eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/command/DynamicMarkerTypeEditingMenu.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/command/DynamicNewObjectMenu.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/command/OpenBulkEditorContributionItem.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/command/SaveSpecimenCommand.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/derivedunit/handler/AbstractAddDerivedUnitFacadeMediaHandler.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/derivedunit/handler/AddDerivedUnitMediaHandler.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/derivedunit/handler/AddFieldObjectMediaHandler.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/referencingobjects/ReferencingObjectsContentProvider.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/referencingobjects/ReferencingObjectsLabelProvider.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/bulkeditor/referencingobjects/ReferencingObjectsView.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/DataImportEditor.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/DataImportEditorLineDisplayStrategy.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/DerivedUnitEditorInput.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientAgentService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientCdmRepository.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientClassificationService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientCollectionService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientDescriptionService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientNameService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientOccurenceService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientReferenceService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientTaxonService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/transientServices/TransientTermService.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/wizard/SpecimenSearchWizard.java -text
-eu.etaxonomy.taxeditor.bulkeditor/src/main/java/eu/etaxonomy/taxeditor/dataimport/wizard/SpecimenSearchWizardPage.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/test/java/eu/etaxonomy/taxeditor/bulkeditor/Application.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/test/java/eu/etaxonomy/taxeditor/bulkeditor/ApplicationActionBarAdvisor.java -text
eu.etaxonomy.taxeditor.bulkeditor/src/test/java/eu/etaxonomy/taxeditor/bulkeditor/ApplicationWorkbenchAdvisor.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/handler/OpenRelatedConceptHandler.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/operation/CreateConceptRelationOperation.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/concept/operation/DeleteConceptRelationOperation.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/DataImportEditor.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/DataImportEditorInput.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SaveSpecimenCommand.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SpecimenImportEditor.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SpecimenImportEditorInput.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SpecimenSearchWizard.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/SpecimenSearchWizardPage.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientAgentService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientCdmRepository.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientClassificationService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientDescriptionService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientNameService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientOccurenceService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientReferenceService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTaxonService.java -text
+eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/dataimport/transientServices/TransientTermService.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/CreateDerivateContextMenu.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/DerivateContentProvider.java -text
eu.etaxonomy.taxeditor.editor/src/main/java/eu/etaxonomy/taxeditor/editor/view/derivate/DerivateMenuPropertyTester.java -text
eu.etaxonomy.taxeditor.bulkeditor.handler,
eu.etaxonomy.taxeditor.bulkeditor.input,
eu.etaxonomy.taxeditor.bulkeditor.internal,
- eu.etaxonomy.taxeditor.bulkeditor.referencingobjects,
- eu.etaxonomy.taxeditor.dataimport,
- eu.etaxonomy.taxeditor.dataimport.wizard
+ eu.etaxonomy.taxeditor.bulkeditor.referencingobjects
Require-Bundle: org.eclipse.ui,
org.eclipse.core.runtime,
org.eclipse.ui.editors,
id="eu.etaxonomy.taxeditor.bulkeditor.command.derivedunit.addFieldObjectMedia"\r
name="Add Field Object Media">\r
</command>\r
- <command\r
- defaultHandler="eu.etaxonomy.taxeditor.bulkeditor.command.SaveSpecimenCommand"\r
- id="eu.etaxonomy.taxeditor.bulkeditor.saveSpecimen"\r
- name="Save Specimen">\r
- </command>\r
<!--command\r
defaultHandler="eu.etaxonomy.taxeditor.bulkeditor.handler.NewEntityHandler"\r
id="eu.etaxonomy.taxeditor.bulkeditor.command.new"\r
</showInPart>\r
</perspectiveExtension>\r
</extension>\r
- <extension\r
- point="org.eclipse.ui.importWizards">\r
- <wizard\r
- category="eu.etaxonomy.taxeditor.import.category.cdm"\r
- class="eu.etaxonomy.taxeditor.dataimport.wizard.SpecimenSearchWizard"\r
- id="eu.etaxonomy.taxeditor.dataimport.wizard.SpecimenSearchWizard"\r
- name="Query BioCASE">\r
- <description>\r
- Query BioCaseProvider\r
- </description>\r
- </wizard>\r
- </extension>
<!-- start set marker -->\r
\r
</plugin>\r
*/
package eu.etaxonomy.taxeditor.annotatedlineeditor;
-import java.util.ArrayList;
-import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import org.eclipse.ui.IEditorInput;
import org.eclipse.ui.texteditor.AbstractDocumentProvider;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
import eu.etaxonomy.taxeditor.bulkeditor.input.AbstractBulkEditorInput;
-import eu.etaxonomy.taxeditor.dataimport.DerivedUnitEditorInput;
import eu.etaxonomy.taxeditor.model.AbstractUtility;
if (element instanceof AbstractBulkEditorInput) {
return ((AbstractBulkEditorInput)element).getModel();
}
- else if(element instanceof DerivedUnitEditorInput){
- Collection<SpecimenOrObservationBase> results = ((DerivedUnitEditorInput) element).getResults();
