clones this book section.
clone() - Method in class eu.etaxonomy.cdm.model.reference.CdDvd
Clones this Cd or Dvd instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Database
Clones this database instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Clones this generic reference.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Journal
Clones this journal instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Map
Clones this map instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Patent
Clones this patent instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.PersonalCommunication
Clones this personal communication instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Clones this printed unit.
clone() - Method in class eu.etaxonomy.cdm.model.reference.PrintSeries
Clones this print series instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Proceedings
Clones this conference proceedings.
clone() - Method in class eu.etaxonomy.cdm.model.reference.PublicationBase
Clones this publication.
clone() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Clones this reference.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Report
Clones this report instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.SectionBase
Clones this section.
clone() - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
Clones this reference.
clone() - Method in class eu.etaxonomy.cdm.model.reference.Thesis
Clones this thesis instance.
clone() - Method in class eu.etaxonomy.cdm.model.reference.WebPage
Clones this web page instance.
Collection - Class in eu.etaxonomy.cdm.model.occurrence
 
Collection() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Collection
Constructor
COMBINATION_INVALID() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "invalid combination".
COMMON_NAME() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
CommonTaxonName - Class in eu.etaxonomy.cdm.model.description
only valid for Taxa, not specimen/occurrences.
CommonTaxonName() - Constructor for class eu.etaxonomy.cdm.model.description.CommonTaxonName
 
compare(T, T) - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
compare(TaxonBase, TaxonBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonComparator
Returns an integer generated by comparing the publication years of both taxon names used in the given taxa.
compareTo(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
COMPLETE() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
CONFERENCE() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "conference": the same meaning as "inproceedings".
CONFUSUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "confusum".
CONGRUENT_TO() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is congruent to".
CONSERVED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "conserved".
CONSERVED_AGAINST() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "conserved against" name relationship type.
CONSERVED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be conserved".
Contact - Class in eu.etaxonomy.cdm.model.agent
The class for information on how to approach a person or an institution.
Contact() - Constructor for class eu.etaxonomy.cdm.model.agent.Contact
Class constructor.
Continent - Class in eu.etaxonomy.cdm.model.location
 
Continent() - Constructor for class eu.etaxonomy.cdm.model.location.Continent
Constructor
Continent(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.Continent
 
CONTRADICTION() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is impossible" (contradiction).
CONVAR() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
COPYRIGHT() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
 
countLanguages() - Method in class eu.etaxonomy.cdm.model.description.TextData
 
createOutput(String, String) - Method in class eu.etaxonomy.cdm.jaxb.CdmSchemaGenerator
Buffers one schema file per namespace.
createSchema() - Method in class eu.etaxonomy.cdm.jaxb.CdmSchemaGenerator
Not used Buffers one single generated schema.
CULTIVAR() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CULTIVARGROUP() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
CultivarPlantName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for cultivars (cultivated plants).
CultivarPlantName() - Constructor for class eu.etaxonomy.cdm.model.name.CultivarPlantName
Class constructor: creates a new cultivar taxon name instance only containing the default cache strategy.
CultivarPlantName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.CultivarPlantName
Class constructor: creates a new cultivar taxon name instance only containing its rank, its homotypical group and the default cache strategy.

D

Database - Class in eu.etaxonomy.cdm.model.reference
This class represents a database used as an information source.
Database() - Constructor for class eu.etaxonomy.cdm.model.reference.Database
 
DataSet - Class in eu.etaxonomy.cdm.jaxb
 
DataSet() - Constructor for class eu.etaxonomy.cdm.jaxb.DataSet
 
DateTimeAdapter - Class in eu.etaxonomy.cdm.jaxb
 
DateTimeAdapter() - Constructor for class eu.etaxonomy.cdm.jaxb.DateTimeAdapter
 
decreaseIndex(OrderedTermVocabulary<OrderedTermBase>) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
Deprecated. 
deepCopy(Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
DEFAULT() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
DEFAULT_LANGUAGE() - Static method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
DefaultVocabularyStore - Class in eu.etaxonomy.cdm.model.common.init
 
DefaultVocabularyStore() - Constructor for class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
DefinedTermBase<T extends DefinedTermBase> - Class in eu.etaxonomy.cdm.model.common
walkaround for enumerations, base type according to TDWG.
DefinedTermBase() - Constructor for class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
DefinedTermBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
definedTermsMap - Static variable in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
DENOMINATIONCLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
DerivationEvent - Class in eu.etaxonomy.cdm.model.occurrence
 
DerivationEvent() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Constructor
DerivationEventType - Class in eu.etaxonomy.cdm.model.occurrence
 
DerivationEventType() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Constructor
DerivationEventType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Constructor
derivatives - Variable in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
DerivedUnitBase - Class in eu.etaxonomy.cdm.model.occurrence
http://www.bgbm.org/biodivinf/docs/CollectionModel/ReprintTNR.pdf http://www.bgbm.org/biodivinf/docs/CollectionModel/
Type figures are derived units with at least a figure object in media
DerivedUnitBase() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
Constructor
DerivedUnitBase(FieldObservation) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
create new unit derived from an existing field observation
DerivedUnitBase(GatheringEvent) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
create new unit derived from an existing gathering event, thereby creating a new empty field observation
DESCRIPTION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
DescriptionBase - Class in eu.etaxonomy.cdm.model.description
The upmost (abstract) class for the whole description with possibly several feature data of a specimen or of a taxon.
DescriptionBase() - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionBase
 
DescriptionElementBase - Class in eu.etaxonomy.cdm.model.description
The upmost (abstract) class for a description element of a specimen or of a taxon.
DescriptionElementBase() - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
DescriptionElementBase(Feature) - Constructor for class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
DeterminationEvent - Class in eu.etaxonomy.cdm.model.occurrence
 
DeterminationEvent() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
Constructor
DeterminationModifier - Class in eu.etaxonomy.cdm.model.occurrence
modifier for a determination.
DeterminationModifier() - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Constructor
DeterminationModifier(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Constructor
DIAGNOSIS() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
disassemble(Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
Distribution - Class in eu.etaxonomy.cdm.model.description
fact attribute contains the concrete occurrence term like "Extinct" This allows all terms to enter the database and classify them basically according to class hierarchy of distribution.
Distribution() - Constructor for class eu.etaxonomy.cdm.model.description.Distribution
 
DISTRIBUTION() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
DIVISION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
DNA_EXTRACTION() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
DnaSample - Class in eu.etaxonomy.cdm.model.molecular
 
DnaSample() - Constructor for class eu.etaxonomy.cdm.model.molecular.DnaSample
 
DOES_NOT_EXCLUDE() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "does not exclude".
DOES_NOT_OVERLAP() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "does not overlap".
DOMAIN() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
DOUBTFUL() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "doubtful" (dubious).
DUPLICATE() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
DUTCH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 

E

ECOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
EMPIRE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
ENGLISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
EPITYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "epitype" designation status.
equals(Object) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
Is true if UUID is the same for the passed Object and this one.
equals(Object) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
equals(Object) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
equals(Object, Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
equals(Object) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Is true if UUID and created timestamp are the same for the passed Object and this one.
ETYMOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
eu.etaxonomy.cdm.datagenerator - package eu.etaxonomy.cdm.datagenerator
 
eu.etaxonomy.cdm.jaxb - package eu.etaxonomy.cdm.jaxb
 
eu.etaxonomy.cdm.model.agent - package eu.etaxonomy.cdm.model.agent
Provides classes for different kinds of agents such as persons, teams or institutions.
eu.etaxonomy.cdm.model.common - package eu.etaxonomy.cdm.model.common
Provides general technical or common classes on the base of which are built the model classes of all others thematic packages.
eu.etaxonomy.cdm.model.common.init - package eu.etaxonomy.cdm.model.common.init
 
eu.etaxonomy.cdm.model.description - package eu.etaxonomy.cdm.model.description
Provides classes: to describe specimens, observations or taxa, to associate other factual informations to specimens, observations or taxa (including distribution), to support identification by means of keys.
eu.etaxonomy.cdm.model.location - package eu.etaxonomy.cdm.model.location
Provides classes for georeferencing gathering or observation events.
eu.etaxonomy.cdm.model.media - package eu.etaxonomy.cdm.model.media
 
eu.etaxonomy.cdm.model.molecular - package eu.etaxonomy.cdm.model.molecular
Provides classes for DNA samples and related sequences.
eu.etaxonomy.cdm.model.name - package eu.etaxonomy.cdm.model.name
Provides classes for nomenclature and typification.
eu.etaxonomy.cdm.model.occurrence - package eu.etaxonomy.cdm.model.occurrence
Provides classes for specimens, collections and field observations.
eu.etaxonomy.cdm.model.reference - package eu.etaxonomy.cdm.model.reference
Provides classes for nomenclatural and bibliographical references either as a complex structure of specific subclasses according to the different kind of possible references used (see StrictReferenceBase class and subclasses) or as a flat structure (see BibTexReference class).
eu.etaxonomy.cdm.model.taxon - package eu.etaxonomy.cdm.model.taxon
Provides classes for taxonomy including synonymy and concept synonymy.
eu.etaxonomy.cdm.model.view - package eu.etaxonomy.cdm.model.view
 
eu.etaxonomy.cdm.strategy - package eu.etaxonomy.cdm.strategy
 
eu.etaxonomy.cdm.strategy.cache.agent - package eu.etaxonomy.cdm.strategy.cache.agent
 
eu.etaxonomy.cdm.strategy.cache.common - package eu.etaxonomy.cdm.strategy.cache.common
 
eu.etaxonomy.cdm.strategy.cache.name - package eu.etaxonomy.cdm.strategy.cache.name
 
eu.etaxonomy.cdm.strategy.cache.reference - package eu.etaxonomy.cdm.strategy.cache.reference
 
eu.etaxonomy.cdm.strategy.exceptions - package eu.etaxonomy.cdm.strategy.exceptions
 
eu.etaxonomy.cdm.strategy.parser - package eu.etaxonomy.cdm.strategy.parser
 
EUROPE() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
EventBase - Class in eu.etaxonomy.cdm.model.common
 
EventBase() - Constructor for class eu.etaxonomy.cdm.model.common.EventBase
 
ExAuthorSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
EXCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "excludes".
Extension - Class in eu.etaxonomy.cdm.model.common
This class aims to make available more "attributes" for identifiable entities in a flexible way.
Extension() - Constructor for class eu.etaxonomy.cdm.model.common.Extension
 
ExtensionType - Class in eu.etaxonomy.cdm.model.common
Extension types similar to dynamically defined attributes.
ExtensionType() - Constructor for class eu.etaxonomy.cdm.model.common.ExtensionType
 
ExtensionType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.ExtensionType
 

F

FAMILY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Feature - Class in eu.etaxonomy.cdm.model.description
Individual property of observed phenomena able to be described or measured.
Feature() - Constructor for class eu.etaxonomy.cdm.model.description.Feature
Default Constructor
Feature(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Feature
 
FeatureNode - Class in eu.etaxonomy.cdm.model.description
 
FeatureNode() - Constructor for class eu.etaxonomy.cdm.model.description.FeatureNode
 
FeatureTree - Class in eu.etaxonomy.cdm.model.description
Feature type trees arrange feature types (characters).
FeatureTree() - Constructor for class eu.etaxonomy.cdm.model.description.FeatureTree
 
FEMALE_PARENT() - Static method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Returns the "female parent" hybrid relationship type.
FieldObservation - Class in eu.etaxonomy.cdm.model.occurrence
In situ observation of a taxon in the field.
FieldObservation() - Constructor for class eu.etaxonomy.cdm.model.occurrence.FieldObservation
Constructor
Figure - Class in eu.etaxonomy.cdm.model.common
 
Figure() - Constructor for class eu.etaxonomy.cdm.model.common.Figure
Constructor
findByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
findByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
firePropertyChange(String, String, String) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
firePropertyChange(String, int, int) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
firePropertyChange(String, float, float) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
firePropertyChange(String, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
firePropertyChange(String, Object, Object) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
firePropertyChange(PropertyChangeEvent) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
FIRST_PARENT() - Static method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Returns the "first parent" hybrid relationship type.
FORM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Fossil - Class in eu.etaxonomy.cdm.model.occurrence
 
Fossil() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Fossil
Constructor
FRENCH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
fullAuthors(String, TeamOrPersonBase[], Integer[], Class) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses the fullAuthorString
fullAuthorsChecked(String, TeamOrPersonBase[], Integer[]) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 

G

GATHERING_IN_SITU() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
GatheringEvent - Class in eu.etaxonomy.cdm.model.occurrence
The event when gathering a specimen or recording a field observation only
GatheringEvent() - Constructor for class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Constructor
GenBankAccession - Class in eu.etaxonomy.cdm.model.molecular
 
GenBankAccession() - Constructor for class eu.etaxonomy.cdm.model.molecular.GenBankAccession
 
generateAuthorship() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Generates and returns a concatenated and formated authorteams string including basionym and combination authors of this non viral taxon name according to the strategy defined in INonViralNameCacheStrategy.
generateNameCache() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Generates the composed name string of this non viral taxon name without author strings or year according to the strategy defined in INonViralNameCacheStrategy.
generateTitle() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Generates the identification string for this institution.
generateTitle() - Method in class eu.etaxonomy.cdm.model.agent.Person
Generates the "full" name string of this person according to the strategy defined in PersonDefaultCacheStrategy.
generateTitle() - Method in class eu.etaxonomy.cdm.model.agent.Team
Generates an identification string for this team according to the strategy defined in TeamDefaultCacheStrategy.
generateTitle() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
generateTitle() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
generateTitle() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
generateTitle() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
generateTitle() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Generates and returns the string with the scientific name of this non viral taxon name including author strings and maybe year according to the strategy defined in INonViralNameCacheStrategy.
generateTitle() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Generates and returns the string with the scientific name of this taxon name (only non viral taxon names can be generated from their components).
generateTitle() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Generates and returns the string with the scientific name of this viral taxon name.
generateTitle() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
generateTitle() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.Article
Generates, according to the default cache strategy assigned to this article, a string that identifies this article and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Generates, according to the default cache strategy assigned to this BibTeX reference, a string that identifies this BibTeX reference and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.Book
Generates, according to the default cache strategy assigned to this book, a string that identifies this book and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.BookSection
Generates, according to the default cache strategy assigned to this book section, a string that identifies this book section and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Generates, according to the default cache strategy assigned to this generic reference, a string that identifies this reference and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Generates, according to the cache strategy assigned to this reference, a string that identifies this reference and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.reference.WebPage
Generates, according to the cache strategy assigned to this web page, a string that identifies this web page and returns it.
generateTitle() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Generates and returns the string with the full scientific name (including authorship) of the taxon name used in this (abstract) taxon as well as the title of the reference using this taxon name.
Generic - Class in eu.etaxonomy.cdm.model.reference
This class represents all references which cannot be clearly assigned to a particular reference subclass.
Generic() - Constructor for class eu.etaxonomy.cdm.model.reference.Generic
Class constructor: creates a new empty generic reference instance only containing the default cache strategy.
GenericDefaultCacheStrategy<T extends Generic> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
GENUS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
GERMAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
getAbbreviatedLabel() - Method in class eu.etaxonomy.cdm.model.common.Representation
 
getAbbreviatedText() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
getAbbreviation() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the abbreviated rank name for this rank according to the Berlin Model.
getAbsoluteElevation() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getAbsoluteElevationError() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getAcceptedTaxa() - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Returns the set of all ("accepted/correct") taxa involved in the same synonym relationships as this synonym.
getAcceptedTaxon() - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Returns the ("accepted/correct") taxon involved in this synonym relationship.
getAccessionNumber() - Method in class eu.etaxonomy.cdm.model.molecular.GenBankAccession
 
getAcronym() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Returns the accepted acronym (an assigned abbreviation) string for this viral taxon name.
getActor() - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
getActor() - Method in interface eu.etaxonomy.cdm.model.common.IEvent
 
getAddress() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the address of the publisher of this BibTeX reference (usually just the city, but can be the full address for lesser-known publishers).
getAddresses() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Returns the set of postal addresses belonging to this contact.
getAgent() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
getAgentData() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the agentData property.
getAgents() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the agents property.
getAnnotatedObj() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
getAnnotations() - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
getAnnote() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing a (not typical) annotation for annotated bibliography styles to be applied to this BibTeX reference.
getAppendedPhrase() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the appended phrase string assigned to this taxon name.
getArea() - Method in class eu.etaxonomy.cdm.model.description.Distribution
 
getAreaByTdwgLabel(String) - Static method in class eu.etaxonomy.cdm.model.location.TdwgArea
 
getArtist() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getAssociatedSpecimenOrObservation() - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
getAuthorAndExAuthor(INomenclaturalAuthor, INomenclaturalAuthor) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Returns the AuthorCache part for a combination of an author and an ex author.
getAuthorshipCache() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the concatenated and formated authorteams string including basionym and combination authors of this non viral taxon name.
getAuthorshipCache(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
returns the composed author string
getAuthorshipCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getAuthorshipCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
getAuthorTeam() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns the author (team) who created the content of this reference.
getAuthorYearSeperator() - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
getBankNumber() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
getBaseURI() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getBasionym() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the taxon name which is the basionym of this taxon name.
getBasionymAuthorCombinationAuthorSeperator() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
String that seperates the basionym/original_combination author part from the combination author part
getBasionymAuthorTeam() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the author (team) that published the original combination on which this non viral taxon name is nomenclaturally based.
getBasionymEnd() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
String the basionym author part ends with e.g. ')'.
getBasionymStart() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
String the basionym author part starts with e.g. '('.
getBeforeMicroReference() - Method in interface eu.etaxonomy.cdm.strategy.cache.reference.INomenclaturalReferenceCacheStrategy
Returns the character sequence before the micro reference (e.g. ": ")
getBeforeMicroReference() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
getBooktitle() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the book title this BibTeX reference, with the entry type "INBOOK", "INCOLLECTION" "INPROCEEDINGS" or "CONFERENCE", was published in.
getBreed() - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns the breed name string for this animal (zoological taxon name).
getByteStream() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.common.Language
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
 
