Patric Plitzner [Wed, 5 Mar 2014 12:16:11 +0000 (12:16 +0000)]
- added transparency to icons
Patric Plitzner [Wed, 5 Mar 2014 07:43:08 +0000 (07:43 +0000)]
- added util method to get for getting a CDM entity (used in authenication/permission framework)
- made use of this method where the type of the parameter was too general (like object)
- made getBaseUnit() of DerivedUnitFacade public
Patric Plitzner [Tue, 4 Mar 2014 16:18:28 +0000 (16:18 +0000)]
- added icons for Amplification, Sequence and SingleRead
Patric Plitzner [Tue, 4 Mar 2014 08:25:39 +0000 (08:25 +0000)]
- added code to show icon for Amplification, Sequence and SingleRead (image files still missing)
- removed text fields for media file in dna DetailsViews
- added contig file in Sequence DetailsView
Patric Plitzner [Mon, 3 Mar 2014 08:48:20 +0000 (08:48 +0000)]
- added cascading save to pherogram (Media) of SingleRead
- added media section to DetailsViews for Amplification (gel photo) and SingelRead (pherogram)
Andreas Kohlbecker [Fri, 28 Feb 2014 11:17:31 +0000 (11:17 +0000)]
fixing missing text of Group members (User) in details section
Katja Luther [Thu, 27 Feb 2014 08:42:33 +0000 (08:42 +0000)]
fix problem with changeSynonymToAcceptedTaxon of a synonym being part of an homotypical group
Andreas Kohlbecker [Wed, 26 Feb 2014 16:25:40 +0000 (16:25 +0000)]
protecting editing capabilities of names references and authors - #4055 (action enablement adapts to the users granted authorities)
Patric Plitzner [Wed, 26 Feb 2014 14:42:42 +0000 (14:42 +0000)]
- added multi-select(multi-save) to SpecimenImportEditor
Andreas Kohlbecker [Wed, 26 Feb 2014 14:36:46 +0000 (14:36 +0000)]
fix: adding missing case statements
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:39 +0000 (11:02 +0000)]
disabling edit button if user is allowed to UPDATE & making text elements selectable
Andreas Kohlbecker [Wed, 26 Feb 2014 11:02:33 +0000 (11:02 +0000)]
implementing the CommandHandlerButton and using it as button to open the OpenFeatureTreeEditorWizard - #4055 (action enablement adapts to the users granted authorities)
Patric Plitzner [Wed, 26 Feb 2014 08:39:05 +0000 (08:39 +0000)]
- moved transient interfaces to taxeditor.editor
- changed GUI control of DataImportEditor to be a TableViewer
- made DataImportEditor generic
Andreas Müller [Tue, 25 Feb 2014 21:36:43 +0000 (21:36 +0000)]
minor
Cherian Mathew [Tue, 25 Feb 2014 08:03:44 +0000 (08:03 +0000)]
disabling remoting calls untill further investigation
Andreas Müller [Mon, 24 Feb 2014 14:48:22 +0000 (14:48 +0000)]
minor
Patric Plitzner [Mon, 24 Feb 2014 07:51:18 +0000 (07:51 +0000)]
- added missing imports
Patric Plitzner [Mon, 24 Feb 2014 07:47:38 +0000 (07:47 +0000)]
- start conversation before ABCD conversion
- pass conversation to editor
Andreas Kohlbecker [Fri, 21 Feb 2014 18:16:25 +0000 (18:16 +0000)]
adding warning dialog on unavailabel DefinedTermEditor
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:48 +0000 (18:15 +0000)]
removing unused parameter definition
Andreas Kohlbecker [Fri, 21 Feb 2014 18:15:44 +0000 (18:15 +0000)]
fixing broken parameter for eu.etaxonomy.taxeditor.store.openDefinedTermEditor command
Cherian Mathew [Thu, 20 Feb 2014 16:37:36 +0000 (16:37 +0000)]
RemoteLazyLoadingTest : Creating application configuration programmatically
AbstractPersistentCollection, AbstractLazyInitializer : Copied aspect code here
CdmApplicationRemoteConfiguration : overriding datasource since it is not required in remoting
remotingApplicationContext : added autowiring config
Katja Luther [Thu, 20 Feb 2014 09:11:21 +0000 (09:11 +0000)]
additional delete functionality to bulkeditor
Andreas Kohlbecker [Wed, 19 Feb 2014 15:23:33 +0000 (15:23 +0000)]
minor fixing
Patric Plitzner [Wed, 19 Feb 2014 14:56:58 +0000 (14:56 +0000)]
- implemented "Save Specimen" command
- added @Override annotations
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:32 +0000 (14:52 +0000)]
RolesSourceProvider to enable activities by cdm roles and protecting bulkeditors and term editors - #4055 (action enablement adapts to the users granted authorities)
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:23 +0000 (14:52 +0000)]
base implementation and configuration for securing the editor - #4055 (action enablement adapts to the users granted authorities)