- if(results!=null){
- return new ArrayList<SpecimenOrObservationBase>(results);
- }
- }
return null;
}
import eu.etaxonomy.taxeditor.bulkeditor.IBulkEditorConstants;
import eu.etaxonomy.taxeditor.bulkeditor.input.BulkEditorInputType;
-import eu.etaxonomy.taxeditor.dataimport.DataImportEditor;
/**
* <p>
contributionItems.add(new Separator(groupName));
contributionItems.add(BulkEditorInputType.USER.createContributionItem());
contributionItems.add(BulkEditorInputType.GROUP.createContributionItem());
- contributionItems.add(new Separator(groupName));
- contributionItems.add(createContributionItem("Search Specimen", DataImportEditor.ID));
return contributionItems.toArray(new IContributionItem[contributionItems.size()]);
}
+++ /dev/null
-package eu.etaxonomy.taxeditor.bulkeditor.command;
-
-import org.eclipse.core.commands.AbstractHandler;
-import org.eclipse.core.commands.ExecutionEvent;
-import org.eclipse.core.commands.ExecutionException;
-import org.eclipse.jface.viewers.ISelection;
-import org.eclipse.ui.IWorkbenchPart;
-import org.eclipse.ui.IWorkbenchWindow;
-import org.eclipse.ui.PlatformUI;
-import org.springframework.transaction.TransactionStatus;
-
-import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration;
-import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
-import eu.etaxonomy.cdm.api.service.IOccurrenceService;
-import eu.etaxonomy.cdm.model.location.NamedArea;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
-import eu.etaxonomy.taxeditor.dataimport.DataImportEditor;
-import eu.etaxonomy.taxeditor.model.AbstractUtility;
-import eu.etaxonomy.taxeditor.model.LineSelection;
-import eu.etaxonomy.taxeditor.store.CdmStore;
-
-public class SaveSpecimenCommand extends AbstractHandler {
-
- /* (non-Javadoc)
- * @see org.eclipse.core.commands.IHandler#execute(org.eclipse.core.commands.ExecutionEvent)
- */
- @Override
- public Object execute(ExecutionEvent event) throws ExecutionException {
- final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
- final ISelection selection = window.getActivePage().getSelection();
- if(selection instanceof LineSelection){
- LineSelection line = (LineSelection)selection;
- Object firstElement = line.getFirstElement();
- if(firstElement instanceof SpecimenOrObservationBase){
- IWorkbenchPart activePart = AbstractUtility.getActivePart();
- if(activePart instanceof DataImportEditor){
- DataImportEditor dataImportEditor = (DataImportEditor)activePart;
-
- ICdmApplicationConfiguration currentApplicationConfiguration = CdmStore.getCurrentApplicationConfiguration();
-// currentApplicationConfiguration.getOccurrenceService().saveOrUpdate(CdmBase.deproxy(firstElement, SpecimenOrObservationBase.class));
- TransactionStatus tx = currentApplicationConfiguration.startTransaction();
-
- DerivedUnitFacade unit1 = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
- // newInstance.setTitleCache("Test Specimen", true);
- unit1.setCollectingMethod("Collected from the ground");
- unit1.setAccessionNumber("ACC-12345");
- unit1.setLocality("locality");
- unit1.setCountry(NamedArea.EUROPE());
-
-
-
-
-// currentApplicationConfiguration.getOccurrenceService().saveOrUpdate((SpecimenOrObservationBase) firstElement);
- CdmStore.getService(IOccurrenceService.class).saveOrUpdate(unit1.innerDerivedUnit());
- currentApplicationConfiguration.commitTransaction(tx);
-
- dataImportEditor.getConversationHolder().commit(true);
- }
- }
- }
- return null;
- }
-
-}
+++ /dev/null
-// $Id$
-/**
-* Copyright (C) 2013 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-package eu.etaxonomy.taxeditor.dataimport;
-
-import org.eclipse.core.runtime.CoreException;
-import org.eclipse.core.runtime.IProgressMonitor;
-import org.eclipse.jface.text.source.AnnotationModel;
-import org.eclipse.ui.IEditorInput;
-import org.eclipse.ui.IEditorSite;
-import org.eclipse.ui.IMemento;
-import org.eclipse.ui.PartInitException;
-
-import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
-import eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineEditor;
-import eu.etaxonomy.taxeditor.model.IContextListener;
-import eu.etaxonomy.taxeditor.store.CdmStore;
-
-/**
- * @author pplitzner
- * @date 20.09.2013
- *
- */
-public class DataImportEditor extends AnnotatedLineEditor implements IContextListener {
-
- /** Constant <code>ID="bulkeditor.input.nameRelationship"</code> */
- public static final String ID = "eu.etaxonomy.taxeditor.dataimport.DataImportEditor";
-
- /**
- * Constructs a new DataImportEditor with a new {@link ConversationHolder}
- */
- public DataImportEditor() {
- super(null);
- CdmStore.getContextManager().addContextListener(this);
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.texteditor.AbstractTextEditor#init(org.eclipse.ui.IEditorSite, org.eclipse.ui.IEditorInput)
- */
- @Override
- public void init(IEditorSite site, IEditorInput input) throws PartInitException {
- super.init(site, input);
- conversation = ((DerivedUnitEditorInput)input).getConversationHolder();
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.editors.text.TextEditor#initializeEditor()
- */
- /** {@inheritDoc} */
- @Override
- protected void initializeEditor() {
- super.initializeEditor();
- setLineDisplayStrategy(new DataImportEditorLineDisplayStrategy());
- setEditorContextMenuId("#DataImportEditorContext");
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineEditor#dispose()
- */
- @Override
- public void dispose() {
- super.dispose();
- CdmStore.getContextManager().removeContextListener(this);
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineEditor#doSetInput(org.eclipse.ui.IEditorInput)
- */
- @Override
- protected void doSetInput(IEditorInput input) throws CoreException {
- super.doSetInput(input);
- setPartName(input.getName());
- setTitleToolTip(input.getName());
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.model.IContextListener#contextAboutToStop(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
- */
- @Override
- public void contextAboutToStop(IMemento memento, IProgressMonitor monitor) {
- // TODO Auto-generated method stub
- System.out.println();
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.model.IContextListener#contextStop(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
- */
- @Override
- public void contextStop(IMemento memento, IProgressMonitor monitor) {
- // TODO Auto-generated method stub