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
getbyUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Returns the hybrid relationship type identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the name relationship type identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the nomenclature code identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.Rank
Returns the taxonomical rank identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the type designation status identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Returns the synonym relationship type identified through its immutable universally unique identifier (UUID).
getByUuid(UUID) - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the taxon relationship type identified through its immutable universally unique identifier (UUID).
getCacheStrategy() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the cache strategy used to generate several strings corresponding to this non viral taxon name (in particular taxon name caches and author strings).
getCacheStrategy() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the cache strategy used to generate several strings corresponding to this taxon name (in particular taxon name caches and author strings).
getCacheStrategy() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Returns the cache strategy used to generate several strings corresponding to this viral taxon name.
getCatalogNumber() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getCertifiedText() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getChapter() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the chapter number of this BibTeX reference with the entry type "INBOOK" or "INCOLLECTION" if this part of a book is a chapter.
getCharacterStream() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getChildAt(int) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getChildCount() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getChildRelationships() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the set of all hybrid relationships in which this botanical taxon name is involved as a child.
getChildren() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getChromatograms() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getCitation() - Method in interface eu.etaxonomy.cdm.model.common.IReferencedEntity
 
getCitation() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
getCitation() - Method in class eu.etaxonomy.cdm.model.media.ReferencedMedia
 
getCitation() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getCitation() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns a formatted string containing the entire reference citation, including authors, title, journal, pages, corresponding to this article.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns a formatted string containing the entire reference citation, including authors and other elements corresponding to this BibTeX reference.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.Book
Returns a formatted string containing the entire reference citation, including authors, title, edition, volume, series, corresponding to this book.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.BookSection
Returns a formatted string containing the entire reference citation, including authors, title, book authors, book title, pages, corresponding to this book section.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns a formatted string containing the entire reference citation, including authors, corresponding to this generic reference.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns a formatted string containing the entire reference citation, including authors, corresponding to this reference.
getCitation() - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
Returns a formatted string containing the entire reference citation, including authors, corresponding to this reference.
getCitation() - Method in class eu.etaxonomy.cdm.model.view.View
 
getCitationMicroReference() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
getCitationMicroReference() - Method in class eu.etaxonomy.cdm.model.media.ReferencedMedia
 
getCitationMicroReference() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getCitations() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getCitationString() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the complete string containing the nomenclatural reference citation and the details assigned to this taxon name.
getCode() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Returns the string representing the code (can also be an acronym or initials) by which this institution is known among experts.
getCode() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getCodeStandard() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getCollectingArea() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getCollectingMethod() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getCollection() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getCollector() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getCombinationAuthorTeam() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the author (team) that published this non viral taxon name.
getCommentator() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
getCompareLanguage() - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
getContact() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the contact (of a person or of an institution) to which this address belongs.
getContact() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Returns the contact corresponding to this institution.
getContact() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the contact of this person.
getContinents() - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
getCountry() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the country involved in this postal address.
getCoveredTaxa() - Method in class eu.etaxonomy.cdm.model.description.IdentificationKey
 
getCreated() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
getCreated() - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
 
getCreatedBy() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
getCreatedBy() - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
 
getCrossref() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the BibTeX reference this BibTeX reference belongs to (for instance a BibTeX reference with the entry type "INBOOK" belongs to another BibTeX reference with the entry type "BOOK").
getCultivarName() - Method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
Returns the characteristical cultivar name part string assigned to this cultivar taxon name.
getDatePublished() - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
Returns the date (mostly only the year) of publication / creation of this reference.
getDateSequenced() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getDefaultLanguage() - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
getDefinition() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getDepartment() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Returns the string representing the name of the department (within the institution involved in this institutional membership) to which the person belongs.
getDerivationEvents() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getDerivatives() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
getDerivedFrom() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getDescribedSpecimenOrObservations() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Returns the set of specimens or observations involved in this description as a whole.
getDescription() - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
getDescription() - Method in class eu.etaxonomy.cdm.model.common.Representation
 
getDescription() - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getDescription(Language) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getDescription() - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
getDescription() - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
getDescription() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getDescription() - Method in class eu.etaxonomy.cdm.model.molecular.Locus
 
getDescription() - Method in class eu.etaxonomy.cdm.model.view.View
 
getDescriptions() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of taxon name descriptions assigned to this taxon name.
getDescriptions() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getDescriptions() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of taxon descriptions concerning this taxon.
getDescriptionSources() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
Returns the set of references used as sources for this description as a whole.
getDeterminations() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getDeterminer() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
getDistanceToGround() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getDistanceToWaterSurface() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getDuration() - Method in class eu.etaxonomy.cdm.model.media.AudioFile
 
getDuration() - Method in class eu.etaxonomy.cdm.model.media.MovieFile
 
getEdition() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the edition of this BibTeX reference with the entry type "BOOK", "INBOOK" or "MANUAL".
getEdition() - Method in class eu.etaxonomy.cdm.model.reference.Book
Returns the string representing the edition of this book.
getEditor() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the name(s) of the editor(s) of this BibTeX reference.
getEditor() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the name of the editor of this generic reference.
getEditor() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Returns the string representing the name of the editor of this printed unit.
getElements() - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
getEmail() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Returns the string representing the electronic mail address included in this contact.
getEncoding() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getEnd() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
getEprint() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string specifying this BibTeX reference as an electronic publication (often a preprint or a technical report).
getEqualTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getErrorRadius() - Method in class eu.etaxonomy.cdm.model.location.Point
 
getExactLocation() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getExAuthorSeperator() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
String to seperate ex author from author.
getExBasionymAuthorTeam() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the author (team) that contributed to the publication of the original combination this non viral taxon name is based on.
getExCombinationAuthorTeam() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the author (team) that contributed to the publication of this non viral taxon name as generally stated by the combination author (team) itself.
getExtendedObj() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
getExtensions() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
getExtensions() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
getExtractedFrom() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
getFax() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Returns the string representing the telefax number included in this contact.
getFeature() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
getFeature() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getFieldNotes() - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
getFieldNumber() - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
getFirstname() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the string representing the given name or forename (for instance "John") of this person.
getFlag() - Method in class eu.etaxonomy.cdm.model.common.Marker
The flag value.
getFormat() - Method in class eu.etaxonomy.cdm.model.description.TextData
 
getFromName() - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
Returns the taxon name that plays the source role in this taxon name relationship.
getFromTaxon() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Returns the taxon involved as a source in this taxon relationship.
getGatheringDate() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
EventBase managed attributes
getGatheringEvent() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getGatheringEvent() - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
getGatheringEvent() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getGenBankAccession() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getGeneralizationOf() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getGenusOrUninomial() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns either the scientific name string (without authorship) for this non viral taxon name if its rank is genus or higher (monomial) or the string for the genus part of it if its rank is lower than genus (bi- or trinomial).
getGenusOrUninomialNameCache(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getGeoScopes() - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
getHasProblem() - Method in interface eu.etaxonomy.cdm.model.common.IParsable
this flag will be set to true if the parseName method was unable to successfully parse the name
getHasProblem() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value of the flag indicating whether the used parser method was able to parse the taxon name string successfully (false) or not (true).
getHasProblem() - Method in interface eu.etaxonomy.cdm.model.reference.INomenclaturalReference
Returns the boolean value indicating whether the used parser method was able to parse the string designating the reference successfully (false) or not (true).
getHasProblem() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns the boolean value of the flag indicating whether the used parser method was able to parse the string designating this reference successfully (false) or not (true).
getHeight() - Method in class eu.etaxonomy.cdm.model.media.ImageFile
 
getHeterotypicSynonymyGroups() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the ordered list of all homotypical groups heterotypic synonyms of this taxon belongs to.
getHigherAndEqualTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getHigherTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getHighestTerm() - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getHomotypicalGroup() - Method in interface eu.etaxonomy.cdm.model.name.ITypeDesignation
Returns the homotypical group that is typified in this type designation.
getHomotypicalGroup() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the homotypical group to which this taxon name belongs.
getHomotypicalGroup() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Returns the homotypical group to which all (in this type designation) typified taxon names belong.
getHomotypicalGroups() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the synonyms property.
getHomotypicGroup() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Returns the homotypical group of the taxon name used in this (abstract) taxon.
getHomotypicSynonymsByHomotypicGroup() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Retrieves the ordered list (depending on the date of publication) of homotypic synonyms (according to the same reference as for this taxon) under the condition that the taxon names of these synonyms and the taxon name of this taxon belong to the same homotypical group.
getHomotypicSynonymsByHomotypicRelationship() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Retrieves the ordered list (depending on the date of publication) of homotypic synonyms (according to the same reference as for this taxon) under the condition that these synonyms and this taxon are involved in synonym relationships with an "is homotypic synonym of" synonym relationship type.
getHomotypicSynonymyGroups() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the ordered list of all homotypical groups synonyms of this taxon belongs to.
getHowpublished() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string describing how this BibTeX reference was published, if the publishing method was nonstandard.
getHybridName() - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
Returns the botanical taxon name that plays the child role (the child is actually the hybrid taxon name) in this hybrid relationship.
getHybridRelationships() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the set of all hybrid relationships in which this botanical taxon name is involved.
getId() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
getId() - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
Returns local unique identifier for the concrete subclass
getIdentificationDate() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
getIdentifiedUnit() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
getIdInSource() - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
GETTER /SETTER
getIdNamespace() - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
getInBook() - Method in class eu.etaxonomy.cdm.model.reference.BookSection
Returns the book this book section belongs to.
getIncludes() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getIndex(TreeNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getIndividualCount() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getInfraGenericEpithet() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the genus subdivision epithet string (infrageneric part) for this non viral taxon name if its rank is infrageneric (lower than genus and higher than species aggregate: binomial).
getInfraGenusNameCache(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getInfraSpeciesNameCache(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getInfraSpecificEpithet() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the species subdivision epithet string (infraspecific part) for this non viral taxon name if its rank is infraspecific (lower than species: trinomial).
getInJournal() - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns the journal in which this article has been published.
getInProceedings() - Method in class eu.etaxonomy.cdm.model.reference.InProceedings
Returns the proceedings this "in proceedings" (usually a paper or an abstract) is part of.
getInSeries() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Returns the printed series this printed unit belongs to.
getInstitute() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Returns the institution corresponding to this institutional membership.
getInstitute() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getInstitution() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the name of the institution that was involved in the publishing of this BibTeX reference or the name of its publisher, if it is a "TECHREPORT" (report).
getInstitution() - Method in class eu.etaxonomy.cdm.model.reference.Report
Returns the institution in which this report has been elaborated.
getInstitutionalMemberships() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the set of institution memberships corresponding to this person.
getInverseDescription() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getInverseDescription(Language) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getInverseLabel() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getInverseLabel(Language) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getInverseRepresentation(Language) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getInverseRepresentations() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
getIsbn() - Method in class eu.etaxonomy.cdm.model.reference.Book
Returns the string representing the ISBN (International Standard Book Number, a unique numerical commercial book identifier, based upon the 9-digit Standard Book Numbering code) of this book.
getIso3166_A2() - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
Get 2 character ISO 3166 Country code
getIso639_1() - Method in class eu.etaxonomy.cdm.model.common.Language
Get the according iso639-1 alpha-2 language code http://www.loc.gov/standards/iso639-2/
getIso639_2() - Method in class eu.etaxonomy.cdm.model.common.Language
Get the according iso639-2 alpha-3 language code http://www.loc.gov/standards/iso639-2/
getIsPartOf() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Returns the parent institution of this institution.
getIssn() - Method in class eu.etaxonomy.cdm.model.reference.Journal
Returns the string representing the ISSN (International Standard Serial Number, a unique eight-digit number used to identify a periodical publication) of this journal.
getJournal() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the journal or magazine title this BibTeX reference with the entry type "ARTICLE" was published in.
getKeywords() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the set of keywords mostly representing a taxonomic or a geographical specialization of this person.
getKindOf() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getLabel() - Method in class eu.etaxonomy.cdm.model.common.Representation
 
getLabel() - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getLabel(Language) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getLanguage() - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
getLanguage() - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
 
getLanguageLabel() - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
getLanguageLabel(Language) - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
getLastname() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the string representing the hereditary name (surname or family name) (for instance "Smith") of this person.
getLatitude() - Method in class eu.etaxonomy.cdm.model.location.Point
 
getLength() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getLevel() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getLifespan() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the period of time in which this person was alive (life span).
getLifeStage() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getLinkbackUrl() - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
getLocality() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the town (possibly with locality or suburb) involved in this postal address.
getLocality() - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
getLocation() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the geophysical location (coordinates) of this postal address.
getLocus() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getLongitude() - Method in class eu.etaxonomy.cdm.model.location.Point
 
getLowerAndEqualTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getLowerTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getLowestTerm() - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getLsid() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
getLsid() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
getMarkedObj() - Method in class eu.etaxonomy.cdm.model.common.Marker
 
getMarkers() - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
getMarkerType() - Method in class eu.etaxonomy.cdm.model.common.Marker
 
getMax() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getMedia() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getMedia() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
getMedia() - Method in class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
getMedia() - Method in interface eu.etaxonomy.cdm.model.media.IMediaDocumented
 
getMedia() - Method in interface eu.etaxonomy.cdm.model.media.IMediaEntity
Gets all media belonging to this object
getMedia() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
getMedia() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getMediaCreated() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getMediaRepresentation() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
getter /setter
getMembers() - Method in class eu.etaxonomy.cdm.model.view.View
 
getMimeType() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
getter /setter
getMin() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getMisappliedNames() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of taxa playing the source role in taxon relationships (with taxon relationship type "misapplied name for") where this taxon plays the target role.
getModifier() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
getModifiers() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
getModifiers() - Method in class eu.etaxonomy.cdm.model.description.StateData
 
getModifiers() - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
getModifyingText() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
getModifyingText() - Method in class eu.etaxonomy.cdm.model.description.StateData
 
getMonth() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string with the month of publication (or, if unpublished, the month of creation) of this BibTeX reference.
getMultilanguageSet() - Method in class eu.etaxonomy.cdm.model.description.TextData
 
getMultilanguageText() - Method in class eu.etaxonomy.cdm.model.description.TextData
 
getName() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Returns the full name, as distinct from a code, an acronym or initials, by which this institution is generally known.
getName() - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
 
getName() - Method in class eu.etaxonomy.cdm.model.molecular.Locus
 
getName() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getName() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Returns the taxon name used in this (abstract) taxon.
getName() - Method in class eu.etaxonomy.cdm.model.view.View
 
getNameApprobation() - Method in class eu.etaxonomy.cdm.model.name.BacterialName
Returns the string representing the reason for the approbation of this bacterial taxon name.
getNameAuthorSeperator() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
String that separates the NameCache part from the AuthorCache part
getNameCache() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns or generates the nameCache (scientific name without author strings and year) string for this non viral taxon name.
getNameCache(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.name.INonViralNameCacheStrategy
returns the composed scientific taxon name string without authors nor year
getNameCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Generates and returns the "name cache" (only scientific name without author teams and year).
getNameRelations() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of all name relationships in which this taxon name is involved.
getNameTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Returns the set of name type designations that typify the taxon names belonging to this homotypical group including the status of these designations.
getNameTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of name type designations assigned to this taxon name the rank of which must be above "species".
getNewTaxonNameInstance(Rank) - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Creates a new particular taxon name (botanical, zoological, cultivar plant, bacterial or viral name) instance depending on this nomenclature code only containing the given rank.
getNewTermSet() - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getNewTermSet() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getNextHigherTerm(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getNextLowerTerm(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getNextVersion() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Returns the succeeding version of this object with the same UUID
getNomenclaturalCitation(String) - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns a formatted string containing the entire citation used for nomenclatural purposes based on this article - including (abbreviated) title of the journal but not authors of the article - and on the given details.
getNomenclaturalCitation(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns a formatted string containing the entire citation used for nomenclatural purposes based on this BibTeX reference - including (abbreviated) title but not authors - and on the given details.
getNomenclaturalCitation(String) - Method in class eu.etaxonomy.cdm.model.reference.Book
Returns a formatted string containing the entire citation used for nomenclatural purposes based on this book - including (abbreviated) title but not authors - and on the given details.
getNomenclaturalCitation(String) - Method in class eu.etaxonomy.cdm.model.reference.BookSection
Returns a formatted string containing the entire citation used for nomenclatural purposes based on this book section - including (abbreviated) book title, book authors, book section title but not its authors - and on the given details.
getNomenclaturalCitation(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns a formatted string containing the entire citation used for nomenclatural purposes based on this generic reference - including (abbreviated) title but not authors - and on the given details.
getNomenclaturalCitation(String) - Method in interface eu.etaxonomy.cdm.model.reference.INomenclaturalReference
Returns a formatted string containing the reference citation excluding authors but including the details as used in a taxon name.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.BacterialName
Returns the nomenclatural code that governs the construction of this bacterial taxon name, that is the International Code of Nomenclature of Bacteria.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the nomenclatural code that governs the construction of this botanical taxon name, that is the International Code of Botanical Nomenclature.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
Returns the nomenclatural code that governs the construction of this cultivar taxon name, that is the International Code of Nomenclature for Cultivated Plants.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns null as nomenclatural code that governs the construction of this non viral taxon name since there is no specific nomenclatural code defined.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns null as the nomenclatural code that governs the construction of this taxon name since there is no specific nomenclatural code defined.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Returns the nomenclatural code that governs the construction of this viral taxon name, that is the International Code of Virus Classification and Nomenclature.
getNomenclaturalCode() - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns the nomenclatural code that governs the construction of this zoological taxon name, that is the International Code of Zoological Nomenclature.
getNomenclaturalMicroReference() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the details string of the nomenclatural reference assigned to this taxon name.
getNomenclaturalReference() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the nomenclatural reference of this taxon name.
getNomenclaturalStatusTypeByAbbreviation(String) - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type identified through its label abbreviation.
getNomenclaturalTitle() - Method in interface eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor
 
getNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.agent.Team
Generates or returns the nomenclatural identification string for this team.
getNomenclaturalTitle() - Method in class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
Returns the identification string (nomenclatural abbreviation) used in nomenclature for this person or this team.
getNomenclaturalTitle(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.agent.INomenclaturalAuthorCacheStrategy
returns the composed name string without author or year
getNomenclaturalTitle(Person) - Method in class eu.etaxonomy.cdm.strategy.cache.agent.PersonDefaultCacheStrategy
 
getNomenclaturalTitle(Team) - Method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.ArticleDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BibtexDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.GenericDefaultCacheStrategy
 
getNomRefTitleWithoutYearAndAuthor(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
getNonMembers() - Method in class eu.etaxonomy.cdm.model.view.View
 
getNonViralNameInstance(String, NomenclaturalCode) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
getNonViralNameInstance(String, NomenclaturalCode, Rank) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
getNote() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string with miscellaneous extra information for this BibTeX reference.
getNumber() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing, if applicable, either the number of this BibTeX reference if it is a "TECHREPORT" (report) or of the journal in which this BibTeX reference was published if it is an "ARTICLE".
getOrderedTerms(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
getOrderRelevant() - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
 
getOrganization() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the name of the organization responsible for the conference in the context of which this BibTeX reference ("PROCEEDINGS", "INPROCEEDINGS" or a "CONFERENCE") has been printed.
getOrganization() - Method in class eu.etaxonomy.cdm.model.reference.Proceedings
Returns the string representing the organization responsible for the conference in the context of which this conference proceedings has been printed.
getOriginalNameString() - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
getOriginalPublicationYear() - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns the publication year (as an integer) of the original validly published species epithet for this zoological taxon name.
getOriginals() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
getOriginals() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getOriginalUnit() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
for derived units get the single next higher parental/original unit.
getPages() - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns the string representing the page(s) where the content of this article is located within the journal issue.
getPages() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the pages range (separated either by commas or double-hyphens) of this BibTeX reference.
getPages() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the page(s) where the content of this generic reference is located.
getPages() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Returns the string representing the pages extent of this printed unit.
getPages() - Method in class eu.etaxonomy.cdm.model.reference.SectionBase
Returns the string representing the page(s) where the content of this section is located within the printed unit.
getParent() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
getParentName() - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
Returns the botanical taxon name that plays the parent role in this hybrid relationship.
getParentRelationships() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the set of all hybrid relationships in which this botanical taxon name is involved as a parent.
getPartOf() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getParts() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
getPeriod() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Returns the time period during which the person involved in this institutional membership belonged to the institution also involved in it.
getPersistentTerms() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getPersistentTitleCache() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
Deprecated. 
getPersistentVocabulary() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getPerson() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Returns the person involved in this institutional membership.
getPhone() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Returns the string representing the phone number included in this contact.
getPlacePublished() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the name of the place (mostly the city) where this generic reference has been published.
getPlacePublished() - Method in class eu.etaxonomy.cdm.model.reference.PublicationBase
Returns the string representing the name of the place (mostly the city) where this publication has been published.
getPobox() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns a string corresponding to the post office box involved in this postal address.
getPointApproximation() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getPostcode() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the post code number involved in this postal address.
getPreferredLanguageString(List<Language>) - Method in class eu.etaxonomy.cdm.model.common.MultilanguageSet
 