Andreas Kohlbecker [Wed, 19 Feb 2014 14:52:09 +0000 (14:52 +0000)]
.gitignore
Patric Plitzner [Wed, 19 Feb 2014 14:34:27 +0000 (14:34 +0000)]
- added "Save Specimen" command to DataImportEditor
Patric Plitzner [Wed, 19 Feb 2014 14:32:22 +0000 (14:32 +0000)]
- changed type of BioCaseQuery results from List to Set to filter out duplicates
- as saveOrUpdate() for the transient services just adds the derived units to the lists this was necessary
Patric Plitzner [Tue, 18 Feb 2014 15:00:09 +0000 (15:00 +0000)]
- BioCase querying as a separate thread
Cherian Mathew [Tue, 18 Feb 2014 12:33:28 +0000 (12:33 +0000)]
updaed build properties to include source / resource files when packaging with maven
Cherian Mathew [Tue, 18 Feb 2014 11:03:15 +0000 (11:03 +0000)]
reverting back config file to make local invocation work
Patric Plitzner [Tue, 18 Feb 2014 07:42:22 +0000 (07:42 +0000)]
- updated SpecimenImportWizard
- refactored BioCase querying to be a separate job
Patric Plitzner [Tue, 18 Feb 2014 07:40:33 +0000 (07:40 +0000)]
- added preference which shows determination section only for FieldUnits in the DetailsView
Patric Plitzner [Mon, 17 Feb 2014 14:48:20 +0000 (14:48 +0000)]
- added preference which shows determination section only for FieldUnits in the DetailsView
- added missing parameters for SingleRead DetailsView
Andreas Müller [Fri, 14 Feb 2014 17:19:20 +0000 (17:19 +0000)]
fix for invisible description.setTaxon method in Editor
Cherian Mathew [Fri, 14 Feb 2014 16:53:58 +0000 (16:53 +0000)]
CdmApplicationRemoteConfiguration : added GeoService and @Component bean name
remotingApplicationContext : exclude CdmApplicationDefaultConfiguration from comp scan
remoting_services_security : cosmetic
httpInvokerServiceClients : added editGeoService
config.properties : corrected context path
localApplicationContext.xml : new config file to ease remoting switch
editorApplicationContext : simplified switch to remoting and back
Patric Plitzner [Thu, 13 Feb 2014 12:16:14 +0000 (12:16 +0000)]
- added missing parameters for SingleRead DetailsView
Patric Plitzner [Thu, 13 Feb 2014 12:15:42 +0000 (12:15 +0000)]
- added option to set text limit for TextWithLabelElement
Cherian Mathew [Thu, 13 Feb 2014 12:08:30 +0000 (12:08 +0000)]
reverting cdm application / controller refactoring and simply extending the CdmApplicationRemoteConfiguration class
by throwing UnsupportedOperationException for methods that are not supported by remoting
Cherian Mathew [Wed, 12 Feb 2014 16:59:16 +0000 (16:59 +0000)]
correcting import
Cherian Mathew [Wed, 12 Feb 2014 16:58:37 +0000 (16:58 +0000)]
removing aspetcj capability and reverting to default
Cherian Mathew [Wed, 12 Feb 2014 16:54:11 +0000 (16:54 +0000)]
changed package name to be consistent with cdmlib
remotingApplicationContext.xml : cleaning up component scan
Cherian Mathew [Wed, 12 Feb 2014 14:25:59 +0000 (14:25 +0000)]
removing Transient annotation - not required
Cherian Mathew [Wed, 12 Feb 2014 14:19:52 +0000 (14:19 +0000)]
refactoring ICdmApplicationDefaultConfiguration
Cherian Mathew [Wed, 12 Feb 2014 13:02:25 +0000 (13:02 +0000)]
refactoring CdmApplicationConfiguration/Controller to allow for remoting
CdmStoreConnector : added application configuration call for remoting (currently commented)
Cherian Mathew [Wed, 12 Feb 2014 12:52:34 +0000 (12:52 +0000)]
config.properties : config for target cdmserver in remoting
editorApplicationContext.xml : added (currently commented) config for remoting
Cherian Mathew [Wed, 12 Feb 2014 12:48:35 +0000 (12:48 +0000)]
erging from remoting-1.0 branch
- adding new confugration / controller classes for remoting
- adding aspect and related aop.xml config file
- added aspect and spring remoting jars
- updated manifest , pom and classpath for the new dependencies
Katja Luther [Wed, 12 Feb 2014 12:27:53 +0000 (12:27 +0000)]
move ChangeConceptToSynonym business logic from editor operation to service layer
Patric Plitzner [Wed, 12 Feb 2014 12:13:23 +0000 (12:13 +0000)]
- added "Search"-Button to DerivateSearchView
Patric Plitzner [Wed, 12 Feb 2014 11:40:57 +0000 (11:40 +0000)]
- enabled DerivateType filter in DerivateSearchView
Cherian Mathew [Wed, 12 Feb 2014 11:04:35 +0000 (11:04 +0000)]
remotingApplicationContext : removed load time weaving config