- System.out.println();
-
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.model.IContextListener#contextStart(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
- */
- @Override
- public void contextStart(IMemento memento, IProgressMonitor monitor) {
- // TODO Auto-generated method stub
- System.out.println();
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.model.IContextListener#contextRefresh(org.eclipse.core.runtime.IProgressMonitor)
- */
- @Override
- public void contextRefresh(IProgressMonitor monitor) {
- if(getDocumentProvider().getAnnotationModel(getEditorInput()) != null){
- ((AnnotationModel) getDocumentProvider().getAnnotationModel(getEditorInput())).removeAllAnnotations();
- }
- setInput(getEditorInput());
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.model.IContextListener#workbenchShutdown(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
- */
- @Override
- public void workbenchShutdown(IMemento memento, IProgressMonitor monitor) {
- // TODO Auto-generated method stub
- System.out.println();
- }
-
-}
+++ /dev/null
-// $Id$
-/**
-* Copyright (C) 2013 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-package eu.etaxonomy.taxeditor.dataimport;
-
-import org.eclipse.swt.graphics.Font;
-import org.eclipse.swt.graphics.Image;
-
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
-import eu.etaxonomy.taxeditor.annotatedlineeditor.EntityListener;
-import eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy;
-
-/**
- * @author pplitzner
- * @date 20.09.2013
- *
- */
-public class DataImportEditorLineDisplayStrategy implements ILineDisplayStrategy {
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getIndent(java.lang.Object)
- */
- @Override
- public int getIndent(Object entity) {
- // TODO Auto-generated method stub
- return 0;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getIcon(java.lang.Object)
- */
- @Override
- public Image getIcon(Object entity) {
- // TODO Auto-generated method stub
- return null;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getFont(java.lang.Object)
- */
- @Override
- public Font getFont(Object entity) {
- // TODO Auto-generated method stub
- return null;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getText(java.lang.Object)
- */
- @Override
- public String getText(Object entity) {
- return ((SpecimenOrObservationBase)entity).getTitleCache();
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getSupplementalText(java.lang.Object)
- */
- @Override
- public String getSupplementalText(Object entity) {
- return "";
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getEmptyCacheMessage(java.lang.Object)
- */
- @Override
- public String getEmptyCacheMessage(Object entity) {
- // TODO Auto-generated method stub
- return null;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#setText(java.lang.String, java.lang.Object)
- */
- @Override
- public void setText(String text, Object entity) {
- // TODO Auto-generated method stub
-
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#getHoverText(java.lang.Object)
- */
- @Override
- public String getHoverText(Object entity) {
- return ((SpecimenOrObservationBase)entity).getTitleCache();
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#setStatusMessage(java.lang.String, java.lang.Object)
- */
- @Override
- public void setStatusMessage(String text, Object entity) {
- // TODO Auto-generated method stub
-
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#isEntityCacheEmpty(java.lang.Object)
- */
- @Override
- public boolean isEntityCacheEmpty(Object entity) {
- // TODO Auto-generated method stub
- return false;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.taxeditor.annotatedlineeditor.ILineDisplayStrategy#addDisplayListener(java.lang.Object, eu.etaxonomy.taxeditor.annotatedlineeditor.EntityListener)
- */
- @Override
- public void addDisplayListener(Object entity, EntityListener listener) {
- // TODO Auto-generated method stub
-
- }
-
-}
+++ /dev/null
-// $Id$
-/**
-* Copyright (C) 2013 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-package eu.etaxonomy.taxeditor.dataimport;
-
-import java.io.IOException;
-import java.io.InputStream;
-import java.net.URISyntaxException;
-import java.util.Collection;
-
-import org.apache.http.client.ClientProtocolException;
-import org.apache.log4j.Logger;
-import org.eclipse.jface.resource.ImageDescriptor;
-import org.eclipse.swt.widgets.Display;
-import org.eclipse.ui.IEditorInput;
-import org.eclipse.ui.IPersistableElement;
-
-import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
-import eu.etaxonomy.cdm.ext.biocase.BioCaseQuery;
-import eu.etaxonomy.cdm.ext.biocase.BioCaseQueryServiceWrapper;
-import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
-import eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
-import eu.etaxonomy.taxeditor.dataimport.transientServices.TransientCdmRepository;
-import eu.etaxonomy.taxeditor.store.CdmStore;
-
-/**
- * @author pplitzner
- * @date 20.09.2013
- *
- */
-public class DerivedUnitEditorInput implements IEditorInput {
-
- private static Logger logger = Logger.getLogger(DerivedUnitEditorInput.class);
-
- private final BioCaseQuery query;
-
- private Collection<SpecimenOrObservationBase> results;
-
- private final ConversationHolder conversationHolder;
-
- /**
- * @param results
- */
- public DerivedUnitEditorInput(BioCaseQuery query) {
- this.conversationHolder = CdmStore.createConversation();
- this.query = query;
- }
-
- public void query(){
- String errorMessage = "Could not execute query " + DerivedUnitEditorInput.this.query;
- try {
- InputStream resultStream = new BioCaseQueryServiceWrapper().query(DerivedUnitEditorInput.this.query);
- Abcd206ImportConfigurator configurator = Abcd206ImportConfigurator.NewInstance(resultStream, null, false);
- TransientCdmRepository repo =
- new TransientCdmRepository(CdmStore.getCurrentApplicationConfiguration());
- configurator.setCdmAppController(repo);
-
- CdmDefaultImport<Abcd206ImportConfigurator> importer = new CdmDefaultImport<Abcd206ImportConfigurator>();
- importer.invoke(configurator);
- results = repo.getUnits();
- // Abcd206Import abcd206Import = new Abcd206Import();
- // Abcd206ImportState state = new Abcd206ImportState(configurator);
- // abcd206Import.invoke(state);
- // state.countTrees();
- } catch (ClientProtocolException e) {
- logger.error(errorMessage, e);
- } catch (IOException e) {