getPreferredRepresentation(Language) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getPreferredRepresentation(List<Language>) - Method in class eu.etaxonomy.cdm.model.common.TermBase
Returns the Representation in the preferred language.
getPrefix() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the string representing the prefix (for instance "Prof.
getPreservation() - Method in class eu.etaxonomy.cdm.model.occurrence.Specimen
 
getPreviousVersion() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
getPrintedUnit() - Method in class eu.etaxonomy.cdm.model.reference.SectionBase
Returns the printed unit to which this section belongs.
getProblems() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Not yet implemented
getPublicationYear() - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns the publication year (as an integer) for this zoological taxon name.
getPublicId() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getPublishedIn() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getPublisher() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the name of the publisher of this BibTeX reference.
getPublisher() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the name of the publisher of this generic reference.
getPublisher() - Method in class eu.etaxonomy.cdm.model.reference.PublicationBase
Returns the string representing the name of the publisher of this publication.
getRank() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the taxonomic rank of this taxon name.
getRankByAbbreviation(String) - Static method in class eu.etaxonomy.cdm.model.name.Rank
Returns the rank identified through an abbreviated name.
getRankByName(String) - Static method in class eu.etaxonomy.cdm.model.name.Rank
Returns the rank identified through a name.
getRankByNameOrAbbreviation(String) - Static method in class eu.etaxonomy.cdm.model.name.Rank
Returns the rank identified through a name (abbreviated or not).
getRanklessNameCache(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
PRIVATES
getRecommendedModifierEnumeration() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
getRecommendedStatisticalMeasures() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
getReference() - Method in class eu.etaxonomy.cdm.model.view.View
 
getReferences() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the taxonomicNames property.
getReferenceSystem() - Method in class eu.etaxonomy.cdm.model.location.Point
 
getReferenceYear() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the string containing the publication date (generally only year) of the nomenclatural reference for this taxon name, null if there is no nomenclatural reference.
getRegion() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the region or state involved in this postal address.
getRelatedFrom() - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
getRelatedTo() - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
getRelationsFromThisName() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of all name relationships in which this taxon name is involved as a source.
getRelationsFromThisTaxon() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all taxon relationships between two taxa in which this taxon is involved as a source.
getRelationships() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the relationships property.
getRelationsToThisName() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of all name relationships in which this taxon name is involved as a target.
getRelationsToThisTaxon() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all taxon relationships between two taxa in which this taxon is involved as a target.
getRelationType(Taxon) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Returns the set of synonym relationship types of the synonym relationships where the synonym is this synonym and the taxon is the given one.
getReportType() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string describing the kind of technical report (for instance "Research Note") this BibTeX reference ("TECHREPORT") is.
getRepresentation(Language) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getRepresentations() - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getRepresentations() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getRights() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
getRights() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
getRights() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getRole() - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Returns the string representing the role played by the person within the institution (or within the department) involved in this institutional membership.
getRoot() - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
getRootChildren() - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
getRuleConsidered() - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
Returns the ICBN rule considered (that is the article/note/recommendation in the nomenclatural code) for building the string representing the (child) hybrid taxon name within this hybrid relationship.
getRuleConsidered() - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
Returns the nomenclatural code rule considered (that is the article/note/recommendation in the nomenclatural code ruling the taxon name(s) of this nomenclatural status).
getRuleConsidered() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Returns the nomenclatural code rule considered (that is the article/note/recommendation in the nomenclatural code ruling the taxon name(s)) of this nomenclatural status.
getSchool() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the name of the school where this BibTeX reference (a "MASTERTHESIS" or a "PHDTHESIS") was written.
getSchool() - Method in class eu.etaxonomy.cdm.model.reference.Thesis
Returns the high school institution in which this report has been submitted.
getScopes() - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
getSec() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Returns the reference of this (abstract) taxon.
getSequence() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
getSequences() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
getSeries() - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns the string representing the series (within the journal) in which this article was published.
getSeries() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the series of books this BibTeX reference with the entry type "BOOK" or "INBOOK" was published in.
getSeries() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the series (for instance for books or within journals) - and series part - in which this generic reference was published.
getSeries() - Method in class eu.etaxonomy.cdm.model.reference.PrintSeries
Returns the string representing the title of this print series.
getSeriesPart() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Returns the string representing the series part identifying this printed unit within the the printed series it belongs to.
getSex() - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
getShape() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getSize() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
getSortIndex() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
getSourcedObj() - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
getSources() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
getSources() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
getSources() - Method in interface eu.etaxonomy.cdm.model.common.ISourceable
 
getSpeciesNameCache(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getSpecificEpithet() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the species epithet string for this non viral taxon name if its rank is species aggregate or lower (bi- or trinomial).
getSpecimenTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Returns the set of specimen type designations that typify the taxon names belonging to this homotypical group including the status of these designations.
getSpecimenTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of specimen type designations that typify this taxon name.
getSpecimenTypeDesignationsOfHomotypicalGroup() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of specimen type designations assigned to this taxon name.
getStart() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
getState() - Method in class eu.etaxonomy.cdm.model.description.StateData
 
getStates() - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
 
getStatisticalValues() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getStatus() - Method in class eu.etaxonomy.cdm.model.description.Distribution
 
getStatus() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of nomenclatural status assigned to this taxon name according to its corresponding nomenclature code.
getStoredAt() - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
getStoredUnder() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
getStreet() - Method in class eu.etaxonomy.cdm.model.agent.Address
Returns the street name and number involved in this postal address.
getStringData() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getSubGenusAuthorship() - Method in class eu.etaxonomy.cdm.model.name.BacterialName
Returns the string containing the authorship with the year and details of the reference in which the subgenus included in the scientific name of this bacterial taxon name was published.
getSuffix() - Method in class eu.etaxonomy.cdm.model.agent.Person
Returns the string representing the suffix (for instance "Junior") of this person's name.
getSuffix() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
getSuperCollection() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getSuperViews() - Method in class eu.etaxonomy.cdm.model.view.View
 
getSupportedCategoricalEnumerations() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
getSynonym() - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Returns the synonym involved in this synonym relationship.
getSynonymNames() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all taxon names used as synonyms of this ("accepted/correct") taxon.
getSynonymRelations() - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Returns the set of all synonym relationships in which this synonym is involved.
getSynonymRelations() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all synonym relationships in which this ("accepted/correct") taxon is involved.
getSynonyms() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the synonyms property.
getSynonyms() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of (junior) synonyms (according to any reference) that are based on this taxon name.
getSynonyms() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all synonyms of this ("accepted/correct") taxon.
getSynonymsInGroup(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Retrieves the ordered list (depending on the date of publication) of synonyms (according to a given reference) the taxon names of which belong to this homotypical group.
getSynonymsSortedByType() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all synonyms of this ("accepted/correct") taxon sorted by the different categories of synonym relationships.
getSystemId() - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
getTaggedName(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.name.INameCacheStrategy
Returns an array of name tokens that together make up the full name a token can be a String (for name parts), Rank, AuthorTeam (for entire authorship string), Date or ReferenceBase Example: ["Abies","alba",Rank.SUBSPECIES,"alpina",AuthorTeam("Greuther (L.)")]
getTaggedName(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NameCacheStrategyBase
 
getTaggedName(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getTaxa() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of taxa ("accepted/correct" names according to any reference) that are based on this taxon name.
getTaxon() - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
getTaxon() - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
getTaxon2() - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
getTaxonBases() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the taxa property as Collection
getTaxonBases() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of taxon bases that refer to this taxon name.
getTaxonBases_() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
 
getTaxonName() - Method in class eu.etaxonomy.cdm.model.description.TaxonNameDescription
 
getTaxonomicChildren() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of taxa which have this taxon as next higher taxon (parent) within the taxonomic tree.
getTaxonomicChildrenCount() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the number of taxa which have this taxon as next higher taxon (parent) within the taxonomic tree and the number of which is stored in the TaxonomicChildrenCount attribute.
getTaxonomicNames() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the taxonomicNames property.
getTaxonomicParent() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the taxon which is the next higher taxon (parent) of this taxon within the taxonomic tree and which is stored in the TaxonomicParentCache attribute.
getTaxonRelations() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the set of all taxon relationships between two taxa in which this taxon is involved either as a source or as a target.
getTeamMembers() - Method in class eu.etaxonomy.cdm.model.agent.Team
Returns the list of members belonging to this team.
getTermByUuid(UUID) - Method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
getTermByUuid(UUID) - Method in interface eu.etaxonomy.cdm.model.common.init.IVocabularyStore
ATTENTION: Be aware that TermLoader indirectly calls getTermByUuid(uuid) for the default language.
getTermClass() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getTerms() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the terms property.
getTerms() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getTermsOrderedByLabels(Language) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
Returns all terms of this vocabulary sorted by their representation defined by the given language.
getTermSourceUri() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getTermVocabularies() - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Gets the value of the term vocabularies property.
getTestDescription() - Static method in class eu.etaxonomy.cdm.datagenerator.TaxonGenerator
 
getTestTaxon() - Static method in class eu.etaxonomy.cdm.datagenerator.TaxonGenerator
 
getText() - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
getText(Language) - Method in class eu.etaxonomy.cdm.model.common.MultilanguageSet
 
getText() - Method in class eu.etaxonomy.cdm.model.common.Representation
 
getText(Language) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
getTimeperiod() - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
getTimeperiod() - Method in interface eu.etaxonomy.cdm.model.common.IEvent
 
getTitle() - Method in class eu.etaxonomy.cdm.model.media.Media
 
getTitle() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing the title of this BibTeX reference.
getTitle() - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
Returns a string representing the title of this reference.
getTitleCache() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
getTitleCache() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
getTitleCache(Person) - Method in class eu.etaxonomy.cdm.strategy.cache.agent.PersonDefaultCacheStrategy
 
getTitleCache(Team) - Method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
 
getTitleCache(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy
 
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NameCacheStrategyBase
Generates and returns the "full name cache" (including scientific name, author teams and eventually year).
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy
 
getTitleCache(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.reference.INomenclaturalReferenceCacheStrategy
returns the composed scientific taxon name string without authors nor year
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
getTitleCache(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
 
getTokenizedNomenclaturalTitel(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy
 
getTokenizedNomenclaturalTitel(T) - Method in interface eu.etaxonomy.cdm.strategy.cache.reference.INomenclaturalReferenceCacheStrategy
returns the composed author string
getTokenizedNomenclaturalTitel(T) - Method in class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
getToName() - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
Returns the taxon name that plays the target role in this taxon name relationship.
getToTaxon() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Returns the taxon involved as a target in this taxon relationship.
getTownOrLocation() - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
getType() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
getType() - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
getType() - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Same as getFeature()
getType() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
Deprecated. 
getType() - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
getType() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getType() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
getType() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Returns the nomenclatural status type of this nomenclatural status.
getType() - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
getType() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the entry type of this BibTeX reference.
getTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Returns the set of all type designations that typify the taxon names belonging to this homotypical group (this includes either name type designations or specimen type designations).
getTypeDesignations() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the set of type designations assigned to this taxon name.
getTypeName() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Returns the taxon name that plays the role of the taxon name type in this taxon name type designation.
getTypes() - Method in class eu.etaxonomy.cdm.model.agent.Institution
Returns the set of institution types (categories) used to describe or circumscribe this institution's activities.
getTypeSpecimen() - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Returns the derived unit (specimen or figure) that is used in this specimen type designation to typify the taxon name.
getTypeStatus() - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Returns the type designation status for this specimen type designation.
getTypicalLowerBoundary() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getTypicalUpperBoundary() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getTypifiedNames() - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Returns the set of taxon names that belong to this homotypical group.
getTypifiedNames() - Method in interface eu.etaxonomy.cdm.model.name.ITypeDesignation
Returns the set of taxon names included in the homotypical group typified in this type designation.
getTypifiedNames() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Returns the set of taxon names typified in this type designation.
getUnit() - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
getUpdated() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
getUpdatedBy() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
getUri() - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
getUri() - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
getUri() - Method in class eu.etaxonomy.cdm.model.media.Rights
 
getUri() - Method in class eu.etaxonomy.cdm.model.molecular.GenBankAccession
 
getUri() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns the Uniform Resource Identifier (URI) corresponding to this reference.
getUrl() - Method in class eu.etaxonomy.cdm.model.agent.Contact
Returns the string representing the "Uniform Resource Locator" (url) included in this contact.
getUsedSequences() - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
getUuid() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
getUuid() - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
 
getUuid() - Method in interface eu.etaxonomy.cdm.model.common.IRelated
 
getUUID(UUID) - Static method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.agent.PersonDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.ArticleDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BibtexDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.GenericDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
 
getUuid() - Method in class eu.etaxonomy.cdm.strategy.StrategyBase
 
getValidFrom() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
based on created
getValidPeriod() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getValidPeriod() - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
getValidTo() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
based on updated
getValue() - Method in class eu.etaxonomy.cdm.model.common.Extension
 
getValue() - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
getVocabulary() - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
getVocabulary() - Method in interface eu.etaxonomy.cdm.model.common.ILoadableTerm
 
getVocabularyByUuid(UUID) - Method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
getVocabularyByUuid(UUID) - Method in interface eu.etaxonomy.cdm.model.common.init.IVocabularyStore
 
getVolume() - Method in class eu.etaxonomy.cdm.model.reference.Article
Returns the string representing the volume of the journal in which this article was published.
getVolume() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string representing either the volume of this BibTeX reference if it is a "BOOK" or of the journal in which this BibTeX reference was published if it is an "ARTICLE".
getVolume() - Method in class eu.etaxonomy.cdm.model.reference.Generic
Returns the string representing the volume (for instance for books or within journals) in which this generic reference was published.
getVolume() - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
Returns the string representing the volume of this printed unit.
getWaterbodiesOrCountries() - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
getWidth() - Method in class eu.etaxonomy.cdm.model.media.ImageFile
 
getYear() - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
getYear() - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Returns the string with the year of publication (or, if unpublished, the year of creation) of this BibTeX reference.
getYear() - Method in interface eu.etaxonomy.cdm.model.reference.INomenclaturalReference
Returns a string representation for the year of publication / creation of a reference.
getYear() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns a string containing the date (mostly only the year) of publication / creation of this reference.
getYear() - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
Returns a string representation for the year of publication / creation of this reference.
GRAFTCHIMAERA() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
GREX() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 

H

hashCode() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
Overrides Object.hashCode() See hibernate109, geocities or ibm for more information about equals and hashcode.
hashCode(Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
hashCode() - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
Overrides CdmBase.hashCode() See http://www.hibernate.org/109.html, http://www.geocities.com/technofundo/tech/java/equalhash.html or http://www.ibm.com/developerworks/java/library/j-jtp05273.html for more information about equals and hashcode.
hasListeners(String) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
hasProblem() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns exactly the same boolean value as the getHasProblem method.
hasSynonyms() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the boolean value indicating whether this taxon has at least one synonym (true) or not (false).
hasTaxonomicChildren() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the boolean value indicating whether this taxon has at least one taxonomic child taxon within the taxonomic tree (true) or not (false).
hasTaxonRelationships() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns the boolean value indicating whether this taxon is at least involved in one taxon relationship between two taxa (true), either as a source or as a target, or not (false).
HETEROTYPIC_SYNONYM_OF() - Static method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Returns the synonym relationship type "is heterotypic synonym of" ("is taxonomic synonym of" in zoology).
HINDI() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
HOLOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "holotype" designation status.
HOMOTYPIC_SYNONYM_OF() - Static method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Returns the synonym relationship type "is homotypic synonym of" ("is nomenclatural synonym of" in zoology).
HomotypicalGroup - Class in eu.etaxonomy.cdm.model.name
The homotypical group class represents a set of taxon names associated on the base of their typifications.
HomotypicalGroup() - Constructor for class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Class constructor: creates a new homotypical group instance with an empty set of typified taxon names.
homotypicalGroups - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
HYBRID_PARENT() - Static method in class eu.etaxonomy.cdm.model.description.Feature
special kind of OrganismInteraction
HybridRelationship - Class in eu.etaxonomy.cdm.model.name
The class representing a hybrid relationship between one of the parents of a hybrid taxon name and the hybrid taxon name itself.
HybridRelationship(BotanicalName, BotanicalName, HybridRelationshipType, String) - Constructor for class eu.etaxonomy.cdm.model.name.HybridRelationship
Class constructor: creates a new hybrid relationship instance with no reference and adds it to the respective botanical taxon name relation sets of both involved names.
HybridRelationship(BotanicalName, BotanicalName, HybridRelationshipType, ReferenceBase, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.HybridRelationship
Class constructor: creates a new hybrid relationship instance including its reference source and adds it to the respective botanical taxon name relation sets of both involved names.
HybridRelationshipType - Class in eu.etaxonomy.cdm.model.name
The class representing the categories of hybrid relationships between a botanical taxon name used as a parent of a hybrid taxon name and the hybrid taxon name itself.
HybridRelationshipType() - Constructor for class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Class constructor: creates a new empty hybrid relationship type instance.
HybridRelationshipType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Class constructor: creates an additional hybrid relationship type instance with a description (in the default language), a label, a label abbreviation and the flags indicating whether this new hybrid relationship type is symmetric and/or transitive.