AbstractPersistentCollection : reverting to original code
CdmApplicationRemoteController : adding missing method call
Katja Luther [Wed, 12 Feb 2014 10:39:54 +0000 (10:39 +0000)]
delete User in bulkeditor
Katja Luther [Wed, 12 Feb 2014 10:15:56 +0000 (10:15 +0000)]
delete of group in bulkeditor #4054
Cherian Mathew [Wed, 12 Feb 2014 09:10:08 +0000 (09:10 +0000)]
merge from trunk
Cherian Mathew [Wed, 12 Feb 2014 09:09:16 +0000 (09:09 +0000)]
RemoteLazyLoadingTest : cosmetic changes
CdmApplicationRemoteController, CdmApplicationRemoteConfiguration : refactoring
Patric Plitzner [Wed, 12 Feb 2014 08:36:42 +0000 (08:36 +0000)]
- added combo controller to combo field in DerivateSearchView
Andreas Kohlbecker [Tue, 11 Feb 2014 16:20:34 +0000 (16:20 +0000)]
solving #4056 (taxeditor responds with nicer dialogue in case a user executes a prohibited operation)
Cherian Mathew [Tue, 11 Feb 2014 15:30:51 +0000 (15:30 +0000)]
merge from trunk
Cherian Mathew [Tue, 11 Feb 2014 15:30:10 +0000 (15:30 +0000)]
added possibility to switch to remoting
Cherian Mathew [Tue, 11 Feb 2014 15:28:41 +0000 (15:28 +0000)]
remotingApplicationContext : removing configuration bean declaration
CdmApplicationRemoteController : removed call to init configuration bean via application context
CdmApplicationRemoteDefaultConfiguration : refactoring code to cplit configuration into default / remote
Patric Plitzner [Tue, 11 Feb 2014 12:15:16 +0000 (12:15 +0000)]
- additional fix for #3589 and #3588
Cherian Mathew [Tue, 11 Feb 2014 11:23:37 +0000 (11:23 +0000)]
config file to set target cdmserver
Cherian Mathew [Tue, 11 Feb 2014 11:21:45 +0000 (11:21 +0000)]
Adding new and modifying existing classes / resources for remoting.
- Added aspectj library dependencies : eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF, eu.etaxonomy.taxeditor.cdmlib/META-INF/aop.xml, eu.etaxonomy.taxeditor.cdmlib/pom.xml, eu.etaxonomy.taxeditor.cdmlib/lib/aspectjrt-1.7.1-sources.jar, eu.etaxonomy.taxeditor.cdmlib/lib/aspectjweaver-1.7.1-sources.jar
- Added aspects to initialize cdm entites / collections remotely : eu.etaxonomy.taxeditor.cdmlib/META-INF/aop.xml, eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/api/lazyloading/CdmLazyLoader.java
- Hibernate classes to be aspect woven (need these explicitly on client-side to set serial uuid) : eu.etaxonomy.taxeditor.cdmlib/src/main/java/org/hibernate/proxy/AbstractLazyInitializer.java, eu.etaxonomy.taxeditor.cdmlib/src/main/java/org/hibernate/collection/internal/AbstractPersistentCollection.java
- remote spring application context config files : eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml, remoting_persistence_security.xml, httpInvokerServiceClients.xml, remoting_services_security.xml
- Remote application controller which uses the remote spring application context : eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/remote/api/application/ICdmApplicationRemoteConfiguration.java,CdmApplicationRemoteController.java, CdmApplicationRemoteDefaultConfiguration.java
- Initial tests for remoting : eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/RemoteLazyLoadingTest.java, CdmApplicationRemoteControllerTest.java
Patric Plitzner [Tue, 11 Feb 2014 08:44:56 +0000 (08:44 +0000)]
- separated GUI from control elements for term combo widget (part of #3627)
Andreas Kohlbecker [Mon, 10 Feb 2014 18:22:57 +0000 (18:22 +0000)]
part 2 of preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)
Andreas Kohlbecker [Mon, 10 Feb 2014 13:59:16 +0000 (13:59 +0000)]
solving #4013 (GrantedAuthority: Humane label of TaxonNode authorities)
Andreas Müller [Fri, 7 Feb 2014 11:55:09 +0000 (11:55 +0000)]
move elevation back to first page #4037
Andreas Kohlbecker [Thu, 6 Feb 2014 14:18:20 +0000 (14:18 +0000)]
part 2 of fixing #2414 (Group updating doesn't work) by committing and restarting the transaction in the conversation
Andreas Kohlbecker [Thu, 6 Feb 2014 14:16:37 +0000 (14:16 +0000)]
more log.debug statements
Katja Luther [Thu, 6 Feb 2014 12:47:28 +0000 (12:47 +0000)]
Katja Luther [Thu, 6 Feb 2014 12:45:47 +0000 (12:45 +0000)]
adding the operation and handler files
Katja Luther [Thu, 6 Feb 2014 11:58:53 +0000 (11:58 +0000)]
move the change accepted to Synonym Operation to taxon navigator.