- logger.error(errorMessage, e);
- } catch (URISyntaxException e) {
- logger.error(errorMessage, e);
- }
-
- Display.getDefault().asyncExec(new Runnable() {
-
- @Override
- public void run() {
- CdmStore.getContextManager().notifyContextRefresh();
- }
- });
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.core.runtime.IAdaptable#getAdapter(java.lang.Class)
- */
- @Override
- public Object getAdapter(Class adapter) {
- // TODO Auto-generated method stub
- return null;
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.IEditorInput#exists()
- */
- @Override
- public boolean exists() {
- return false;
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.IEditorInput#getImageDescriptor()
- */
- @Override
- public ImageDescriptor getImageDescriptor() {
- // TODO Auto-generated method stub
- return null;
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.IEditorInput#getName()
- */
- @Override
- public String getName() {
- return query.toString();
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.IEditorInput#getPersistable()
- */
- @Override
- public IPersistableElement getPersistable() {
- return null;
- }
-
- /* (non-Javadoc)
- * @see org.eclipse.ui.IEditorInput#getToolTipText()
- */
- @Override
- public String getToolTipText() {
- return query.toString();
- }
-
- /**
- * @return the results
- */
- public Collection<SpecimenOrObservationBase> getResults() {
- return results;
- }
-
- /**
- * @return the conversationHolder
- */
- public ConversationHolder getConversationHolder() {
- return conversationHolder;
- }
-
- /* (non-Javadoc)
- * @see java.lang.Object#hashCode()
- */
- @Override
- public int hashCode() {
- final int prime = 31;
- int result = 1;
- result = prime * result + ((query == null) ? 0 : query.hashCode());
- return result;
- }
-
- /* (non-Javadoc)
- * @see java.lang.Object#equals(java.lang.Object)
- */
- @Override
- public boolean equals(Object obj) {
- if (this == obj) {
- return true;
- }
- if (obj == null) {
- return false;
- }
- if (getClass() != obj.getClass()) {
- return false;
- }
- DerivedUnitEditorInput other = (DerivedUnitEditorInput) obj;
- if (query == null) {
- if (other.query != null) {
- return false;
- }
- } else if (!query.equals(other.query)) {
- return false;
- }
- return true;
- }
-
-}
+++ /dev/null
-// $Id$
-/**
-* Copyright (C) 2013 EDIT
-* European Distributed Institute of Taxonomy
-* http://www.e-taxonomy.eu
-*
-* The contents of this file are subject to the Mozilla Public License Version 1.1
-* See LICENSE.TXT at the top of this package for the full license terms.
-*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
-
-import java.util.List;
-import java.util.Map;
-import java.util.Set;
-import java.util.UUID;
-
-import org.hibernate.LockMode;
-import org.hibernate.Session;
-import org.hibernate.criterion.Criterion;
-import org.hibernate.envers.query.criteria.AuditCriterion;
-
-import eu.etaxonomy.cdm.api.service.ICollectionService;
-import eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator;
-import eu.etaxonomy.cdm.api.service.exception.ReferencedObjectUndeletableException;
-import eu.etaxonomy.cdm.api.service.pager.Pager;
-import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
-import eu.etaxonomy.cdm.model.common.Annotation;
-import eu.etaxonomy.cdm.model.common.ISourceable;
-import eu.etaxonomy.cdm.model.common.IdentifiableSource;
-import eu.etaxonomy.cdm.model.common.LSID;
-import eu.etaxonomy.cdm.model.common.Marker;
-import eu.etaxonomy.cdm.model.common.MarkerType;
-import eu.etaxonomy.cdm.model.common.UuidAndTitleCache;
-import eu.etaxonomy.cdm.model.media.Rights;
-import eu.etaxonomy.cdm.model.occurrence.Collection;
-import eu.etaxonomy.cdm.model.view.AuditEvent;
-import eu.etaxonomy.cdm.model.view.AuditEventRecord;
-import eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort;
-import eu.etaxonomy.cdm.persistence.query.Grouping;
-import eu.etaxonomy.cdm.persistence.query.MatchMode;
-import eu.etaxonomy.cdm.persistence.query.OrderHint;
-import eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy;
-import eu.etaxonomy.cdm.strategy.match.IMatchStrategy;
-import eu.etaxonomy.cdm.strategy.merge.IMergeStrategy;
-
-/**
- * @author pplitzner
- * @date 27.09.2013
- *
- */
-public class TransientCollectionService implements ICollectionService {
-
- private ICollectionService defaultCollectionService;
-
- /**
- * @param defaultCollectionService
- */
- public TransientCollectionService(ICollectionService defaultCollectionService) {
- this.defaultCollectionService = defaultCollectionService;
- }
-
- /**
- * @param clazz
- * @param query
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.ICollectionService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Pager<Collection> search(Class<? extends Collection> clazz, String query, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.search(clazz, query, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param t
- * @param pageSize
- * @param pageNumber
- * @param sort
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
- */
- @Override
- public Pager<AuditEventRecord<Collection>> pageAuditEvents(Collection t, Integer pageSize, Integer pageNumber, AuditEventSort sort, List<String> propertyPaths) {
- return defaultCollectionService.pageAuditEvents(t, pageSize, pageNumber, sort, propertyPaths);
- }
-
- /**
- * @param annotatedObj
- * @param status
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Pager<Annotation> getAnnotations(Collection annotatedObj, MarkerType status, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.getAnnotations(annotatedObj, status, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- *
- * @see eu.etaxonomy.cdm.api.service.IService#clear()
- */
- @Override
- public void clear() {
- defaultCollectionService.clear();
- }
-
- /**
- * @param t
- * @param lockMode
- * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
- */
- @Override
- public void lock(Collection t, LockMode lockMode) {
- defaultCollectionService.lock(t, lockMode);
- }
-
- /**
- * @param t
- * @param lockMode
- * @param propertyPaths
- * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
- */
- @Override
- public void refresh(Collection t, LockMode lockMode, List<String> propertyPaths) {
- defaultCollectionService.refresh(t, lockMode, propertyPaths);
- }
-
- /**
- *
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
- */
- @Override
- public void updateTitleCache() {