I

ICBN() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the International Code of Botanical Nomenclature
ICdmBase - Interface in eu.etaxonomy.cdm.model.common
 
ICNB() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the International Code of Nomenclature of Bacteria
ICNCP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the International Code of Cultivated Plants
ICONOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "iconotype" designation status.
ICVCN() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the International Code for Virus Classification and Nomenclature
ICZN() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Returns the International Code of Zoological Nomenclature
IdentifiableEntity<T extends IdentifiableEntity> - Class in eu.etaxonomy.cdm.model.common
Superclass for the primary CDM classes that can be referenced from outside via LSIDs and contain a simple generated title string as a label for human reading.
IdentifiableEntity() - Constructor for class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
IdentificationKey - Class in eu.etaxonomy.cdm.model.description
Dichotomous or multifurcating authored keys (incl. legacy data)
IdentificationKey() - Constructor for class eu.etaxonomy.cdm.model.description.IdentificationKey
 
IdentifyableMediaEntity - Class in eu.etaxonomy.cdm.model.media
 
IdentifyableMediaEntity() - Constructor for class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
IEvent - Interface in eu.etaxonomy.cdm.model.common
 
IIdentifiableEntitiy<T extends IdentifiableEntity> - Interface in eu.etaxonomy.cdm.model.common
 
IIdentifiableEntityCacheStrategy<T extends IdentifiableEntity> - Interface in eu.etaxonomy.cdm.strategy.cache.common
 
ILLEGITIMATE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "illegitimate" ("invalid" for zoological names).
ILoadableTerm - Interface in eu.etaxonomy.cdm.model.common
 
ImageFile - Class in eu.etaxonomy.cdm.model.media
 
ImageFile() - Constructor for class eu.etaxonomy.cdm.model.media.ImageFile
 
ImageFile(String, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.ImageFile
 
ImageFile(String, Integer, Integer, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.ImageFile
 
IMediaDocumented - Interface in eu.etaxonomy.cdm.model.media
 
IMediaEntity - Interface in eu.etaxonomy.cdm.model.media
If a class is implementing this interface a set of media may be added to an instance of this class.
IMPORTED() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
INameCacheStrategy<T extends TaxonNameBase> - Interface in eu.etaxonomy.cdm.strategy.cache.name
A name cache rendering strategy for all TaxonNameBase subclasses.
INBOOK() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "inbook": a part of a book, which may be a chapter (or section or whatever) and/or a range of pages.
INCLUDES() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "includes".
INCOLLECTION() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "incollection": a part of a book having its own title.
incrementIndex(OrderedTermVocabulary<OrderedTermBase>) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
Deprecated. 
indexChangeAllowed(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
IndividualsAssociation - Class in eu.etaxonomy.cdm.model.description
{type is "host" or "hybrid_parent"}
IndividualsAssociation() - Constructor for class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Constructor
INFRACLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRADIVISION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAFAMILY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAGENERICTAXON() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAGENUS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAKINGDOM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAORDER() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRAPHYLUM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRASPECIES() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRASPECIFICTAXON() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
INFRATRIBE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
initialize() - Method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
initialize() - Method in interface eu.etaxonomy.cdm.model.common.init.IVocabularyStore
Initializes the IVocabularStore by making sure that all basic terms that are loaded by the TermLoader are available afterwards.
INomenclaturalAuthor - Interface in eu.etaxonomy.cdm.model.agent
Interface providing methods for nomenclatural authorship.
INomenclaturalAuthorCacheStrategy<T extends TeamOrPersonBase> - Interface in eu.etaxonomy.cdm.strategy.cache.agent
 
INomenclaturalReference<T extends ReferenceBase> - Interface in eu.etaxonomy.cdm.model.reference
Interface providing methods for nomenclatural references.
INomenclaturalReferenceCacheStrategy<T extends ReferenceBase> - Interface in eu.etaxonomy.cdm.strategy.cache.reference
A reference cache rendering strategy for all subclasses implementing INomenclaturalReference.
INonViralNameCacheStrategy<T extends NonViralName> - Interface in eu.etaxonomy.cdm.strategy.cache.name
A name cache rendering strategy for all TaxonNameBase subclasses.
INonViralNameParser<T extends TaxonNameBase> - Interface in eu.etaxonomy.cdm.strategy.parser
Supplies several parser methods for non viral taxon name strings and for nomenclatural reference strings.
INPROCEEDINGS() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "inproceedings": an article in a conference proceedings.
InProceedings - Class in eu.etaxonomy.cdm.model.reference
This class represents isolated parts (usually papers or abstracts) within conference proceedings.
InProceedings() - Constructor for class eu.etaxonomy.cdm.model.reference.InProceedings
 
insertDefaultTerms(Class, boolean) - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
insertDefaultTerms(Class, String, boolean) - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
insertDefaultTerms() - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
insertTerms(Class<ILoadableTerm>, String, boolean, boolean) - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
Institution - Class in eu.etaxonomy.cdm.model.agent
This class represents public or private institutions.
Institution() - Constructor for class eu.etaxonomy.cdm.model.agent.Institution
Class constructor.
InstitutionalMembership - Class in eu.etaxonomy.cdm.model.agent
This class allows to hold one institution to which a person is affiliated.
InstitutionalMembership() - Constructor for class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
 
InstitutionalMembership(Institution, Person, TimePeriod, String, String) - Constructor for class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Class constructor using an institution, a person, a time period, a department name string and a role string.
institutionalMemberships - Variable in class eu.etaxonomy.cdm.model.agent.Person
 
InstitutionType - Class in eu.etaxonomy.cdm.model.agent
Represents an element of a controlled vocabulary for different kinds of institutions.
InstitutionType() - Constructor for class eu.etaxonomy.cdm.model.agent.InstitutionType
Class constructor: creates a new empty institution type.
InstitutionType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.agent.InstitutionType
Class constructor using a description (in the default language), a label and a label abbreviation.
INVALID() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "invalid" (this corresponds to "not available" for zoological names).
INVALID_DESIGNATION_FOR() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the taxon relationship type "is invalid designation for".
invokeSetMethod(Method, Object) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
invokeSetMethodWithNull(Method, Object) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
IParsable - Interface in eu.etaxonomy.cdm.model.common
 
IReferenceBaseCacheStrategy<T extends ReferenceBase> - Interface in eu.etaxonomy.cdm.strategy.cache.reference
A reference cache rendering strategy for all subclasses of ReferenceBase.
IReferencedEntity - Interface in eu.etaxonomy.cdm.model.common
 
IRelated<T extends RelationshipBase> - Interface in eu.etaxonomy.cdm.model.common
PLEASE LOOK AT NameRelationship and TaxonRelationship
IS_DOUBTFUL() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
isAnamorphic() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the boolean value of the flag indicating whether the specimen type of this botanical taxon name for a fungus is asexual (true) or not (false).
isAutonym(NonViralName) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
isBarcode() - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
isBinomHybrid() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the boolean value of the flag indicating whether this botanical taxon name is the name of an interspecific hybrid (true) or not (false).
isCodeCompliant() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the boolean value "false" since the components of this taxon name cannot follow the rules of a corresponding nomenclatural code which is not defined for this class.
isCodeCompliant() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value "false" since the components of this taxon name cannot follow the rules of a corresponding nomenclatural code which is not defined for this class.
isCodeCompliant() - Method in class eu.etaxonomy.cdm.model.name.ViralName
Returns the boolean value "true" if the components of this viral taxon name follow the rules of the corresponding International Code of Virus Classification and Nomenclature, "false" otherwise.
isConservedType() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Returns the boolean value "true" if the competent authorities decided to conserve the use of the species taxon name as the type for this taxon name type designation.
isDescriptionSeparated() - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
isDoubtful() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Returns the boolean value indicating whether the assignment of this (abstract) taxon to the Taxon or to the Synonym class is definitive (false) or not (true).
isGenus() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the boolean value indicating whether this rank is the genus rank (true) or not (false).
isGenus() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether the taxonomic rank of this taxon name is the genus rank (true) or not (false).
isHigher(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
If this term is higher than the parameter term, true is returned, else false.
isHomotypic(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether a given taxon name belongs to the same homotypical group as this taxon name (true) or not (false).
isHybridFormula() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the boolean value of the flag indicating whether the name of this botanical taxon name is a hybrid formula (true) or not (false).
isIllegitimateType() - Method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the boolean value indicating whether the nomenclatural status type of the first taxon name involved in a name relationship with this name relationship type should be "illegitimate" (true) or not (false).
isIllegitimateType() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the boolean value indicating whether this nomenclatural status type is itself "illegitimate" or a kind of "illegitimate" (true) or not (false) - this corresponds to "invalid" for zoological names -.
isInfraGeneric() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the boolean value indicating whether this rank is higher than the species rank and lower than the genus rank (true) or not (false).
isInfraGeneric() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether the taxonomic rank of this taxon name is higher than the species rank and lower than the genus rank (true) or not (false).
isInfraSpecific() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the boolean value indicating whether this rank is lower than the species rank (true) or not (false).
isInfraSpecific() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether the taxonomic rank of this taxon name is lower than the species rank (true) or not (false).
isInvalidType() - Method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the boolean value indicating whether the nomenclatural status type of the first taxon name involved in a name relationship with this name relationship type should be "invalid" (true) or not (false).
isInvalidType() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the boolean value indicating whether this nomenclatural status type is itself "invalid" or a kind of "invalid" (true) or not (false) - this corresponds to "not available" for zoological names -.
isLeaf() - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
isLectoType() - Method in interface eu.etaxonomy.cdm.model.name.ITypeDesignation
 
isLectoType() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Returns the boolean value "true" if the use of the species taxon name as the type for this taxon name type designation was posterior to the publication of the typified taxon name.
isLectoType() - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Returns the boolean value indicating whether this specimen type designation has a "lectotype" status (true) or not (false).
isLectotype() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the boolean value indicating whether this type designation status is itself "lectotype" or a kind of "lectotype" (true) or not (false).
isLegitimateType() - Method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the boolean value indicating whether the nomenclatural status type of the first taxon name involved in a name relationship with this name relationship type should be "legitimate" (true) or not (false).
isLegitimateType() - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the boolean value indicating whether this nomenclatural status type is itself "legitimate" or a kind of "legitimate" (true) or not (false). - this corresponds to "valid" for zoological names -.
isLower(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
If this term is lower than the parameter term, true is returned, else false.
isMonomHybrid() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the boolean value of the flag indicating whether this botanical taxon name is the name of an intergeneric hybrid (true) or not (false).
isMutable() - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
isNomenclaturallyRelevant() - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
Returns "true" if the isNomenclaturallyRelevant flag is set.
isNotDesignated() - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Returns the boolean value "true" if it is known that a type does not exist and therefore the taxon name to which this type designation is assigned must still be typified.
ISOEPITYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "isoepitype" designation status.
ISOLECTOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "isolectotype" designation status.
ISONEOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "isoneotype" designation status.
isOriginalCombination() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Indicates whether this taxon name is a basionym or a replaced synonym of any other taxon name.
ISOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "isotype" designation status.
ISourceable - Interface in eu.etaxonomy.cdm.model.common
 
isPartial() - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Returns "true" if the ProParte flag is set.
isProParte() - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Returns "true" if the ProParte flag is set.
isProtectedAuthorshipCache() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the boolean value of the flag intended to protect (true) or not (false) the authorshipCache (complete authorship string) of this non viral taxon name.
isProtectedNameCache() - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Returns the boolean value of the flag intended to protect (true) or not (false) the nameCache (scientific name without author strings and year) string of this non viral taxon name.
isProtectedTitleCache() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
isProtectedTitleCache() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
isRejectedType() - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Returns the boolean value "true" if the competent authorities decided to reject the use of the species taxon name as the type for this taxon name type designation.
isSaveable() - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
Returns the boolean value indicating whether this (abstract) taxon might be saved (true) or not (false).
isSpecies() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the boolean value indicating whether this rank is the species rank (true) or not (false).
isSpecies() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether the taxonomic rank of this taxon name is the species rank (true) or not (false).
isSupportsCommonTaxonName() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupportsDistribution() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupportsIndividualAssociation() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupportsQuantitativeData() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupportsTaxonInteraction() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupportsTextData() - Method in class eu.etaxonomy.cdm.model.description.Feature
 
isSupraGeneric() - Method in class eu.etaxonomy.cdm.model.name.Rank
Returns the boolean value indicating whether this rank is higher than the genus rank (true) or not (false).
isSupraGeneric() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Returns the boolean value indicating whether the taxonomic rank of this taxon name is higher than the genus rank (true) or not (false).
isSymmetric() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
isTransitive() - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
IStrategy<T> - Interface in eu.etaxonomy.cdm.strategy
 
isTrinomHybrid() - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns the boolean value of the flag indicating whether this botanical taxon name is the name of an infraspecific hybrid (true) or not (false).
ITALIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
iterator() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
iterator() - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Returns an iterator over the set of taxa which are taxonomic children of this taxon.
ITypeDesignation - Interface in eu.etaxonomy.cdm.model.name
 
IVocabularyStore - Interface in eu.etaxonomy.cdm.model.common.init
Terms, vocabularies, and representations loaded during termloading by class TermLoader added by the user maybe stored and accessed through this interface.

J

JAPANESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
Journal - Class in eu.etaxonomy.cdm.model.reference
This class represents journals.
Journal() - Constructor for class eu.etaxonomy.cdm.model.reference.Journal
Class constructor: creates a new empty journal instance only containing the default cache strategy.
JournalDefaultCacheStrategy<T extends Journal> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 

K

KEY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
Keyword - Class in eu.etaxonomy.cdm.model.common
simple keywords. could be taxonomic scope/skill , geographic scope or anything else
Keyword() - Constructor for class eu.etaxonomy.cdm.model.common.Keyword
 
Keyword(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.Keyword
 
KINGDOM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 

L

Language - Class in eu.etaxonomy.cdm.model.common
list of languages according to current internet best practices as given by IANA or ISO codes.
Language() - Constructor for class eu.etaxonomy.cdm.model.common.Language
 
Language(UUID) - Constructor for class eu.etaxonomy.cdm.model.common.Language
 
Language(char[], char[], String, String) - Constructor for class eu.etaxonomy.cdm.model.common.Language
 
Language(String, String, String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Language
 
Language(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.Language
 
language - Variable in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
LANGUAGE() - Static method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
LanguageString - Class in eu.etaxonomy.cdm.model.common
 
LanguageString() - Constructor for class eu.etaxonomy.cdm.model.common.LanguageString
 
LanguageString(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.LanguageString
 
LanguageStringBase - Class in eu.etaxonomy.cdm.model.common
 
LanguageStringBase() - Constructor for class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
LanguageStringBase(String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
LATER_HOMONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "later homonym" name relationship type.
LATER_VALIDATED_BY_NAME() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "later validated by name" name relationship type.
LATIN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
LECTOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "lectotype" designation status.
LEGITIMATE() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "legitimate" ("valid" for zoological names).
LICENSE() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
 
LivingBeing - Class in eu.etaxonomy.cdm.model.occurrence
 
LivingBeing() - Constructor for class eu.etaxonomy.cdm.model.occurrence.LivingBeing
Constructor
Locus - Class in eu.etaxonomy.cdm.model.molecular
The region name of a DNA string.
Locus() - Constructor for class eu.etaxonomy.cdm.model.molecular.Locus
 
logger - Static variable in class eu.etaxonomy.cdm.model.common.MarkerType
 
logger - Static variable in class eu.etaxonomy.cdm.model.location.NamedAreaType
 
LsInputImpl - Class in eu.etaxonomy.cdm.jaxb
 
LsInputImpl() - Constructor for class eu.etaxonomy.cdm.jaxb.LsInputImpl
 

M

main(String[]) - Static method in class eu.etaxonomy.cdm.model.location.TdwgArea
 
makeDefaultTermsInserted() - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
makeDefaultTermsInserted(IVocabularyStore) - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
MALE_PARENT() - Static method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Returns the "male parent" hybrid relationship type.
MANUAL() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "manual" (a technical documentation).
Map - Class in eu.etaxonomy.cdm.model.reference
This class represents published maps from which information can be derived.
Map() - Constructor for class eu.etaxonomy.cdm.model.reference.Map
 
Marker - Class in eu.etaxonomy.cdm.model.common
This class aims to make available some "flags" for identifiable entities in a flexible way.
Marker(MarkerType, boolean) - Constructor for class eu.etaxonomy.cdm.model.common.Marker
Constructor
markers - Variable in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
MarkerType - Class in eu.etaxonomy.cdm.model.common
Marker types similar to dynamically defined attributes.
MarkerType() - Constructor for class eu.etaxonomy.cdm.model.common.MarkerType
Constructor
MarkerType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.MarkerType
Constructor
marshal(DataSet, Writer) - Method in class eu.etaxonomy.cdm.jaxb.CdmDocumentBuilder
 
marshal(DateTime) - Method in class eu.etaxonomy.cdm.jaxb.DateTimeAdapter
 
marshal(String) - Method in class eu.etaxonomy.cdm.jaxb.UUIDAdapter
 
MASTERTHESIS() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "masterthesis" (a master's thesis).
MATERIALS_EXAMINED() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
MATERIALS_METHODS() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
MAX() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
MeasurementUnit - Class in eu.etaxonomy.cdm.model.description
This class contains the measurement units such as "centimeter" or "degree Celsius"
MeasurementUnit() - Constructor for class eu.etaxonomy.cdm.model.description.MeasurementUnit
Constructor
MeasurementUnit(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.MeasurementUnit
 
Media - Class in eu.etaxonomy.cdm.model.media
 
Media() - Constructor for class eu.etaxonomy.cdm.model.media.Media
Constructor
MediaRepresentation - Class in eu.etaxonomy.cdm.model.media
metadata for an external file such as images, phylogenetic trees, or audio recordings available through the location attribute!
MediaRepresentation() - Constructor for class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
MediaRepresentationPart - Class in eu.etaxonomy.cdm.model.media
 
MediaRepresentationPart() - Constructor for class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
MediaRepresentationPart(String, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
merge(HomotypicalGroup) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Merges the typified taxon names from one homotypical group into the set of typified taxon names of this homotypical group.
MICRO_REFERENCE_TOKEN - Static variable in interface eu.etaxonomy.cdm.model.reference.INomenclaturalReference
 
MIN() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
MISAPPLIED_NAME_FOR() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the taxon relationship type "is misapplied name for".
MISC() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "misc" used when nothing else fits.
Modifier - Class in eu.etaxonomy.cdm.model.description
This class contains possible modulations for the InfoItems such as "variance", "maximum", "often", "probably"
Modifier() - Constructor for class eu.etaxonomy.cdm.model.description.Modifier
Constructor
Modifier(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Modifier
 
MovieFile - Class in eu.etaxonomy.cdm.model.media
 
MovieFile() - Constructor for class eu.etaxonomy.cdm.model.media.MovieFile
Constructor
MovieFile(String, Integer) - Constructor for class eu.etaxonomy.cdm.model.media.MovieFile
Constructor
MultilanguageSet - Class in eu.etaxonomy.cdm.model.common
 
MultilanguageSet() - Constructor for class eu.etaxonomy.cdm.model.common.MultilanguageSet
 
MultilanguageSet(LanguageString) - Constructor for class eu.etaxonomy.cdm.model.common.MultilanguageSet
Constructor

N

NameAuthorSeperator - Variable in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
NameCacheStrategyBase<T extends TaxonNameBase> - Class in eu.etaxonomy.cdm.strategy.cache.name
 
NameCacheStrategyBase() - Constructor for class eu.etaxonomy.cdm.strategy.cache.name.NameCacheStrategyBase
 
NamedArea - Class in eu.etaxonomy.cdm.model.location
 
NamedArea() - Constructor for class eu.etaxonomy.cdm.model.location.NamedArea
Constructor
NamedArea(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.NamedArea
 
NamedAreaLevel - Class in eu.etaxonomy.cdm.model.location
Controlled vocabulary to diferenciate levels of areas such as province, state, etc.
NamedAreaLevel() - Constructor for class eu.etaxonomy.cdm.model.location.NamedAreaLevel
Constructor
NamedAreaLevel(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
NamedAreaType - Class in eu.etaxonomy.cdm.model.location
Controlled vocabulary to diferenctiate categories of areas
NamedAreaType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.NamedAreaType
Constructor
NamedAreaType() - Constructor for class eu.etaxonomy.cdm.model.location.NamedAreaType
 