Andreas Müller [Wed, 5 Feb 2014 13:21:22 +0000 (13:21 +0000)]
changing label for sibling and child Polytomous Key, also change menu order #4029
Andreas Müller [Tue, 4 Feb 2014 17:20:08 +0000 (17:20 +0000)]
water -> watersurface #4031
Andreas Müller [Tue, 4 Feb 2014 15:14:08 +0000 (15:14 +0000)]
change statement to state(ment) #3864
Andreas Kohlbecker [Tue, 4 Feb 2014 12:25:55 +0000 (12:25 +0000)]
adding faq entry on crashes in KDE and other ubunu desktop environments
Andreas Kohlbecker [Tue, 4 Feb 2014 12:25:51 +0000 (12:25 +0000)]
add .gitignore
Andreas Kohlbecker [Mon, 3 Feb 2014 17:07:57 +0000 (17:07 +0000)]
solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker [Mon, 3 Feb 2014 17:07:25 +0000 (17:07 +0000)]
solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker [Mon, 3 Feb 2014 15:52:39 +0000 (15:52 +0000)]
adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker [Mon, 3 Feb 2014 15:51:29 +0000 (15:51 +0000)]
adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker [Mon, 3 Feb 2014 13:59:44 +0000 (13:59 +0000)]
fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946 - comment
Andreas Kohlbecker [Mon, 3 Feb 2014 13:54:33 +0000 (13:54 +0000)]
fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946
Cherian Mathew [Thu, 30 Jan 2014 09:19:34 +0000 (09:19 +0000)]
added exclusion filter for portal controllers
Cherian Mathew [Wed, 29 Jan 2014 16:39:37 +0000 (16:39 +0000)]
excluding vaading packages from component scan
Patric Plitzner [Wed, 29 Jan 2014 14:41:46 +0000 (14:41 +0000)]
- added persistence sources
Patric Plitzner [Wed, 29 Jan 2014 13:43:27 +0000 (13:43 +0000)]
- replaced togglable title cache field with text label to enter polytomous key label (fixes #3952)
Andreas Kohlbecker [Wed, 29 Jan 2014 13:10:44 +0000 (13:10 +0000)]
editor part done for #4006 (remove general map parameters from distribution and occurrence map service methods)
Andreas Kohlbecker [Wed, 29 Jan 2014 12:10:27 +0000 (12:10 +0000)]
preparing for removal of params - #4006 (remove general map parameters from distribution and occurrence map service methods)
Patric Plitzner [Wed, 29 Jan 2014 10:45:29 +0000 (10:45 +0000)]
- added *.xlsx and *.* to SpecimenCdmExcelImport file chooser (fixes #3971)
Patric Plitzner [Wed, 29 Jan 2014 07:58:59 +0000 (07:58 +0000)]
- implemented SynonymRelationship detail section for the DetailsView of Synonyms (#3588 #3589)
Patric Plitzner [Tue, 28 Jan 2014 13:20:22 +0000 (13:20 +0000)]
- removed switch for specific-details views
Patric Plitzner [Tue, 28 Jan 2014 12:59:52 +0000 (12:59 +0000)]
- removed remaining occurences of "campanula"
Patric Plitzner [Tue, 28 Jan 2014 12:30:33 +0000 (12:30 +0000)]
- removing campanula package completely 3/3
Patric Plitzner [Tue, 28 Jan 2014 12:29:49 +0000 (12:29 +0000)]
- removing campanula package completely 1/3
Patric Plitzner [Tue, 28 Jan 2014 12:28:08 +0000 (12:28 +0000)]
- moved ICdmFormElement to ui.element
Patric Plitzner [Tue, 28 Jan 2014 12:19:02 +0000 (12:19 +0000)]
- cleaned up package structure
- removed campanula package
Patric Plitzner [Tue, 28 Jan 2014 12:17:38 +0000 (12:17 +0000)]
- increased version number
- added sources