- defaultCollectionService.updateTitleCache();
- }
-
- /**
- * @param t
- * @return
- * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
- */
- @Override
- public AuditEventRecord<Collection> getNextAuditEvent(Collection t) {
- return defaultCollectionService.getNextAuditEvent(t);
- }
-
- /**
- * @param code
- * @return
- * @see eu.etaxonomy.cdm.api.service.ICollectionService#searchByCode(java.lang.String)
- */
- @Override
- public List<Collection> searchByCode(String code) {
- return defaultCollectionService.searchByCode(code);
- }
-
- /**
- * @param annotatableEntity
- * @param technical
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Pager<Marker> getMarkers(Collection annotatableEntity, Boolean technical, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.getMarkers(annotatableEntity, technical, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param clazz
- * @param stepSize
- * @param cacheStrategy
- * @param monitor
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
- */
- @Override
- public void updateTitleCache(Class<? extends Collection> clazz, Integer stepSize, IIdentifiableEntityCacheStrategy<Collection> cacheStrategy, IProgressMonitor monitor) {
- defaultCollectionService.updateTitleCache(clazz, stepSize, cacheStrategy, monitor);
- }
-
- /**
- * @param t
- * @return
- * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
- */
- @Override
- public AuditEventRecord<Collection> getPreviousAuditEvent(Collection t) {
- return defaultCollectionService.getPreviousAuditEvent(t);
- }
-
- /**
- * @param clazz
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
- */
- @Override
- public int count(Class<? extends Collection> clazz) {
- return defaultCollectionService.count(clazz);
- }
-
- /**
- * @param clazz
- * @param from
- * @param to
- * @param criteria
- * @param pageSize
- * @param pageValue
- * @param sort
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
- */
- @Override
- public Pager<AuditEventRecord<Collection>> pageAuditEvents(Class<? extends Collection> clazz, AuditEvent from, AuditEvent to, List<AuditCriterion> criteria, Integer pageSize, Integer pageValue, AuditEventSort sort, List<String> propertyPaths) {
- return defaultCollectionService.pageAuditEvents(clazz, from, to, criteria, pageSize, pageValue, sort, propertyPaths);
- }
-
- /**
- * @param lsid
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
- */
- @Override
- public Collection find(LSID lsid) {
- return defaultCollectionService.find(lsid);
- }
-
- /**
- * @param persistentObject
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public UUID delete(Collection persistentObject) throws ReferencedObjectUndeletableException{
- return defaultCollectionService.delete(persistentObject);
- }
-
- /**
- * @param clazz
- * @param technical
- * @param pageSize
- * @param pageNumber
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
- */
- @Override
- public List<Object[]> groupMarkers(Class<? extends Collection> clazz, Boolean technical, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
- return defaultCollectionService.groupMarkers(clazz, technical, pageSize, pageNumber, propertyPaths);
- }
-
- /**
- * @param uuid
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
- */
- @Override
- public boolean exists(UUID uuid) {
- return defaultCollectionService.exists(uuid);
- }
-
- /**
- * @param x
- * @param y
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
- */
- @Override
- public Collection replace(Collection x, Collection y) {
- return defaultCollectionService.replace(x, y);
- }
-
- /**
- * @param uuidSet
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
- */
- @Override
- public List<Collection> find(Set<UUID> uuidSet) {
- return defaultCollectionService.find(uuidSet);
- }
-
- /**
- * @param t
- * @param pageSize
- * @param pageNumber
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
- */
- @Override
- public Pager<IdentifiableSource> getSources(Collection t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
- return defaultCollectionService.getSources(t, pageSize, pageNumber, propertyPaths);
- }
-
- /**
- * @param uuid
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
- */
- @Override
- public Collection find(UUID uuid) {
- return defaultCollectionService.find(uuid);
- }
-
- /**
- * @param id
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#find(int)
- */
- @Override
- public Collection find(int id) {
- return defaultCollectionService.find(id);
- }
-
- /**
- * @param t
- * @param pageSize
- * @param pageNumber
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
- */
- @Override
- public Pager<Rights> getRights(Collection t, Integer pageSize, Integer pageNumber, List<String> propertyPaths) {
- return defaultCollectionService.getRights(t, pageSize, pageNumber, propertyPaths);
- }
-
- /**
- * @param clazz
- * @param technical
- * @return
- * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
- */
- @Override
- public int countMarkers(Class<? extends Collection> clazz, Boolean technical) {
- return defaultCollectionService.countMarkers(clazz, technical);
- }
-
- /**
- * @param idSet
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
- */
- @Override
- public List<Collection> findById(Set<Integer> idSet) {
- return defaultCollectionService.findById(idSet);
- }
-
- /**
- * @param clazz
- * @param idInSource
- * @param idNamespace
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
- */
- @Override
- public ISourceable getSourcedObjectByIdInSource(Class clazz, String idInSource, String idNamespace) {
- return defaultCollectionService.getSourcedObjectByIdInSource(clazz, idInSource, idNamespace);
- }
-
- /**
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#getSession()
- */
- @Override
- public Session getSession() {
- return defaultCollectionService.getSession();
- }
-
- /**
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
- */
- @Override
- public List<UuidAndTitleCache<Collection>> getUuidAndTitleCache() {
- return defaultCollectionService.getUuidAndTitleCache();
- }
-
- /**
- * @param clazz
- * @param limit
- * @param start
- * @param groups
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public List<Object[]> group(Class<? extends Collection> clazz, Integer limit, Integer start, List<Grouping> groups, List<String> propertyPaths) {
- return defaultCollectionService.group(clazz, limit, start, groups, propertyPaths);
- }
-
- /**
- * @param clazz