NameRelationship - Class in eu.etaxonomy.cdm.model.name
The class representing a relationship between two taxon names according to the nomenclatural code which governs both of them.
NameRelationship(TaxonNameBase, TaxonNameBase, NameRelationshipType, String) - Constructor for class eu.etaxonomy.cdm.model.name.NameRelationship
Class constructor: creates a new name relationship instance with no reference and adds it to the respective taxon name relation sets of both involved names.
NameRelationship(TaxonNameBase, TaxonNameBase, NameRelationshipType, ReferenceBase, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.NameRelationship
Class constructor: creates a new name relationship instance including its reference source and adds it to the respective taxon name relation sets of both involved names.
NameRelationshipType - Class in eu.etaxonomy.cdm.model.name
The class representing the categories of taxon name relationships between two taxon names.
NameRelationshipType() - Constructor for class eu.etaxonomy.cdm.model.name.NameRelationshipType
Class constructor: creates a new empty name relationship type instance.
NameRelationshipType(String, String, String, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.name.NameRelationshipType
Class constructor: creates an additional name relationship type instance with a description, a label, a label abbreviation and the flags indicating whether this new name relationship type is symmetric and/or transitive.
NameTypeDesignation - Class in eu.etaxonomy.cdm.model.name
The class representing a typification of a taxon name with a rank above "species aggregate" by another taxon name.
NameTypeDesignation() - Constructor for class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Class constructor: creates a new empty name type designation.
NameTypeDesignation(TaxonNameBase, ReferenceBase, String, String, boolean, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.name.NameTypeDesignation
Class constructor: creates a new name type designation instance (including its reference source and eventually the taxon name string originally used by this reference when establishing the former designation).
NATURAL_AREA() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
The boundaries are given by natural factors (mountains, valleys, climate, etc.)
NATURE_RESERVE() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
NEOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "neotype" designation status.
NewDefaultLanguageInstance(String) - Static method in class eu.etaxonomy.cdm.model.common.Annotation
Factory method.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.agent.Institution
Creates a new empty institution instance.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.agent.Person
Creates a new empty instance for a person whose existence is all what is known.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.agent.Team
Creates a new team instance without any concrete members.
NewInstance(String, Language) - Static method in class eu.etaxonomy.cdm.model.common.Annotation
Factory method.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.Figure
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.Keyword
 
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.common.Keyword
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
NewInstance(UUID) - Static method in class eu.etaxonomy.cdm.model.common.Language
 
NewInstance(String, Language) - Static method in class eu.etaxonomy.cdm.model.common.LanguageString
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.Marker
Factory method
NewInstance(MarkerType, boolean) - Static method in class eu.etaxonomy.cdm.model.common.Marker
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.MultilanguageSet
Factory method
NewInstance(LanguageString) - Static method in class eu.etaxonomy.cdm.model.common.MultilanguageSet
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.OriginalSource
Factory method
NewInstance(String) - Static method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
NewInstance(String, String) - Static method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
NewInstance(String, String, String, Language) - Static method in class eu.etaxonomy.cdm.model.common.Representation
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
Factory method
NewInstance(Calendar) - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
Factory method
NewInstance(Calendar, Calendar) - Static method in class eu.etaxonomy.cdm.model.common.TimePeriod
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.AbsenceTerm
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.CategoricalData
Factory method
NewInstance(String, Language) - Static method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
Factory method.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Distribution
Creates an empty distribution.
NewInstance(NamedArea, PresenceAbsenceTermBase) - Static method in class eu.etaxonomy.cdm.model.description.Distribution
Creates a distribution and sets the area and status.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
NewInstance(Feature) - Static method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
NewInstance(UUID) - Static method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
NewInstance(List<Feature>) - Static method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.IdentificationKey
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.MeasurementUnit
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Modifier
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.PresenceTerm
 
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.PresenceTerm
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.QuantitativeData
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Scope
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.Scope
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Sex
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.SpecimenDescription
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.Stage
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.Stage
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.State
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.State
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.StateData
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
NewInstance(Taxon) - Static method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.TaxonNameDescription
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.TextData
 
NewInstance(Feature) - Static method in class eu.etaxonomy.cdm.model.description.TextData
 
NewInstance(String, Language, TextFormat) - Static method in class eu.etaxonomy.cdm.model.description.TextData
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.description.TextFormat
 
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.description.TextFormat
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.Continent
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.Continent
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.NamedArea
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaType
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.Point
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.ReferenceSystem
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.ReferenceSystem
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
Factory method
NewInstance(String, Integer) - Static method in class eu.etaxonomy.cdm.model.media.AudioFile
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.AudioFile
Factory method
NewInstance(String, Integer) - Static method in class eu.etaxonomy.cdm.model.media.ImageFile
 
NewInstance(String, Integer, Integer, Integer) - Static method in class eu.etaxonomy.cdm.model.media.ImageFile
 
NewInstance(String, Integer, MediaMetaData.ImageMetaData) - Static method in class eu.etaxonomy.cdm.model.media.ImageFile
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.Media
Factory method
NewInstance(String, String) - Static method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
Factory method
NewInstance(String, Integer) - Static method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
Factory method
NewInstance(String, Integer) - Static method in class eu.etaxonomy.cdm.model.media.MovieFile
 
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.MovieFile
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.Rights
Factory method
NewInstance(String, Language) - Static method in class eu.etaxonomy.cdm.model.media.Rights
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.media.RightsTerm
Factory method
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.BacterialName
Creates a new bacterial taxon name instance only containing its rank and the default cache strategy.
NewInstance(Rank, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.BacterialName
Creates a new bacterial taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Creates a new botanical taxon name instance only containing its rank and the default cache strategy.
NewInstance(Rank, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Creates a new botanical taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NewInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Creates a new botanical taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
Creates a new cultivar taxon name instance only containing its rank and the default cache strategy.
NewInstance(Rank, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
Creates a new cultivar taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Creates a new homotypical group instance with an empty set of typified taxon names.
NewInstance(NomenclaturalStatusType) - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Creates a new nomenclatural status instance with a given nomenclatural status type.
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.NonViralName
Creates a new non viral taxon name instance only containing its rank and the default cache strategy.
NewInstance(Rank, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.NonViralName
Creates a new non viral taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.ViralName
Creates a new viral taxon name instance only containing its rank.
NewInstance(Rank) - Static method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Creates a new zoological taxon name instance only containing its rank and the default cache strategy.
NewInstance(Rank, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Creates a new zoological taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NewInstance(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Static method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Creates a new zoological taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.Collection
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.occurrence.DeterminationModifier
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.Fossil
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.LivingBeing
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.Observation
Factory method
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.occurrence.PreservationMethod
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.occurrence.Specimen
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Article
Creates a new empty article instance only containing the default cache strategy.
NewInstance(Journal, TeamOrPersonBase, String, String, String, String, TimePeriod) - Static method in class eu.etaxonomy.cdm.model.reference.Article
Creates a new article instance with the given values and with the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Creates a new empty BibTeX entry type instance.
NewInstance(String, String, String) - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Creates an additional BibTeX entry type instance with a description (in the default language), a label and a label abbreviation.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexReference
Creates a new empty BibTeX reference instance only containing the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Book
Creates a new empty book instance only containing the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.BookSection
Creates a new empty book section instance only containing the default cache strategy.
NewInstance(Book, TeamOrPersonBase, String, String) - Static method in class eu.etaxonomy.cdm.model.reference.BookSection
Creates a new book section instance with its given book, title, pages and author (team) and its default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Database
Creates a new empty database instance.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Generic
Creates a new empty generic reference instance only containing the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.InProceedings
Creates a new empty "in proceedings" instance.
NewInstance(Proceedings) - Static method in class eu.etaxonomy.cdm.model.reference.InProceedings
Creates a new "in proceedings" instance with the given proceedings it belongs to.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Journal
Creates a new empty journal instance only containing the default cache strategy.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Map
Creates a new empty map instance.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Patent
Creates a new empty patent instance
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.PersonalCommunication
Creates a new empty personal communication instance.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.PrintSeries
Creates a new empty print series instance.
NewInstance(String) - Static method in class eu.etaxonomy.cdm.model.reference.PrintSeries
Creates a new print series instance with a given title string.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Proceedings
Creates a new empty proceedings instance.
NewInstance(String) - Static method in class eu.etaxonomy.cdm.model.reference.Proceedings
Creates a new proceedings instance with the given organization responsible for the conference.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Report
Creates a new empty report instance
NewInstance(Institution) - Static method in class eu.etaxonomy.cdm.model.reference.Report
Creates a new report instance with the given institution.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.Thesis
Creates a new empty thesis instance
NewInstance(Institution) - Static method in class eu.etaxonomy.cdm.model.reference.Thesis
Creates a new thesis instance with the given high school institution.
NewInstance() - Static method in class eu.etaxonomy.cdm.model.reference.WebPage
Creates a new empty web page instance.
NewInstance(TaxonNameBase, ReferenceBase) - Static method in class eu.etaxonomy.cdm.model.taxon.Synonym
Creates a new synonym instance with the taxon name used and the reference using it as a synonym and not as an ("accepted/correct") taxon.
NewInstance(TaxonNameBase, ReferenceBase) - Static method in class eu.etaxonomy.cdm.model.taxon.Taxon
Creates a new (accepted/correct) taxon instance with the taxon name used and the reference using it.
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.agent.PersonDefaultCacheStrategy
 
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.agent.TeamDefaultCacheStrategy
 
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.name.BotanicNameDefaultCacheStrategy
 
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.ArticleDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.BibtexDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.BookDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.BookSectionDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.GenericDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.JournalDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.cache.reference.StrictReferenceBaseDefaultCacheStrategy
Factory method
NewInstance() - Static method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
NewMediaInstance(Calendar, Agent, String, String, String, Integer, Integer, Integer) - Static method in class eu.etaxonomy.cdm.model.media.ImageFile
Generated an instance of Media that contains one MediaRepresentation consisting of one ImageFile
NewTitledInstance(String) - Static method in class eu.etaxonomy.cdm.model.agent.Person
Creates a new instance for a person for whom an "identification" string is all what is known.
NoDefinedTermClassException - Exception in eu.etaxonomy.cdm.model.common
 
NoDefinedTermClassException() - Constructor for exception eu.etaxonomy.cdm.model.common.NoDefinedTermClassException
 
NoDefinedTermClassException(String) - Constructor for exception eu.etaxonomy.cdm.model.common.NoDefinedTermClassException
 
NoDefinedTermClassException(Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.NoDefinedTermClassException
 
NoDefinedTermClassException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.NoDefinedTermClassException
 
NomenclaturalCode - Class in eu.etaxonomy.cdm.model.name
The class for the five nomenclature codes (ICNB, ICBN, ICNCP, ICZN and ICVCN) ruling taxon names.
NomenclaturalCode() - Constructor for class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Class constructor: creates a new empty nomenclature code instance.
NomenclaturalCode(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.NomenclaturalCode
Class constructor: creates an additional nomenclature code instance with a description (in the default language), a label and a label abbreviation.
NomenclaturalStatus - Class in eu.etaxonomy.cdm.model.name
The class representing the assignation of a nomenclatural status to a taxon name.
NomenclaturalStatus() - Constructor for class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
Class constructor: creates a new empty nomenclatural status instance.
NomenclaturalStatusType - Class in eu.etaxonomy.cdm.model.name
The class representing categories of nomenclatural status (like "invalid", "conserved" or "novum") to qualify the use of a particular taxon name string depending on its nomenclatural reference (original publication), on its nomenclatural code and on possible decisions of the corresponding competent authorities.
NomenclaturalStatusType() - Constructor for class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Class constructor: creates a new empty nomenclatural status type instance.
NomenclaturalStatusType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Class constructor: creates an additional nomenclatural status type instance with a description (in the default language), a label and a label abbreviation.
nomenclaturalTitle - Variable in class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
 
NomRefDefaultCacheStrategyBase<T extends ReferenceBase> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
NomRefDefaultCacheStrategyBase() - Constructor for class eu.etaxonomy.cdm.strategy.cache.reference.NomRefDefaultCacheStrategyBase
 
NonViralName<T extends NonViralName> - Class in eu.etaxonomy.cdm.model.name
The taxon name class for all non viral taxa.
NonViralName() - Constructor for class eu.etaxonomy.cdm.model.name.NonViralName
Class constructor: creates a new non viral taxon name instance only containing the default cache strategy.
NonViralName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.NonViralName
Class constructor: creates a new non viral taxon name instance only containing its rank, its homotypical group and the default cache strategy.
NonViralName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.NonViralName
Class constructor: creates a new non viral taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
NonViralNameDefaultCacheStrategy<T extends NonViralName> - Class in eu.etaxonomy.cdm.strategy.cache.name
 
NonViralNameDefaultCacheStrategy() - Constructor for class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
Constructor
NonViralNameParserImpl - Class in eu.etaxonomy.cdm.strategy.parser
 
NonViralNameParserImpl() - Constructor for class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
NORTH_AMERICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
NOT_CONGRUENT_TO() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is not congruent to".
NOT_INCLUDED_IN() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "is not included in".
NOT_PROTECTED - Variable in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
NOVUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "novum".
NUDUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "nudum".
nullSafeGet(ResultSet, String[], Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
nullSafeSet(PreparedStatement, Object, int) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 

O

Observation - Class in eu.etaxonomy.cdm.model.occurrence
 
Observation() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Observation
Constructor
OCCURRENCE() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
OCEANIA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
OPUS_UTIQUE_OPPR() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "opus utique oppressum".
ORDER() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
OrderedTermBase<T extends OrderedTermBase> - Class in eu.etaxonomy.cdm.model.common
 
OrderedTermBase() - Constructor for class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
OrderedTermBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
OrderedTermVocabulary<T extends OrderedTermBase> - Class in eu.etaxonomy.cdm.model.common
 
OrderedTermVocabulary() - Constructor for class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
OrderedTermVocabulary(String, String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
orderIndex - Variable in class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
OriginalSource - Class in eu.etaxonomy.cdm.model.common
Other names/labels/titles (abreviated or not) for the same object (person, reference, source, etc.)
OriginalSource() - Constructor for class eu.etaxonomy.cdm.model.common.OriginalSource
Constructor
ORTHOGRAPHIC_VARIANT() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "orthographic variant" name relationship type.
ORTHOGRAPHY_CONSERVED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "conserved (orthography)".
ORTHOGRAPHY_CONSERVED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be conserved (orthography)".
OVERLAPS() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the (concept) taxon relationship type "overlaps".

P

PARALECTOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "paralectotype" designation status.
PARANEOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "paraneotype" designation status.
PARATYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "paratype" designation status.
parseCultivar(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
PARSED_NAME(String) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns a botanical taxon name based on parsing a string representing all elements (according to the ICBN) of a botanical taxon name (where the scientific name is an uninomial) including authorship but without nomenclatural reference.
PARSED_NAME(String, Rank) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns a botanical taxon name based on parsing a string representing all elements (according to the ICBN) of a botanical taxon name including authorship but without nomenclatural reference.
PARSED_NAME(String) - Static method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns a zoological taxon name based on parsing a string representing all elements (according to the ICZN) of a zoological taxon name (where the scientific name is an uninomial) including authorship but without nomenclatural reference.
PARSED_NAME(String, Rank) - Static method in class eu.etaxonomy.cdm.model.name.ZoologicalName
Returns a zoological taxon name based on parsing a string representing all elements (according to the ICZN)) of a zoological taxon name including authorship but without nomenclatural reference.
PARSED_REFERENCE(String) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns a botanical taxon name based on parsing a string representing all elements (according to the ICBN) of a botanical taxon name (where the scientific name is an uninomial) including authorship and nomenclatural reference.
PARSED_REFERENCE(String, Rank) - Static method in class eu.etaxonomy.cdm.model.name.BotanicalName
Returns a botanical taxon name based on parsing a string representing all elements (according to the ICBN) of a botanical taxon name including authorship and nomenclatural reference.
parsedTeam(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses an authorString (reprsenting a team into the single authors and add them to the return Team.
parseFullName(String) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
Parses the taxon name String and returns a TaxonNameBase.
parseFullName(String, NomenclaturalCode, Rank) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
Parses the taxon name String and returns a TaxonNameBase.
parseFullName(T, String, Rank, boolean) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
Parses the taxon name String and fills the result into the existing TaxonNameBase nameToBeFilled.
parseFullName(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseFullName(String, NomenclaturalCode, Rank) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseFullName(NonViralName, String, Rank, boolean) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseFullReference(String) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
 
parseFullReference(String, NomenclaturalCode, Rank) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
 
parseFullReference(T, String, Rank, boolean) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
 
parseFullReference(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseFullReference(String, NomenclaturalCode, Rank) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseFullReference(NonViralName, String, Rank, boolean) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseSimpleName(String, Rank) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
Parses the taxon name String and returns a TaxonNameBase.
parseSimpleName(String) - Method in interface eu.etaxonomy.cdm.strategy.parser.INonViralNameParser
Parses the taxon name String and returns a TaxonNameBase.
parseSimpleName(String, Rank) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
parseSimpleName(String) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
 
Patent - Class in eu.etaxonomy.cdm.model.reference
This class represents patents.
Patent() - Constructor for class eu.etaxonomy.cdm.model.reference.Patent
 
PATHOVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Person - Class in eu.etaxonomy.cdm.model.agent
This class represents human beings, living or dead.
Person(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.agent.Person
Class constructor using a "forenames" string (including initials), a surname (family name) and an abbreviated name as used in nomenclature.
PersonalCommunication - Class in eu.etaxonomy.cdm.model.reference
This class represents personal communications.
PersonalCommunication() - Constructor for class eu.etaxonomy.cdm.model.reference.PersonalCommunication
 
PersonDefaultCacheStrategy - Class in eu.etaxonomy.cdm.strategy.cache.agent
 
PHDTHESIS() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "phdthesis" (a Ph.D. thesis).
PHENOLOGY() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
PHOTOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "iconotype" designation status.
PhylogeneticTree - Class in eu.etaxonomy.cdm.model.molecular
 
PhylogeneticTree() - Constructor for class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
PHYLUM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Point - Class in eu.etaxonomy.cdm.model.location
 
Point() - Constructor for class eu.etaxonomy.cdm.model.location.Point
Constructor
POLISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
PORTUGUESE() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
PresenceAbsenceTermBase<T extends PresenceAbsenceTermBase> - Class in eu.etaxonomy.cdm.model.description
 
PresenceAbsenceTermBase() - Constructor for class eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase
Constructor
PresenceAbsenceTermBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.PresenceAbsenceTermBase
 
PresenceTerm - Class in eu.etaxonomy.cdm.model.description
 
PresenceTerm() - Constructor for class eu.etaxonomy.cdm.model.description.PresenceTerm
 
PresenceTerm(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.PresenceTerm
 
PreservationMethod - Class in eu.etaxonomy.cdm.model.occurrence
http://rs.tdwg.org/ontology/voc/Collection.rdf#SpecimenPreservationMethodTypeTerm
PreservationMethod(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.occurrence.PreservationMethod
Constructor
PrintedUnitBase - Class in eu.etaxonomy.cdm.model.reference
This (abstract) class represents printed published references which are recurrent products of publishing companies or of research organisations.
PrintedUnitBase() - Constructor for class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
PrintSeries - Class in eu.etaxonomy.cdm.model.reference
This class represents collections of printed published references which are grouped according to topic or any other feature.
PrintSeries() - Constructor for class eu.etaxonomy.cdm.model.reference.PrintSeries
 
PROCEEDINGS() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "proceedings" of a conference.
Proceedings - Class in eu.etaxonomy.cdm.model.reference
This class represents conference proceedings.
Proceedings() - Constructor for class eu.etaxonomy.cdm.model.reference.Proceedings
 