- * @param queryString
- * @param matchmode
- * @param criteria
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Pager<Collection> findByTitle(Class<? extends Collection> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.findByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param type
- * @param limit
- * @param start
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public List<Collection> list(Class<? extends Collection> type, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.list(type, limit, start, orderHints, propertyPaths);
- }
-
- /**
- * @param configurator
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
- */
- @Override
- public Pager<Collection> findByTitle(IIdentifiableEntityServiceConfigurator<Collection> configurator) {
- return defaultCollectionService.findByTitle(configurator);
- }
-
- /**
- * @param clazz
- * @param queryString
- * @param matchmode
- * @param criteria
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
- */
- @Override
- public Integer countByTitle(Class<? extends Collection> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria) {
- return defaultCollectionService.countByTitle(clazz, queryString, matchmode, criteria);
- }
-
- /**
- * @param uuid
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
- */
- @Override
- public Collection load(UUID uuid) {
- return defaultCollectionService.load(uuid);
- }
-
- /**
- * @param uuid
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
- */
- @Override
- public Collection load(UUID uuid, List<String> propertyPaths) {
- return defaultCollectionService.load(uuid, propertyPaths);
- }
-
- /**
- * @param configurator
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
- */
- @Override
- public Integer countByTitle(IIdentifiableEntityServiceConfigurator<Collection> configurator) {
- return defaultCollectionService.countByTitle(configurator);
- }
-
- /**
- * @param transientObject
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public Collection merge(Collection transientObject) {
- return defaultCollectionService.merge(transientObject);
- }
-
- /**
- * @param clazz
- * @param queryString
- * @param matchmode
- * @param criteria
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public List<Collection> listByTitle(Class<? extends Collection> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.listByTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param type
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public Pager<Collection> page(Class<? extends Collection> type, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.page(type, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param persistentObject
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public UUID refresh(Collection persistentObject) {
- return defaultCollectionService.refresh(persistentObject);
- }
-
- /**
- * @param clazz
- * @param queryString
- * @param matchmode
- * @param criteria
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public List<Collection> listByReferenceTitle(Class<? extends Collection> clazz, String queryString, MatchMode matchmode, List<Criterion> criteria, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.listByReferenceTitle(clazz, queryString, matchmode, criteria, pageSize, pageNumber, orderHints, propertyPaths);
- }
-
- /**
- * @param tableName
- * @param limit
- * @param start
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
- */
- @Override
- public List<Collection> rows(String tableName, int limit, int start) {
- return defaultCollectionService.rows(tableName, limit, start);
- }
-
- /**
- * @param newInstances
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
- */
- @Override
- public Map<UUID, Collection> save(java.util.Collection<Collection> newInstances) {
- return null;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public UUID save(Collection newInstance) {
- return null;
- }
-
- /* (non-Javadoc)
- * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public UUID saveOrUpdate(Collection transientObject) {
- return null;
- }
-
- /**
- * @param transientObjects
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
- */
- @Override
- public Map<UUID, Collection> saveOrUpdate(java.util.Collection<Collection> transientObjects) {
- return null;
- }
-
- /**
- * @param transientObject
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
- */
- @Override
- public UUID update(Collection transientObject) {
- return defaultCollectionService.update(transientObject);
- }
-
- /**
- * @param example
- * @param includeProperties
- * @param limit
- * @param start
- * @param orderHints
- * @param propertyPaths
- * @return
- * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
- */
- @Override
- public List<Collection> list(Collection example, Set<String> includeProperties, Integer limit, Integer start, List<OrderHint> orderHints, List<String> propertyPaths) {
- return defaultCollectionService.list(example, includeProperties, limit, start, orderHints, propertyPaths);
- }
-
- /**
- * @param clazz
- * @param matchStrategy
- * @param mergeStrategy
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
- */
- @Override
- public int deduplicate(Class<? extends Collection> clazz, IMatchStrategy matchStrategy, IMergeStrategy mergeStrategy) {
- return defaultCollectionService.deduplicate(clazz, matchStrategy, mergeStrategy);
- }
-
- /**
- * @param clazz
- * @param queryString
- * @param pageSize
- * @param pageNumber
- * @param orderHints
- * @param matchMode
- * @return
- * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
- */
- @Override
- public Pager<Collection> findTitleCache(Class<? extends Collection> clazz, String queryString, Integer pageSize, Integer pageNumber, List<OrderHint> orderHints, MatchMode matchMode) {
- return defaultCollectionService.findTitleCache(clazz, queryString, pageSize, pageNumber, orderHints, matchMode);
- }
-
-
-
-}
eu.etaxonomy.taxeditor.editor.internal,
eu.etaxonomy.taxeditor.editor.name,
eu.etaxonomy.taxeditor.editor.name.handler,
+ eu.etaxonomy.taxeditor.editor.view.dataimport,
eu.etaxonomy.taxeditor.editor.view.descriptive,
eu.etaxonomy.taxeditor.editor.view.media,
eu.etaxonomy.taxeditor.editor.view.uses
id="eu.etaxonomy.taxeditor.editor.view.derivate.DerivateView"
name="Derivate View">
</editor>
+ <editor
+ class="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportEditor"
+ default="false"