PROTECTED - Variable in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
protectedAuthorshipCache - Variable in class eu.etaxonomy.cdm.model.name.NonViralName
 
protectedNameCache - Variable in class eu.etaxonomy.cdm.model.name.NonViralName
 
PROTOLOG() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
PROVINCE() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
PROVISIONAL() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "provisional".
PublicationBase - Class in eu.etaxonomy.cdm.model.reference
This (abstract) class represents all different kind of published references which constitute a physical or virtual unit.
PublicationBase() - Constructor for class eu.etaxonomy.cdm.model.reference.PublicationBase
 
putText(String, Language) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
putText(LanguageString) - Method in class eu.etaxonomy.cdm.model.description.TextData
 

Q

QuantitativeData - Class in eu.etaxonomy.cdm.model.description
 
QuantitativeData() - Constructor for class eu.etaxonomy.cdm.model.description.QuantitativeData
Constructor

R

Rank - Class in eu.etaxonomy.cdm.model.name
The class representing the taxonomical ranks (like "Family", "Genus" or "Species") used for taxon names across all nomenclatural codes for bacteria (ICNB), viruses (ICVCN), plants and fungi (ICBN), cultivars (ICNCP) and animals (ICZN).
Rank() - Constructor for class eu.etaxonomy.cdm.model.name.Rank
Class constructor: creates a new empty rank instance.
Rank(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.Rank
Class constructor: creates an additional rank instance with a description (in the default language), a label and a label abbreviation.
RDF_FRAGMENT() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 
readCsvLine(List<String>) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
readCsvLine(List<String>, Language) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
readCsvLine(List<String>) - Method in interface eu.etaxonomy.cdm.model.common.ILoadableTerm
Fills the term with contents from a csvLine.
readCsvLine(List) - Method in class eu.etaxonomy.cdm.model.common.Language
 
readCsvLine(List) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
readCsvLine(List<String>) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
readCsvLine(List<String>, Language) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
readCsvLine(List<String>) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
readCsvLine(List, Language) - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Fills this nomenclatural status type with contents (uuid, uri, description text, label and label abbreviation) coming from a csv line.
readCsvLine(List) - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Fills this nomenclatural status type with contents (uuid, uri, description text, label and label abbreviation) coming from a csv line.
ReferenceBase - Class in eu.etaxonomy.cdm.model.reference
The upmost (abstract) class for references (information sources).
ReferenceBase() - Constructor for class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
ReferencedEntityBase - Class in eu.etaxonomy.cdm.model.common
abstract class for all objects that may have a reference
ReferencedEntityBase() - Constructor for class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
ReferencedEntityBase(ReferenceBase, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
ReferencedMedia - Class in eu.etaxonomy.cdm.model.media
 
ReferencedMedia() - Constructor for class eu.etaxonomy.cdm.model.media.ReferencedMedia
 
references - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
ReferenceSystem - Class in eu.etaxonomy.cdm.model.location
Reference systems for coordinates also according to OGC (Open Geographical Consortium) The list should be extensible at runtime through configuration.
ReferenceSystem(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.ReferenceSystem
Constructor
REJECTED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "rejected".
REJECTED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be rejected".
RelationshipBase<FROM extends IRelated,TO extends IRelated,TYPE extends RelationshipTermBase> - Class in eu.etaxonomy.cdm.model.common
 
RelationshipBase() - Constructor for class eu.etaxonomy.cdm.model.common.RelationshipBase
 
RelationshipBase(FROM, TO, TYPE, ReferenceBase, String) - Constructor for class eu.etaxonomy.cdm.model.common.RelationshipBase
Creates a relationship between 2 objects and adds it to the respective relation sets of both objects.
relationships - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
RelationshipTermBase<T extends RelationshipTermBase> - Class in eu.etaxonomy.cdm.model.common
 
RelationshipTermBase() - Constructor for class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
RelationshipTermBase(String, String, String, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
removeAddress(Address) - Method in class eu.etaxonomy.cdm.model.agent.Contact
Removes one element from the set of postal addresses of this contact.
removeAnnotation(Annotation) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
removeBasionym() - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes the basionym relationship from the set of name relationships to this taxon name.
removeChild(FeatureNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
removeChild(int) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
removeChromatogram(Media) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
removeCitation(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
removeContinents(Continent) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
removeCoveredTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.IdentificationKey
 
removeDefinition(Language) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
removeDerivationEvent(DerivationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
removeDerivative(DerivedUnitBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
removeDescribedSpecimenOrObservations(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
removeDescription(Language) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
removeDescription(Language) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
removeDescription(Language) - Method in class eu.etaxonomy.cdm.model.media.Media
 
removeDescription(TaxonNameDescription) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes one element from the set of taxon name descriptions assigned to this taxon name.
removeDescription(DescriptionBase) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
removeDescription(TaxonDescription) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Removes one element from the set of taxon descriptions assigned to this (accepted/correct) taxon.
removeDescriptionSource(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
removeDetermination(DeterminationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
removeElement(DescriptionElementBase) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
removeExtension(Extension) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
removeExtension(Extension) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
removeGenBankAccession(GenBankAccession) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
removeGeoScope(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
removeHybridRelationship(HybridRelationship) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
Removes one hybrid relationship from the set of hybrid relationships in which this botanical taxon name is involved.
removeIncludes(TermBase) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
removeInstitutionalMembership(InstitutionalMembership) - Method in class eu.etaxonomy.cdm.model.agent.Person
Removes one element from the set of institutional memberships of this person.
removeInverseRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
removeKeyword(Keyword) - Method in class eu.etaxonomy.cdm.model.agent.Person
Removes one element from the set of keywords for this person.
removeMarker(Marker) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
removeMedia(Media) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
removeMedia(Media) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
removeMedia(Media) - Method in class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
removeMedia(Media) - Method in interface eu.etaxonomy.cdm.model.media.IMediaEntity
Removes a media from this object
removeMember(ICdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
removeModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
removeModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
removeModifier(Modifier) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
removeModifyingText(Language) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
removeModifyingText(Language) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
removeNameRelationship(NameRelationship) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes one name relationship from one of both sets of name relationships in which this taxon name is involved.
removeNonMember(ICdmBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
removeOriginal(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
removePropertyChangeListener(PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
see PropertyChangeSupport.addPropertyChangeListener(PropertyChangeListener)
removePropertyChangeListener(String, PropertyChangeListener) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
removeRecommendedModifierEnumeration(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
removeRecommendedStatisticalMeasure(StatisticalMeasure) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
removeRepresentation(Representation) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
removeRepresentation(MediaRepresentation) - Method in class eu.etaxonomy.cdm.model.media.Media
 
removeRepresentationPart(MediaRepresentationPart) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
removeRights(Rights) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
removeRights(Rights) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
removeRights(Rights) - Method in class eu.etaxonomy.cdm.model.media.Media
 
removeScope(Scope) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
removeSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
removeSource(OriginalSource) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
removeSource(OriginalSource) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
removeSource(OriginalSource) - Method in interface eu.etaxonomy.cdm.model.common.ISourceable
 
removeState(State) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
 
removeStatisticalValue(StatisticalMeasurementValue) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
removeStatus(NomenclaturalStatus) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes one element from the set of nomenclatural status of this taxon name.
removeSuperView(View) - Method in class eu.etaxonomy.cdm.model.view.View
 
removeSupportedCategoricalEnumeration(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
removeSynonym(Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Removes the element(s) from the set of synonym relationships assigned to this ("accepted/correct") taxon in which the given synonym is involved.
removeSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
Removes one element from the set of synonym relationships assigned to this synonym.
removeSynonymRelation(SynonymRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Removes one element from the set of synonym relationships assigned to this (accepted/correct) taxon.
removeTaxonBase(TaxonBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes one element from the set of taxon bases that refer to this taxon name.
removeTaxonomicChild(Taxon) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Removes one taxon relationship with taxon relationship type "taxonomically included in" and with the given child taxon playing the source role from the set of "taxon relationships to" belonging to this taxon.
removeTaxonRelation(TaxonRelationship) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Removes one taxon relationship from one of both sets of taxon relationships in which this taxon is involved either as a source or as a target.
removeTeamMember(Person) - Method in class eu.etaxonomy.cdm.model.agent.Team
Removes one person from the list of members of this team.
removeTerm(T) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermVocabulary
 
removeTerm(T) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
removeText(Language) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
removeType(InstitutionType) - Method in class eu.etaxonomy.cdm.model.agent.Institution
Removes one element from the set of institution types for this institution.
removeTypeDesignation(TypeDesignationBase) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Removes one element from the set of type designations assigned to this taxon name.
removeTypifiedName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
Removes one element from the set of taxon names that belong to this homotypical group.
removeUsedSequences(Sequence) - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
removeWaterbodyOrCountry(WaterbodyOrCountry) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
replace(Object, Object, Object) - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
REPLACED_SYNONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "replaced synonym" name relationship type.
Report - Class in eu.etaxonomy.cdm.model.reference
This class represents reports.
Report() - Constructor for class eu.etaxonomy.cdm.model.reference.Report
 
Representation - Class in eu.etaxonomy.cdm.model.common
workaround for enumerations
Representation() - Constructor for class eu.etaxonomy.cdm.model.common.Representation
 
Representation(String, String, String, Language) - Constructor for class eu.etaxonomy.cdm.model.common.Representation
text represents an explanation/declaration ('The name is illegitimate according to ICBN'); label a string identifier ('illegitimate name'); abbreviatedLabel a shortened string for the label ('nom. illeg.')
resolveResource(String, String, String, String, String) - Method in class eu.etaxonomy.cdm.jaxb.CdmResourceResolver
 
returnedClass() - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
Rights - Class in eu.etaxonomy.cdm.model.media
Typically, rights information includes a statement about various property rights associated with the resource, including intellectual property rights.
Rights() - Constructor for class eu.etaxonomy.cdm.model.media.Rights
Default Constructor
Rights(String, Language) - Constructor for class eu.etaxonomy.cdm.model.media.Rights
Constructor
RightsTerm - Class in eu.etaxonomy.cdm.model.media
 
RightsTerm() - Constructor for class eu.etaxonomy.cdm.model.media.RightsTerm
Default Constructor
RightsTerm(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.media.RightsTerm
Constructor
RUSSIAN() - Static method in class eu.etaxonomy.cdm.model.common.Language
 

S

SAMPLE_SIZE() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
SANCTIONED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "sanctioned".
saveOrUpdate(TermVocabulary<DefinedTermBase>) - Method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
saveOrUpdate(ILoadableTerm) - Method in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
saveOrUpdate(TermVocabulary<DefinedTermBase>) - Method in interface eu.etaxonomy.cdm.model.common.init.IVocabularyStore
TODO
saveOrUpdate(ILoadableTerm) - Method in interface eu.etaxonomy.cdm.model.common.init.IVocabularyStore
TODO
Scope - Class in eu.etaxonomy.cdm.model.description
 
Scope() - Constructor for class eu.etaxonomy.cdm.model.description.Scope
Constructor
Scope(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Scope
 
SECOND_PARENT() - Static method in class eu.etaxonomy.cdm.model.name.HybridRelationshipType
Returns the "second parent" hybrid relationship type.
SECOND_STEP_LECTOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "second step lectotype" designation status.
SECOND_STEP_NEOTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "second step neotype" designation status.
SECTION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SectionBase - Class in eu.etaxonomy.cdm.model.reference
This (abstract) class represents isolated sections (parts, chapters or papers) within a printed unit.
SectionBase() - Constructor for class eu.etaxonomy.cdm.model.reference.SectionBase
 
Sequence - Class in eu.etaxonomy.cdm.model.molecular
 
Sequence() - Constructor for class eu.etaxonomy.cdm.model.molecular.Sequence
 
SERIES() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
setAbbreviatedLabel(String) - Method in class eu.etaxonomy.cdm.model.common.Representation
 
setAbbreviatedText(String) - Method in class eu.etaxonomy.cdm.model.media.Rights
 
setAbsoluteElevation(Integer) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setAbsoluteElevationError(Integer) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setAcceptedTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Sets the given ("accepted/correct") taxon to this synonym relationship.
setAccessionNumber(String) - Method in class eu.etaxonomy.cdm.model.molecular.GenBankAccession
 
setAcronym(String) - Method in class eu.etaxonomy.cdm.model.name.ViralName
 
setActor(Agent) - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
setActor(Agent) - Method in interface eu.etaxonomy.cdm.model.common.IEvent
 
setAddress(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setAddresses(Set<Address>) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
setAgent(Agent) - Method in class eu.etaxonomy.cdm.model.media.Rights
 
setAgentData(List<VersionableEntity>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the agentData property.
setAgents(List<Agent>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the agents property.
setAnamorphic(boolean) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setAnnotatedObj(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
setAnnotations(Set<Annotation>) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
setAnnote(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setAppendedPhrase(String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setArea(NamedArea) - Method in class eu.etaxonomy.cdm.model.description.Distribution
 
setArtist(Agent) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setAssociatedSpecimenOrObservation(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.description.IndividualsAssociation
 
setAuthorshipCache(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Assigns an authorshipCache string to this non viral taxon name.
setAuthorTeam(TeamOrPersonBase) - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
setAuthorYearSeperator(String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.ZooNameDefaultCacheStrategy
 
setBankNumber(String) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
setBarcode(boolean) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setBaseURI(String) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setBasionymAuthorCombinationAuthorSeperator(CharSequence) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
setBasionymAuthorTeam(INomenclaturalAuthor) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setBasionymEnd(String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
setBasionymStart(String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
setBinomHybrid(boolean) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setBooktitle(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setBreed(String) - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
 
setByteStream(InputStream) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setCacheStrategy(INonViralNameCacheStrategy) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setCacheStrategy(S) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setCacheStrategy(INameCacheStrategy) - Method in class eu.etaxonomy.cdm.model.name.ViralName
 
setCatalogNumber(String) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
setCertifiedText(boolean) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setChapter(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setCharacterStream(Reader) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setChildren(List<FeatureNode>) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
setChromatograms(Set<Media>) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setCitation(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
setCitation(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.media.ReferencedMedia
 
setCitationMicroReference(String) - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
setCitationMicroReference(String) - Method in class eu.etaxonomy.cdm.model.media.ReferencedMedia
 
setCitationMicroReference(String) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setCitations(Set<ReferenceBase>) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setCode(String) - Method in class eu.etaxonomy.cdm.model.agent.Institution
 
setCode(String) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setCodeStandard(String) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setCollectingArea(NamedArea) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setCollectingMethod(String) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setCollection(Collection) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
setCollector(Agent) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setCombinationAuthorTeam(INomenclaturalAuthor) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setCommentator(Person) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
setCompareLanguage(Language) - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
setConservedType(boolean) - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
 
setContact(Contact) - Method in class eu.etaxonomy.cdm.model.agent.Address
Adds this postal address to the set of addresses of a contact.
setContact(Contact) - Method in class eu.etaxonomy.cdm.model.agent.Institution
 
setContact(Contact) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setContinents(Set<Continent>) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
setCountry(WaterbodyOrCountry) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setCoveredTaxa(Set<Taxon>) - Method in class eu.etaxonomy.cdm.model.description.IdentificationKey
 
setCreated(DateTime) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
setCreated(DateTime) - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
Sets the timestamp this object was created.
setCreatedBy(Person) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
setCreatedBy(Person) - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
 
setCrossref(BibtexReference) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setCultivarName(String) - Method in class eu.etaxonomy.cdm.model.name.CultivarPlantName
 
setDatePublished(TimePeriod) - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
 
setDateSequenced(Calendar) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setDefaultLanguage(Language) - Method in class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
setDepartment(String) - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
 
setDerivationEvents(Set<DerivationEvent>) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setDerivatives(Set<DerivedUnitBase>) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
setDerivedFrom(DerivationEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
setDescribedSpecimenOrObservations(Set<SpecimenOrObservationBase>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
setDescription(String) - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
setDescription(String) - Method in class eu.etaxonomy.cdm.model.common.Representation
 
setDescription(MultilanguageSet) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setDescription(String) - Method in class eu.etaxonomy.cdm.model.molecular.Locus
 
setDescription(String) - Method in class eu.etaxonomy.cdm.model.view.View
 
setDescriptions(Set<TaxonNameDescription>) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setDescriptions(Set<DescriptionBase>) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setDescriptions(Set<TaxonDescription>) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
setDescriptionSeparated(boolean) - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
setDescriptionSources(Set<ReferenceBase>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
setDeterminations(Set<DeterminationEvent>) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setDeterminer(Agent) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
setDistanceToGround(Integer) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setDistanceToWaterSurface(Integer) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setDoubtful(boolean) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
 
setDuration(int) - Method in class eu.etaxonomy.cdm.model.media.AudioFile
 
setDuration(int) - Method in class eu.etaxonomy.cdm.model.media.MovieFile
 
setEdition(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setEdition(String) - Method in class eu.etaxonomy.cdm.model.reference.Book
 
setEditor(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setEditor(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setEditor(String) - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
setElements(Set<DescriptionElementBase>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionBase
 
setEmail(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
setEncoding(String) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setEnd(Calendar) - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
setEprint(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setErrorRadius(Integer) - Method in class eu.etaxonomy.cdm.model.location.Point
 
setExactLocation(Point) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setExAuthorSeperator(String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
setExBasionymAuthorTeam(INomenclaturalAuthor) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setExCombinationAuthorTeam(INomenclaturalAuthor) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setExtendedObj(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.Extension
 
setExtensions(Set<Extension>) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setFax(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
setFeature(Feature) - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
Deprecated. 
setFeature(Feature) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
setFeature(Feature) - Method in class eu.etaxonomy.cdm.model.description.Distribution
Deprecated. 
setFeature(Feature) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
setFieldNotes(String) - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
setFieldNumber(String) - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
setFirstname(String) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setFlag(boolean) - Method in class eu.etaxonomy.cdm.model.common.Marker
 
setFormat(TextFormat) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
setFromTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Sets the given taxon as a source in this taxon relationship.
setGatheringDate(Calendar) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setGatheringEvent(GatheringEvent) - Method in class eu.etaxonomy.cdm.model.occurrence.FieldObservation
 
setGenBankAccession(Set<GenBankAccession>) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setGeneralizationOf(Set<DefinedTermBase>) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setGenusOrUninomial(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setGeoScopes(Set<NamedArea>) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
setHasProblem(boolean) - Method in interface eu.etaxonomy.cdm.model.common.IParsable
 
setHasProblem(boolean) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setHasProblem(boolean) - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
setHeight(int) - Method in class eu.etaxonomy.cdm.model.media.ImageFile
 
setHomotypicalGroup(HomotypicalGroup) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Deprecated. 
setHomotypicalGroups(Set<HomotypicalGroup>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the synonyms property.
setHowpublished(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setHybridFormula(boolean) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setHybridName(BotanicalName) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
 
setHybridRelationships(Set<HybridRelationship>) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setId(int) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
setId(int) - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
Assigns a unique local ID to this object.
setIdentificationDate(Calendar) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
setIdentifiedUnit(SpecimenOrObservationBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
setIdInSource(String) - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
setIdNamespace(String) - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
setInBook(Book) - Method in class eu.etaxonomy.cdm.model.reference.BookSection
 
setIncludes(Set<DefinedTermBase>) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setIndividualCount(Integer) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setInfraGenericEpithet(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setInfraSpecificEpithet(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setInJournal(Journal) - Method in class eu.etaxonomy.cdm.model.reference.Article
 
setInProceedings(Proceedings) - Method in class eu.etaxonomy.cdm.model.reference.InProceedings
 
setInSeries(PrintSeries) - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
setInstitute(Institution) - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Assigns an new institution (replacing the actual one) to this institutional membership.
setInstitute(Institution) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setInstitution(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setInstitution(Institution) - Method in class eu.etaxonomy.cdm.model.reference.Report
 