+ id="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportEditor"
+ name="Specimen Import Editor">
+ </editor>
</extension>
<extension
point="org.eclipse.ui.views">
</visibleWhen>
</menu>
</menuContribution>
+ <menuContribution
+ locationURI="popup:eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportEditor">
+ <command
+ commandId="eu.etaxonomy.taxeditor.editor.view.dataimport.SaveSpecimenCommand"
+ label="Save Specimen"
+ style="push">
+ </command>
+ </menuContribution>
id="eu.etaxonomy.taxeditor.editor.handler.openDerivateView"
name="Open Derivate View">
</command>
+ <command
+ defaultHandler="eu.etaxonomy.taxeditor.editor.view.dataimport.SaveSpecimenCommand"
+ id="eu.etaxonomy.taxeditor.editor.view.dataimport.SaveSpecimenCommand"
+ name="Save Specimen">
+ </command>
</extension>
<extension
point="org.eclipse.core.expressions.definitions">
name="Taxonomic Editor Default Key Bindings">
</scheme>
</extension>
+ <extension
+ point="org.eclipse.ui.importWizards">
+ <wizard
+ category="eu.etaxonomy.taxeditor.import.category.cdm"
+ class="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenSearchWizard"
+ id="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenSearchWizard"
+ name="Query BioCASE">
+ <description>
+ Query BioCaseProvider
+ </description>
+ </wizard>
+ </extension>
</plugin>
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2013 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
+
+import org.eclipse.core.runtime.IProgressMonitor;
+import org.eclipse.jface.action.MenuManager;
+import org.eclipse.jface.viewers.TableViewer;
+import org.eclipse.swt.SWT;
+import org.eclipse.swt.widgets.Composite;
+import org.eclipse.swt.widgets.Control;
+import org.eclipse.swt.widgets.Menu;
+import org.eclipse.swt.widgets.Table;
+import org.eclipse.swt.widgets.TableItem;
+import org.eclipse.ui.IEditorInput;
+import org.eclipse.ui.IEditorSite;
+import org.eclipse.ui.IMemento;
+import org.eclipse.ui.PartInitException;
+import org.eclipse.ui.part.EditorPart;
+
+import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
+import eu.etaxonomy.cdm.api.conversation.IConversationEnabled;
+import eu.etaxonomy.cdm.model.common.IIdentifiableEntity;
+import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
+import eu.etaxonomy.taxeditor.model.IContextListener;
+import eu.etaxonomy.taxeditor.model.IDirtyMarkableSelectionProvider;
+import eu.etaxonomy.taxeditor.model.IPartContentHasDetails;
+import eu.etaxonomy.taxeditor.model.IPartContentHasFactualData;
+import eu.etaxonomy.taxeditor.model.IPartContentHasSupplementalData;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+/**
+ * Editor which shows a list of "data" that can be imported into the CDM
+ * @author pplitzner
+ * @date 20.09.2013
+ *
+ */
+public abstract class DataImportEditor<T extends IIdentifiableEntity> extends EditorPart implements IPartContentHasFactualData, IDirtyMarkableSelectionProvider,
+IConversationEnabled, IPartContentHasDetails, IPartContentHasSupplementalData, IContextListener{
+
+ private ConversationHolder conversation;
+
+ private TableViewer tableViewer;
+
+ /**
+ * Constructs a new DataImportEditor with a new {@link ConversationHolder}
+ */
+ public DataImportEditor() {
+ CdmStore.getContextManager().addContextListener(this);
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.WorkbenchPart#createPartControl(org.eclipse.swt.widgets.Composite)
+ */
+ @Override
+ public void createPartControl(Composite parent) {
+
+ Table table = new Table(parent, SWT.BORDER | SWT.MULTI | SWT.FULL_SELECTION);
+ table.setHeaderVisible(true);//TODO: set header title as BioCase query
+ table.setLinesVisible(true);
+ tableViewer = new TableViewer(table);
+
+ // Propagate selection from viewer
+ getSite().setSelectionProvider(tableViewer);
+
+ //create context menu
+ MenuManager menuManager = new MenuManager();
+ getSite().registerContextMenu(menuManager, tableViewer);
+ Control control = tableViewer.getControl();
+ Menu menu = menuManager.createContextMenu(control);
+ control.setMenu(menu);
+
+ IEditorInput editorInput = getEditorInput();
+ if(editorInput instanceof DataImportEditorInput){
+ for(T specimen:((DataImportEditorInput<T>) editorInput).getResults()){
+ TableItem tableItem = new TableItem(table, SWT.NONE);
+ tableItem.setText(specimen.generateTitle());
+ tableItem.setData(specimen);
+ }
+ }
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.WorkbenchPart#setFocus()
+ */
+ @Override
+ public void setFocus() {
+ //make sure to bind again if maybe in another view the conversation was unbound
+ if(!conversation.isBound()){
+ conversation.bind();
+ }
+ }
+
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.texteditor.AbstractTextEditor#init(org.eclipse.ui.IEditorSite, org.eclipse.ui.IEditorInput)
+ */
+ @Override
+ public void init(IEditorSite site, IEditorInput input) throws PartInitException {
+ setSite(site);
+ setInput(input);
+ setPartName(input.getName());
+ setTitleToolTip(input.getName());
+ conversation = ((DataImportEditorInput)input).getConversationHolder();
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.annotatedlineeditor.AnnotatedLineEditor#dispose()
+ */
+ @Override
+ public void dispose() {
+ super.dispose();
+ CdmStore.getContextManager().removeContextListener(this);
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IContextListener#contextAboutToStop(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void contextAboutToStop(IMemento memento, IProgressMonitor monitor) {
+ //nothing
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IContextListener#contextStop(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void contextStop(IMemento memento, IProgressMonitor monitor) {
+ //nothing
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IContextListener#contextStart(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void contextStart(IMemento memento, IProgressMonitor monitor) {
+ //nothing
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IContextListener#contextRefresh(org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void contextRefresh(IProgressMonitor monitor) {
+ setInput(getEditorInput());
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IContextListener#workbenchShutdown(org.eclipse.ui.IMemento, org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void workbenchShutdown(IMemento memento, IProgressMonitor monitor) {
+ if(conversation!=null &&!conversation.isClosed()) {