setInstitutionalMemberships(Set<InstitutionalMembership>) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setInverseRepresentations(Set<Representation>) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
setIsbn(String) - Method in class eu.etaxonomy.cdm.model.reference.Book
 
setIso3166_A2(String) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
Set 2 character ISO 3166 Country code
setIso639_1(String) - Method in class eu.etaxonomy.cdm.model.common.Language
 
setIso639_2(String) - Method in class eu.etaxonomy.cdm.model.common.Language
 
setIsPartOf(Institution) - Method in class eu.etaxonomy.cdm.model.agent.Institution
Assigns a parent institution to which this institution belongs.
setIssn(String) - Method in class eu.etaxonomy.cdm.model.reference.Journal
 
setJournal(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setKeywords(Set<Keyword>) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setKindOf(DefinedTermBase) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setLabel(String) - Method in class eu.etaxonomy.cdm.model.common.Representation
 
setLanguage(Language) - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
setLanguage(Language) - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
 
setLastname(String) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setLatitude(Double) - Method in class eu.etaxonomy.cdm.model.location.Point
 
setLectoType(boolean) - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
 
setLength(Integer) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setLevel(NamedAreaLevel) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setLifespan(TimePeriod) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setLifeStage(Stage) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setLinkbackUrl(URL) - Method in class eu.etaxonomy.cdm.model.common.Annotation
 
setLocality(String) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setLocality(String) - Method in class eu.etaxonomy.cdm.model.occurrence.GatheringEvent
 
setLocation(Point) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setLocus(Locus) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setLongitude(Double) - Method in class eu.etaxonomy.cdm.model.location.Point
 
setLsid(String) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setLsid(String) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
setMarkedObj(AnnotatableEntity) - Method in class eu.etaxonomy.cdm.model.common.Marker
 
setMarkers(Set<Marker>) - Method in class eu.etaxonomy.cdm.model.common.AnnotatableEntity
 
setMarkerType(MarkerType) - Method in class eu.etaxonomy.cdm.model.common.Marker
 
setMedia(Set<Media>) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setMedia(Set<Media>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
setMedia(Set<Media>) - Method in class eu.etaxonomy.cdm.model.media.IdentifyableMediaEntity
 
setMedia(Media) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
Deprecated. 
setMediaCreated(Calendar) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setMediaRepresentation(MediaRepresentation) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
Deprecated. 
setMembers(Set<CdmBase>) - Method in class eu.etaxonomy.cdm.model.view.View
 
setMimeType(String) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
setModifier(DeterminationModifier) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
setModifiers(Set<Modifier>) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
setModifiers(Set<Modifier>) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
setModifyingText(MultilanguageSet) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
 
setMonomHybrid(boolean) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setMonth(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setMultilanguageText(Map<Language, LanguageString>) - Method in class eu.etaxonomy.cdm.model.description.TextData
 
setName(String) - Method in class eu.etaxonomy.cdm.model.agent.Institution
 
setName(String) - Method in class eu.etaxonomy.cdm.model.description.CommonTaxonName
 
setName(String) - Method in class eu.etaxonomy.cdm.model.molecular.Locus
 
setName(String) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setName(String) - Method in class eu.etaxonomy.cdm.model.view.View
 
setNameApprobation(String) - Method in class eu.etaxonomy.cdm.model.name.BacterialName
 
setNameAuthorSeperator(String) - Method in class eu.etaxonomy.cdm.strategy.cache.name.NonViralNameDefaultCacheStrategy
 
setNameCache(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
Assigns a nameCache string to this non viral taxon name and protects it from being overwritten.
setNextVersion(T) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
setNomenclaturallyRelevant(boolean) - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
setNomenclaturalMicroReference(String) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setNomenclaturalReference(INomenclaturalReference) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
Assigns a nomenclatural reference to this taxon name.
setNomenclaturalTitle(String) - Method in interface eu.etaxonomy.cdm.model.agent.INomenclaturalAuthor
 
setNomenclaturalTitle(String) - Method in class eu.etaxonomy.cdm.model.agent.Team
Assigns a nomenclatural identification string to this team and protects it from overwriting.
setNomenclaturalTitle(String, boolean) - Method in class eu.etaxonomy.cdm.model.agent.Team
Assigns a nomenclatural identification string to this team and a protection flag status to this string.
setNomenclaturalTitle(String) - Method in class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
 
setNonMembers(Set<CdmBase>) - Method in class eu.etaxonomy.cdm.model.view.View
 
setNotDesignated(boolean) - Method in class eu.etaxonomy.cdm.model.name.TypeDesignationBase
 
setNote(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setNumber(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setOrderRelevant(boolean) - Method in class eu.etaxonomy.cdm.model.description.CategoricalData
 
setOrganization(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setOrganization(String) - Method in class eu.etaxonomy.cdm.model.reference.Proceedings
 
setOriginalNameString(String) - Method in class eu.etaxonomy.cdm.model.common.ReferencedEntityBase
 
setOriginalPublicationYear(Integer) - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
 
setOriginals(Set<SpecimenOrObservationBase>) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
setPages(String) - Method in class eu.etaxonomy.cdm.model.reference.Article
 
setPages(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setPages(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setPages(String) - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
setPages(String) - Method in class eu.etaxonomy.cdm.model.reference.SectionBase
 
setParent(FeatureNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
setParentName(BotanicalName) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
 
setPartial(boolean) - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
 
setPartOf(DefinedTermBase) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setParts(List<MediaRepresentationPart>) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
setPeriod(TimePeriod) - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
 
setPersistentTerms(Set<T>) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
setPersistentTitleCache(String) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
Deprecated. 
setPersistentVocabulary(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setPerson(Person) - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
Assigns a new person (replacing the actual one) to this institutional membership.
setPhone(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
setPlacePublished(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setPlacePublished(String) - Method in class eu.etaxonomy.cdm.model.reference.PublicationBase
 
setPobox(String) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setPointApproximation(Point) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setPostcode(String) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setPrefix(String) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setPreservation(PreservationMethod) - Method in class eu.etaxonomy.cdm.model.occurrence.Specimen
 
setPreviousVersion(T) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
setProParte(boolean) - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
 
setProtectedAuthorshipCache(boolean) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setProtectedNameCache(boolean) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setProtectedTitleCache(boolean) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setProtectedTitleCache(boolean) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
setPublicationYear(Integer) - Method in class eu.etaxonomy.cdm.model.name.ZoologicalName
 
setPublicId(String) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setPublishedIn(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setPublisher(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setPublisher(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setPublisher(String) - Method in class eu.etaxonomy.cdm.model.reference.PublicationBase
 
setRank(Rank) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setRecommendedModifierEnumeration(Set<TermVocabulary>) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setRecommendedStatisticalMeasures(Set<StatisticalMeasure>) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setReference(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.view.View
 
setReferences(List<ReferenceBase>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the taxonomicNames property.
setReferenceSystem(ReferenceSystem) - Method in class eu.etaxonomy.cdm.model.location.Point
 
setRegion(String) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setRejectedType(boolean) - Method in class eu.etaxonomy.cdm.model.name.NameTypeDesignation
 
setRelatedFrom(FROM) - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
setRelatedTo(TO) - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
setRelationsFromThisTaxon(Set<TaxonRelationship>) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
setRelationships(Set<RelationshipBase>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the relationships property.
setRelationsToThisTaxon(Set<TaxonRelationship>) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
setReportType(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setRepresentations(Set<Representation>) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
setRepresentations(Set<MediaRepresentation>) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setRights(Set<Rights>) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setRights(Set<Rights>) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setRole(String) - Method in class eu.etaxonomy.cdm.model.agent.InstitutionalMembership
 
setRoot(FeatureNode) - Method in class eu.etaxonomy.cdm.model.description.FeatureTree
 
setRuleConsidered(String) - Method in class eu.etaxonomy.cdm.model.name.HybridRelationship
 
setRuleConsidered(String) - Method in class eu.etaxonomy.cdm.model.name.NameRelationship
 
setRuleConsidered(String) - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
 
setSchool(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setSchool(Institution) - Method in class eu.etaxonomy.cdm.model.reference.Thesis
 
setScopes(Set<Scope>) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
 
setSec(ReferenceBase) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonBase
 
setSequence(String) - Method in class eu.etaxonomy.cdm.model.molecular.Sequence
 
setSequences(Set<Sequence>) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
setSeries(String) - Method in class eu.etaxonomy.cdm.model.reference.Article
 
setSeries(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setSeries(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setSeries(String) - Method in class eu.etaxonomy.cdm.model.reference.PrintSeries
 
setSeriesPart(String) - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
setSex(Sex) - Method in class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
 
setShape(Media) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setSize(Integer) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
setSortIndex(int) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
setSourcedObj(IdentifiableEntity) - Method in class eu.etaxonomy.cdm.model.common.OriginalSource
 
setSources(Set<OriginalSource>) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setSpecificEpithet(String) - Method in class eu.etaxonomy.cdm.model.name.NonViralName
 
setStart(Calendar) - Method in class eu.etaxonomy.cdm.model.common.TimePeriod
 
setState(State) - Method in class eu.etaxonomy.cdm.model.description.StateData
 
setStatisticalValues(Set<StatisticalMeasurementValue>) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
setStatus(PresenceAbsenceTermBase) - Method in class eu.etaxonomy.cdm.model.description.Distribution
 
setStatus(Set<NomenclaturalStatus>) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setStoredAt(Collection) - Method in class eu.etaxonomy.cdm.model.molecular.DnaSample
 
setStoredUnder(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase
 
setStreet(String) - Method in class eu.etaxonomy.cdm.model.agent.Address
 
setStringData(String) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setSubGenusAuthorship(String) - Method in class eu.etaxonomy.cdm.model.name.BacterialName
 
setSuffix(String) - Method in class eu.etaxonomy.cdm.model.agent.Person
 
setSuffix(String) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentation
 
setSuperCollection(Collection) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setSuperViews(Set<View>) - Method in class eu.etaxonomy.cdm.model.view.View
 
setSupportedCategoricalEnumerations(Set<TermVocabulary>) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsCommonTaxonName(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsDistribution(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsIndividualAssociation(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsQuantitativeData(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsTaxonInteraction(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSupportsTextData(boolean) - Method in class eu.etaxonomy.cdm.model.description.Feature
 
setSymmetric(boolean) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
setSynonym(Synonym) - Method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Sets the given synonym to this synonym relationship.
setSynonymRelations(Set<SynonymRelationship>) - Method in class eu.etaxonomy.cdm.model.taxon.Synonym
 
setSynonymRelations(Set<SynonymRelationship>) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
 
setSynonyms(List<Synonym>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the synonyms property.
setSystemId(String) - Method in class eu.etaxonomy.cdm.jaxb.LsInputImpl
 
setTaxa(List<Taxon>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the taxa property.
setTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.description.TaxonDescription
Deprecated. 
setTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.occurrence.DeterminationEvent
 
setTaxon2(Taxon) - Method in class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
setTaxonBases(Set<TaxonBase>) - Method in class eu.etaxonomy.cdm.model.name.TaxonNameBase
 
setTaxonName(TaxonNameBase) - Method in class eu.etaxonomy.cdm.model.description.TaxonNameDescription
Deprecated. 
setTaxonomicNames(List<TaxonNameBase>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the taxonomicNames property.
setTaxonomicParent(Taxon, ReferenceBase, String) - Method in class eu.etaxonomy.cdm.model.taxon.Taxon
Replaces both the taxonomic parent cache with the given new parent taxon and the corresponding taxon relationship with a new taxon relationship (with taxon relationship type "taxonomically included in") instance.
setTeamMembers(List<Person>) - Method in class eu.etaxonomy.cdm.model.agent.Team
 
setTerms(List<? extends TermBase>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the terms property.
setTerms(Set<T>) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
setTermSourceUri(String) - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
setTermVocabularies(List<TermVocabulary>) - Method in class eu.etaxonomy.cdm.jaxb.DataSet
Sets the value of the term vocabularies property.
setText(String) - Method in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
setTimeperiod(TimePeriod) - Method in class eu.etaxonomy.cdm.model.common.EventBase
 
setTimeperiod(TimePeriod) - Method in interface eu.etaxonomy.cdm.model.common.IEvent
 
setTitle(MultilanguageSet) - Method in class eu.etaxonomy.cdm.model.media.Media
 
setTitle(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setTitle(String) - Method in class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
 
setTitleCache(String) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setTitleCache(String, boolean) - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
setTitleCache(String) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
setTitleCache(String, boolean) - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
 
setToTaxon(Taxon) - Method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Sets the given taxon as a target in this taxon relationship.
setTownOrLocation(String) - Method in class eu.etaxonomy.cdm.model.occurrence.Collection
 
setTransitive(boolean) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
setTrinomHybrid(boolean) - Method in class eu.etaxonomy.cdm.model.name.BotanicalName
 
setType(ExtensionType) - Method in class eu.etaxonomy.cdm.model.common.Extension
 
setType(TYPE) - Method in class eu.etaxonomy.cdm.model.common.RelationshipBase
 
setType(Feature) - Method in class eu.etaxonomy.cdm.model.description.DescriptionElementBase
Same as setFeature(Feature feature)
setType(Feature) - Method in class eu.etaxonomy.cdm.model.description.FeatureNode
 
setType(StatisticalMeasure) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
setType(NamedAreaType) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setType(RightsTerm) - Method in class eu.etaxonomy.cdm.model.media.Rights
 
setType(NomenclaturalStatusType) - Method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatus
 
setType(DerivationEventType) - Method in class eu.etaxonomy.cdm.model.occurrence.DerivationEvent
 
setType(BibtexEntryType) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setTypes(Set<InstitutionType>) - Method in class eu.etaxonomy.cdm.model.agent.Institution
 
setTypeSpecimen(DerivedUnitBase) - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
 
setTypeStatus(TypeDesignationStatus) - Method in class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
 
setTypifiedNames(Set<TaxonNameBase>) - Method in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
 
setUnit(MeasurementUnit) - Method in class eu.etaxonomy.cdm.model.description.QuantitativeData
 
setUpdated(Calendar) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
setUpdatedBy(Person) - Method in class eu.etaxonomy.cdm.model.common.VersionableEntity
 
setUri(String) - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
setUri(String) - Method in class eu.etaxonomy.cdm.model.media.MediaRepresentationPart
 
setUri(String) - Method in class eu.etaxonomy.cdm.model.media.Rights
 
setUri(String) - Method in class eu.etaxonomy.cdm.model.molecular.GenBankAccession
 
setUri(String) - Method in class eu.etaxonomy.cdm.model.reference.ReferenceBase
 
setUrl(String) - Method in class eu.etaxonomy.cdm.model.agent.Contact
 
setUsedSequences(Set<Sequence>) - Method in class eu.etaxonomy.cdm.model.molecular.PhylogeneticTree
 
setUuid(UUID) - Method in class eu.etaxonomy.cdm.model.common.CdmBase
 
setUuid(UUID) - Method in interface eu.etaxonomy.cdm.model.common.ICdmBase
 
setValidPeriod(TimePeriod) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setValidPeriod(TimePeriod) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
setValue(String) - Method in class eu.etaxonomy.cdm.model.common.Extension
 
setValue(float) - Method in class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
 
setVocabulary(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setVocabulary(TermVocabulary) - Method in interface eu.etaxonomy.cdm.model.common.ILoadableTerm
 
setVocabulary(TermVocabulary) - Method in class eu.etaxonomy.cdm.model.common.OrderedTermBase
 
setVocabularyStore(IVocabularyStore) - Static method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
setVocabularyStore(IVocabularyStore) - Method in class eu.etaxonomy.cdm.model.common.init.TermLoader
 
setVolume(String) - Method in class eu.etaxonomy.cdm.model.reference.Article
 
setVolume(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
setVolume(String) - Method in class eu.etaxonomy.cdm.model.reference.Generic
 
setVolume(String) - Method in class eu.etaxonomy.cdm.model.reference.PrintedUnitBase
 
setWaterbodiesOrCountries(Set<WaterbodyOrCountry>) - Method in class eu.etaxonomy.cdm.model.location.NamedArea
 
setWidth(int) - Method in class eu.etaxonomy.cdm.model.media.ImageFile
 
setYear(String) - Method in class eu.etaxonomy.cdm.model.reference.BibtexReference
 
Sex - Class in eu.etaxonomy.cdm.model.description
 
Sex() - Constructor for class eu.etaxonomy.cdm.model.description.Sex
Constructor
Sex(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Sex
 
size() - Method in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
SOUTH_AMERICA() - Static method in class eu.etaxonomy.cdm.model.location.Continent
 
SPANISH() - Static method in class eu.etaxonomy.cdm.model.common.Language
 
SPECIALFORM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SPECIES() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SPECIESAGGREGATE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Specimen - Class in eu.etaxonomy.cdm.model.occurrence
A specimen is regarded as derived from an field observation, so locality and gathering related information is captured as a separate FieldObservation object related to a specimen via a derivation event
Specimen() - Constructor for class eu.etaxonomy.cdm.model.occurrence.Specimen
Constructor
SpecimenDescription - Class in eu.etaxonomy.cdm.model.description
 
SpecimenDescription() - Constructor for class eu.etaxonomy.cdm.model.description.SpecimenDescription
Constructor
SpecimenOrObservationBase - Class in eu.etaxonomy.cdm.model.occurrence
type figures are observations with at least a figure object in media
SpecimenOrObservationBase() - Constructor for class eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase
Constructor
SpecimenTypeDesignation - Class in eu.etaxonomy.cdm.model.name
The class representing a typification of one or several taxon names by a specimen or a figure.
SpecimenTypeDesignation() - Constructor for class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Class constructor: creates a new empty specimen type designation.
SpecimenTypeDesignation(DerivedUnitBase, TypeDesignationStatus, ReferenceBase, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation
Class constructor: creates a new specimen type designation instance (including its reference source and eventually the taxon name string originally used by this reference when establishing the former designation).
sqlTypes() - Method in class eu.etaxonomy.cdm.model.common.UUIDUserType
 
Stage - Class in eu.etaxonomy.cdm.model.description
 
Stage() - Constructor for class eu.etaxonomy.cdm.model.description.Stage
Constructor
Stage(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.Stage
 
State - Class in eu.etaxonomy.cdm.model.description
 
State() - Constructor for class eu.etaxonomy.cdm.model.description.State
 
State(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.State
 
STATE() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
StateData - Class in eu.etaxonomy.cdm.model.description
 
StateData() - Constructor for class eu.etaxonomy.cdm.model.description.StateData
 
StatisticalMeasure - Class in eu.etaxonomy.cdm.model.description
 
StatisticalMeasure() - Constructor for class eu.etaxonomy.cdm.model.description.StatisticalMeasure
Constructor
StatisticalMeasure(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
StatisticalMeasurementValue - Class in eu.etaxonomy.cdm.model.description
 
StatisticalMeasurementValue() - Constructor for class eu.etaxonomy.cdm.model.description.StatisticalMeasurementValue
Constructor
StrategyBase<T extends StrategyBase> - Class in eu.etaxonomy.cdm.strategy
 
StrategyBase() - Constructor for class eu.etaxonomy.cdm.strategy.StrategyBase
 
StrictReferenceBase - Class in eu.etaxonomy.cdm.model.reference
This (abstract) class represents all different kind of references regardless of their peculiarities.
StrictReferenceBase() - Constructor for class eu.etaxonomy.cdm.model.reference.StrictReferenceBase
 
StrictReferenceBaseDefaultCacheStrategy<T extends StrictReferenceBase> - Class in eu.etaxonomy.cdm.strategy.cache.reference
 
StringNotParsableException - Exception in eu.etaxonomy.cdm.strategy.exceptions
 
StringNotParsableException() - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.StringNotParsableException
 
StringNotParsableException(String) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.StringNotParsableException
 
StringNotParsableException(Throwable) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.StringNotParsableException
 
StringNotParsableException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.StringNotParsableException
 
SUBCLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBDIVISION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBFAMILY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBFORM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBGENUS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBKINGDOM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBNUDUM() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "subnudum".
SUBORDER() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBPHYLUM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSECTION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSERIES() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSPECIES() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSPECIFICAGGREGATE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSUBFORM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBSUBVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBTRIBE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUBVARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERCLASS() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERDIVISION() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERFAMILY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERFLUOUS() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "superfluous".
SUPERKINGDOM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERORDER() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERPHYLUM() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPERTRIBE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
SUPRAGENERICTAXON() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
Synonym - Class in eu.etaxonomy.cdm.model.taxon
The class for synonyms: these are taxa the taxon names of which are not used by the reference to designate a real taxon but are mentioned as taxon names that were oder are used by some other unspecified references to designate (at least to some extent) the same particular real taxon.
Synonym() - Constructor for class eu.etaxonomy.cdm.model.taxon.Synonym
Class constructor: creates a new empty synonym instance.
Synonym(TaxonNameBase, ReferenceBase) - Constructor for class eu.etaxonomy.cdm.model.taxon.Synonym
Class constructor: creates a new synonym instance with the taxon name used and the reference using it as a synonym and not as an ("accepted/correct") taxon.
SYNONYM_OF() - Static method in class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Returns the synonym relationship type "is synonym of".
SynonymRelationship - Class in eu.etaxonomy.cdm.model.taxon
The class representing the assignation of a synonym to an ("accepted/correct") taxon.
SynonymRelationship(Synonym, Taxon, SynonymRelationshipType, ReferenceBase, String) - Constructor for class eu.etaxonomy.cdm.model.taxon.SynonymRelationship
Class constructor: creates a new synonym relationship instance (with the given synonym, the given "accepted/correct" taxon, the given synonym relationship type and with the reference source on which the relationship assertion is based).
SynonymRelationshipType - Class in eu.etaxonomy.cdm.model.taxon
The class representing categories of synonym relationships (like "heterotypic synonym of").
SynonymRelationshipType() - Constructor for class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Class constructor: creates a new empty synonym relationship type instance.
SynonymRelationshipType(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType
Class constructor: creates an additional synonym relationship type instance with a description (in the default language), a label and a label abbreviation.
synonyms - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
SYNTYPE() - Static method in class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Returns the "syntype" designation status.

T

taxa - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
Taxon - Class in eu.etaxonomy.cdm.model.taxon
The class for "accepted/correct" taxa (only these taxa according to the opinion of the reference can build a taxonomic tree).
Taxon() - Constructor for class eu.etaxonomy.cdm.model.taxon.Taxon
Deprecated. 
Taxon(TaxonNameBase, ReferenceBase) - Constructor for class eu.etaxonomy.cdm.model.taxon.Taxon
Class constructor: creates a new (accepted/correct) taxon instance with the taxon name used and the reference using it.
TaxonBase - Class in eu.etaxonomy.cdm.model.taxon
The upmost (abstract) class for the use of a taxon name in a reference or within a taxonomic view/treatment either as a taxon ("accepted" respectively "correct" name) or as a (junior) synonym.
TaxonBase() - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonBase
Class constructor: creates a new empty (abstract) taxon.
TaxonBase(TaxonNameBase, ReferenceBase) - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonBase
Class constructor: creates a new (abstract) taxon with the taxon name used and the reference using it.
TaxonComparator - Class in eu.etaxonomy.cdm.model.taxon
This class makes available a method to compare two taxa by comparing the publication dates of the corresponding taxon names.
TaxonComparator() - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonComparator
 
TaxonDescription - Class in eu.etaxonomy.cdm.model.description
A description that delimits this taxon.
TaxonDescription() - Constructor for class eu.etaxonomy.cdm.model.description.TaxonDescription
 
TaxonGenerator - Class in eu.etaxonomy.cdm.datagenerator
 
TaxonGenerator() - Constructor for class eu.etaxonomy.cdm.datagenerator.TaxonGenerator
 
TaxonInteraction - Class in eu.etaxonomy.cdm.model.description
FIXME
TaxonInteraction() - Constructor for class eu.etaxonomy.cdm.model.description.TaxonInteraction
 
TaxonNameBase<T extends TaxonNameBase,S extends INameCacheStrategy> - Class in eu.etaxonomy.cdm.model.name
The upmost (abstract) class for scientific taxon names regardless of any particular nomenclature code.
TaxonNameBase() - Constructor for class eu.etaxonomy.cdm.model.name.TaxonNameBase
Class constructor: creates a new empty taxon name.
TaxonNameBase(Rank) - Constructor for class eu.etaxonomy.cdm.model.name.TaxonNameBase
Class constructor: creates a new taxon name only containing its rank.
TaxonNameBase(HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.TaxonNameBase
Class constructor: creates a new taxon name only containing its homotypical group.
TaxonNameBase(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.TaxonNameBase
Class constructor: creates a new taxon name only containing its rank and its homotypical group.
TaxonNameDescription - Class in eu.etaxonomy.cdm.model.description
This class represents all piece of information (not ruled by a nomenclatural code) concerning a taxon name like for instance the content of its first publication (protolog) or a picture of this publication.
TaxonNameDescription() - Constructor for class eu.etaxonomy.cdm.model.description.TaxonNameDescription
Constructor
TAXONOMICALLY_INCLUDED_IN() - Static method in class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Returns the taxon relationship type "is taxonomically included in".
taxonomicNames - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
TaxonRelationship - Class in eu.etaxonomy.cdm.model.taxon
The class representing a relationship between two ("accepted/correct") taxa.
TaxonRelationship(Taxon, Taxon, TaxonRelationshipType, ReferenceBase, String) - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonRelationship
Class constructor: creates a new taxon relationship instance (with the given "accepted/correct" taxa, the given synonym relationship type and with the reference source on which the relationship assertion is based).
TaxonRelationshipType - Class in eu.etaxonomy.cdm.model.taxon
The class representing categories of taxon relationships (like "is congruent to" or "is misapplied name for").
TaxonRelationshipType() - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Class constructor: creates a new empty taxon relationship type instance.
TaxonRelationshipType(String, String, String, boolean, boolean) - Constructor for class eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType
Class constructor: creates an additional taxon relationship type instance with a description (in the default language), a label, a label abbreviation and the flags indicating whether this new taxon relationship type is symmetric and/or transitive.
TDWG_LEVEL1() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
continents
TDWG_LEVEL2() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
larger regions
TDWG_LEVEL3() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
mostly countries
TDWG_LEVEL4() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
TdwgArea - Class in eu.etaxonomy.cdm.model.location
 
TdwgArea() - Constructor for class eu.etaxonomy.cdm.model.location.TdwgArea
 
Team - Class in eu.etaxonomy.cdm.model.agent
This class represents teams of persons.
Team() - Constructor for class eu.etaxonomy.cdm.model.agent.Team
Class constructor (including the cache strategy defined in TeamDefaultCacheStrategy).
TeamDefaultCacheStrategy - Class in eu.etaxonomy.cdm.strategy.cache.agent
 
TeamOrPersonBase<T extends TeamOrPersonBase> - Class in eu.etaxonomy.cdm.model.agent
The abstract class for such agents (persons or teams) who might also be used for authorship of references or of taxon names.
TeamOrPersonBase() - Constructor for class eu.etaxonomy.cdm.model.agent.TeamOrPersonBase
 
TECHREPORT() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "techreport": a report published by a school or other institution, usually numbered within a series.
TermBase - Class in eu.etaxonomy.cdm.model.common
 
TermBase() - Constructor for class eu.etaxonomy.cdm.model.common.TermBase
 
TermBase(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.TermBase
 
termClass - Variable in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
TermLanguageComparator<T extends TermBase> - Class in eu.etaxonomy.cdm.model.common
 
TermLanguageComparator() - Constructor for class eu.etaxonomy.cdm.model.common.TermLanguageComparator
 
TermLoader - Class in eu.etaxonomy.cdm.model.common.init
 
TermLoader() - Constructor for class eu.etaxonomy.cdm.model.common.init.TermLoader
Deprecated. 
TermLoader(IVocabularyStore) - Constructor for class eu.etaxonomy.cdm.model.common.init.TermLoader
 
TermNotFoundException - Exception in eu.etaxonomy.cdm.model.common.init
 
TermNotFoundException() - Constructor for exception eu.etaxonomy.cdm.model.common.init.TermNotFoundException
 
TermNotFoundException(String) - Constructor for exception eu.etaxonomy.cdm.model.common.init.TermNotFoundException
 
TermNotFoundException(Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.init.TermNotFoundException
 
TermNotFoundException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.init.TermNotFoundException
 
terms - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
terms - Variable in class eu.etaxonomy.cdm.model.common.TermVocabulary
 
termVocabularies - Variable in class eu.etaxonomy.cdm.jaxb.DataSet
 
TermVocabulary<T extends DefinedTermBase> - Class in eu.etaxonomy.cdm.model.common
A single enumeration must only contain DefinedTerm instances of one kind (this means a subclass of DefinedTerm).
TermVocabulary() - Constructor for class eu.etaxonomy.cdm.model.common.TermVocabulary
 
TermVocabulary(String, String, String, String) - Constructor for class eu.etaxonomy.cdm.model.common.TermVocabulary
 
termVocabularyMap - Static variable in class eu.etaxonomy.cdm.model.common.init.DefaultVocabularyStore
 
text - Variable in class eu.etaxonomy.cdm.model.common.LanguageStringBase
 
TextData - Class in eu.etaxonomy.cdm.model.description
 
TextData() - Constructor for class eu.etaxonomy.cdm.model.description.TextData
Constructor
TextData(Feature) - Constructor for class eu.etaxonomy.cdm.model.description.TextData
 
TextFormat - Class in eu.etaxonomy.cdm.model.description
kind of format used for structuring text.
TextFormat() - Constructor for class eu.etaxonomy.cdm.model.description.TextFormat
 
TextFormat(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.description.TextFormat
 
Thesis - Class in eu.etaxonomy.cdm.model.reference
This class represents thesis.
Thesis() - Constructor for class eu.etaxonomy.cdm.model.reference.Thesis
 
TimePeriod - Class in eu.etaxonomy.cdm.model.common
 
TimePeriod() - Constructor for class eu.etaxonomy.cdm.model.common.TimePeriod
Constructor
TimePeriod(Calendar) - Constructor for class eu.etaxonomy.cdm.model.common.TimePeriod
 
TimePeriod(Calendar, Calendar) - Constructor for class eu.etaxonomy.cdm.model.common.TimePeriod
 
TISSUE_SAMPLING() - Static method in class eu.etaxonomy.cdm.model.occurrence.DerivationEventType
 
TO_BE_CHECKED() - Static method in class eu.etaxonomy.cdm.model.common.MarkerType
 
toString() - Method in class eu.etaxonomy.cdm.model.common.CdmBase
Overrides Object.toString().
toString() - Method in class eu.etaxonomy.cdm.model.common.IdentifiableEntity
 
toString() - Method in interface eu.etaxonomy.cdm.model.common.IIdentifiableEntitiy
Overrides CdmBase.toString().
toString() - Method in class eu.etaxonomy.cdm.model.common.Language
 
toString() - Method in class eu.etaxonomy.cdm.model.common.LanguageString
 
toString() - Method in class eu.etaxonomy.cdm.model.common.Representation
 
toString() - Method in class eu.etaxonomy.cdm.model.common.TermBase
 
TOWN() - Static method in class eu.etaxonomy.cdm.model.location.NamedAreaLevel
 
TREATED_AS_LATER_HOMONYM() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "treated as later homonym" name relationship type.
TRIBE() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
TypeDesignationBase - Class in eu.etaxonomy.cdm.model.name
The (abstract) class representing a typification of one or several taxon names.
TypeDesignationBase() - Constructor for class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Class constructor: creates a new empty type designation.
TypeDesignationBase(ReferenceBase, String, String, boolean) - Constructor for class eu.etaxonomy.cdm.model.name.TypeDesignationBase
Class constructor: creates a new type designation (including its reference source and eventually the taxon name string originally used by this reference when establishing the former designation).
TypeDesignationStatus - Class in eu.etaxonomy.cdm.model.name
The class representing status (categories) of specimen type designations for a taxon name or a set of them.
TypeDesignationStatus() - Constructor for class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Class constructor: creates a new empty type designation status instance.
TypeDesignationStatus(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.name.TypeDesignationStatus
Class constructor: creates an additional type designation status instance with a description (in the default language), a label and a label abbreviation.
TYPICAL_LOWER_BOUNDARY() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
TYPICAL_UPPER_BOUNDARY() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
typifiedNames - Variable in class eu.etaxonomy.cdm.model.name.HomotypicalGroup
 

U

UNKNOWN() - Static method in class eu.etaxonomy.cdm.model.description.Feature
 
UnknownCdmTypeException - Exception in eu.etaxonomy.cdm.strategy.exceptions
 
UnknownCdmTypeException() - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException
 
UnknownCdmTypeException(String) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException
 
UnknownCdmTypeException(Throwable) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException
 
UnknownCdmTypeException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException
 
unmarshal(DataSet, File) - Method in class eu.etaxonomy.cdm.jaxb.CdmDocumentBuilder
 
unmarshal(String) - Method in class eu.etaxonomy.cdm.jaxb.DateTimeAdapter
 
unmarshal(String) - Method in class eu.etaxonomy.cdm.jaxb.UUIDAdapter
 
UNPUBLISHED() - Static method in class eu.etaxonomy.cdm.model.reference.BibtexEntryType
Returns the BibTeX entry "unpublished": a document having an author and title, but not formally published.
UTIQUE_REJECTED() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "utique rejected".
UTIQUE_REJECTED_PROP() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "proposed to be utique rejected".
UUID_URN_PREFIX - Static variable in class eu.etaxonomy.cdm.jaxb.UUIDAdapter
 
UUIDAdapter - Class in eu.etaxonomy.cdm.jaxb
 
UUIDAdapter() - Constructor for class eu.etaxonomy.cdm.jaxb.UUIDAdapter
 
uuidEnglish - Static variable in class eu.etaxonomy.cdm.model.common.Language
 
UUIDUserType - Class in eu.etaxonomy.cdm.model.common
 
UUIDUserType() - Constructor for class eu.etaxonomy.cdm.model.common.UUIDUserType
 

V

VALID() - Static method in class eu.etaxonomy.cdm.model.name.NomenclaturalStatusType
Returns the nomenclatural status type "valid" (this corresponds to "available" for zoological names).
VALIDATED_BY_NAME() - Static method in class eu.etaxonomy.cdm.model.name.NameRelationshipType
Returns the "validated by name" name relationship type.
VARIANCE() - Static method in class eu.etaxonomy.cdm.model.description.StatisticalMeasure
 
VARIETY() - Static method in class eu.etaxonomy.cdm.model.name.Rank
 
VersionableEntity<T extends VersionableEntity> - Class in eu.etaxonomy.cdm.model.common
The class keeps track of versions via a full linked list to different version objects, or a simple updated/updatedBy property in the same object.
VersionableEntity() - Constructor for class eu.etaxonomy.cdm.model.common.VersionableEntity
 
View - Class in eu.etaxonomy.cdm.model.view
use ARCHIVE view/dataset to maintain an archive.
View() - Constructor for class eu.etaxonomy.cdm.model.view.View
 
ViralName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for viral taxa.
ViralName(Rank) - Constructor for class eu.etaxonomy.cdm.model.name.ViralName
Class constructor: creates a new viral taxon name instance only containing its rank.
vocabulary - Variable in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
vocabularyStore - Static variable in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 

W

WaterbodyOrCountry - Class in eu.etaxonomy.cdm.model.location
+/- current ISO codes. year given with each entry http://userpage.chemie.fu-berlin.de/diverse/doc/ISO_3166.html http://www.davros.org/misc/iso3166.txt
WaterbodyOrCountry() - Constructor for class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
WaterbodyOrCountry(String, String, String) - Constructor for class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
WebPage - Class in eu.etaxonomy.cdm.model.reference
This class represents electronic publications available on the world wide web.
WebPage() - Constructor for class eu.etaxonomy.cdm.model.reference.WebPage
Class constructor: creates a new empty web page instance.
WGS84() - Static method in class eu.etaxonomy.cdm.model.location.ReferenceSystem
 
writeCsvLine(CSVWriter) - Method in class eu.etaxonomy.cdm.model.common.DefinedTermBase
 
writeCsvLine(CSVWriter) - Method in interface eu.etaxonomy.cdm.model.common.ILoadableTerm
 
writeCsvLine(CSVWriter) - Method in class eu.etaxonomy.cdm.model.common.Language
 
writeCsvLine(CSVWriter) - Method in class eu.etaxonomy.cdm.model.common.RelationshipTermBase
 
writeCsvLine(CSVWriter) - Method in class eu.etaxonomy.cdm.model.location.WaterbodyOrCountry
 
writeSchema() - Method in class eu.etaxonomy.cdm.jaxb.CdmSchemaGenerator
Writes one schema file per namespace.
WrongTermTypeException - Exception in eu.etaxonomy.cdm.model.common
 
WrongTermTypeException() - Constructor for exception eu.etaxonomy.cdm.model.common.WrongTermTypeException
 
WrongTermTypeException(String) - Constructor for exception eu.etaxonomy.cdm.model.common.WrongTermTypeException
 
WrongTermTypeException(Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.WrongTermTypeException
 
WrongTermTypeException(String, Throwable) - Constructor for exception eu.etaxonomy.cdm.model.common.WrongTermTypeException
 

X

XML_FRAGMENT() - Static method in class eu.etaxonomy.cdm.model.common.ExtensionType
 

Z

ZoologicalName - Class in eu.etaxonomy.cdm.model.name
The taxon name class for animals.
ZoologicalName() - Constructor for class eu.etaxonomy.cdm.model.name.ZoologicalName
Class constructor: creates a new zoological taxon name instance only containing the default cache strategy.
ZoologicalName(Rank, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.ZoologicalName
Class constructor: creates a new zoological taxon name instance only containing its rank, its homotypical group and the default cache strategy.
ZoologicalName(Rank, String, String, String, String, TeamOrPersonBase, INomenclaturalReference, String, HomotypicalGroup) - Constructor for class eu.etaxonomy.cdm.model.name.ZoologicalName
Class constructor: creates a new zoological taxon name instance containing its rank, its homotypical group, its scientific name components, its author(team), its nomenclatural reference and the default cache strategy.
ZooNameDefaultCacheStrategy<T extends ZoologicalName> - Class in eu.etaxonomy.cdm.strategy.cache.name
 
zooOrBotanicAuthor(String, TeamOrPersonBase[], Integer[]) - Method in class eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl
Parses the authorString and if it matches an botanical or zoological authorTeam it fills the computes the AuthorTeam and fills it into the first field of the team array.

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