+ conversation.close();
+ }
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.persistence.hibernate.ICdmPostDataChangeObserver#update(eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap)
+ */
+ @Override
+ public void update(CdmDataChangeMap changeEvents) {
+ //nothing
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.cdm.api.conversation.IConversationEnabled#getConversationHolder()
+ */
+ @Override
+ public ConversationHolder getConversationHolder() {
+ return conversation;
+ }
+
+ /* (non-Javadoc)
+ * @see eu.etaxonomy.taxeditor.model.IDirtyMarkableSelectionProvider#changed(java.lang.Object)
+ */
+ @Override
+ public void changed(Object element) {
+ // cannot be changed
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.EditorPart#doSave(org.eclipse.core.runtime.IProgressMonitor)
+ */
+ @Override
+ public void doSave(IProgressMonitor monitor) {
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.EditorPart#doSaveAs()
+ */
+ @Override
+ public void doSaveAs() {
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.EditorPart#isDirty()
+ */
+ @Override
+ public boolean isDirty() {
+ return false;
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.part.EditorPart#isSaveAsAllowed()
+ */
+ @Override
+ public boolean isSaveAsAllowed() {
+ return false;
+ }
+
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
+
+import java.util.Collection;
+
+import org.apache.log4j.Logger;
+import org.eclipse.jface.resource.ImageDescriptor;
+import org.eclipse.ui.IEditorInput;
+import org.eclipse.ui.IPersistableElement;
+
+import eu.etaxonomy.cdm.api.conversation.ConversationHolder;
+import eu.etaxonomy.cdm.model.common.IIdentifiableEntity;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+/**
+ * @author pplitzner
+ * @date 25.02.2014
+ *
+ */
+public abstract class DataImportEditorInput<T extends IIdentifiableEntity> implements IEditorInput {
+
+ private static Logger logger = Logger.getLogger(DataImportEditorInput.class);
+
+ private Collection<T> results;
+
+ private final ConversationHolder conversationHolder;
+
+ /**
+ * @param results
+ */
+ public DataImportEditorInput() {
+ this.conversationHolder = CdmStore.createConversation();
+ }
+
+
+ /* (non-Javadoc)
+ * @see org.eclipse.core.runtime.IAdaptable#getAdapter(java.lang.Class)
+ */
+ @Override
+ public Object getAdapter(Class adapter) {
+ // TODO Auto-generated method stub
+ return null;
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.IEditorInput#exists()
+ */
+ @Override
+ public boolean exists() {
+ return false;
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.IEditorInput#getImageDescriptor()
+ */
+ @Override
+ public ImageDescriptor getImageDescriptor() {
+ // TODO Auto-generated method stub
+ return null;
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.IEditorInput#getPersistable()
+ */
+ @Override
+ public IPersistableElement getPersistable() {
+ return null;
+ }
+
+ /**
+ * @return the results
+ */
+ public Collection<T> getResults() {
+ return results;
+ }
+
+ /**
+ * @param results the results to set
+ */
+ public void setResults(Collection<T> results) {
+ this.results = results;
+ }
+
+ /**
+ * @return the conversationHolder
+ */
+ public ConversationHolder getConversationHolder() {
+ return conversationHolder;
+ }
+
+ @Override
+ public abstract int hashCode();
+
+ @Override
+ public abstract boolean equals(Object obj);
+}
--- /dev/null
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
+
+import org.eclipse.core.commands.AbstractHandler;
+import org.eclipse.core.commands.ExecutionEvent;
+import org.eclipse.core.commands.ExecutionException;
+import org.eclipse.jface.viewers.ISelection;
+import org.eclipse.jface.viewers.StructuredSelection;
+import org.eclipse.ui.IWorkbenchPart;
+import org.eclipse.ui.IWorkbenchWindow;
+import org.eclipse.ui.PlatformUI;
+
+import eu.etaxonomy.cdm.api.service.IOccurrenceService;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
+import eu.etaxonomy.taxeditor.model.AbstractUtility;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+
+public class SaveSpecimenCommand extends AbstractHandler {
+
+ /* (non-Javadoc)
+ * @see org.eclipse.core.commands.IHandler#execute(org.eclipse.core.commands.ExecutionEvent)
+ */
+ @Override
+ public Object execute(ExecutionEvent event) throws ExecutionException {
+ final IWorkbenchWindow window = PlatformUI.getWorkbench().getActiveWorkbenchWindow();
+ final ISelection selection = window.getActivePage().getSelection();
+ if(selection instanceof StructuredSelection){
+ StructuredSelection structuredSelection = (StructuredSelection)selection;
+ Object firstElement = structuredSelection.getFirstElement();
+ if(firstElement instanceof SpecimenOrObservationBase){
+ IWorkbenchPart activePart = AbstractUtility.getActivePart();
+ if(activePart instanceof DataImportEditor){
+ DataImportEditor dataImportEditor = (DataImportEditor)activePart;
+ CdmStore.getService(IOccurrenceService.class).saveOrUpdate((SpecimenOrObservationBase) firstElement);
+ dataImportEditor.getConversationHolder().commit(true);
+ }
+ }
+ }
+ return null;
+ }
+
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2013 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
+
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
+
+/**
+ * @author pplitzner
+ * @date 20.09.2013
+ *
+ */
+public class SpecimenImportEditor extends DataImportEditor<SpecimenOrObservationBase> {
+
+ public static final String ID = "eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenImportEditor";
+
+ /**
+ *
+ */
+ public SpecimenImportEditor() {
+ super();
+ }
+}
--- /dev/null
+// $Id$
+/**
+* Copyright (C) 2014 EDIT
+* European Distributed Institute of Taxonomy
+* http://www.e-taxonomy.eu
+*
+* The contents of this file are subject to the Mozilla Public License Version 1.1
+* See LICENSE.TXT at the top of this package for the full license terms.
+*/
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
+
+import java.util.ArrayList;
+import java.util.Collection;
+
+import org.eclipse.swt.widgets.Display;
+
+import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
+import eu.etaxonomy.cdm.ext.biocase.BioCaseQuery;
+import eu.etaxonomy.cdm.model.location.NamedArea;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
+import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
+import eu.etaxonomy.taxeditor.store.CdmStore;
+
+/**
+ * @author pplitzner
+ * @date 25.02.2014
+ *
+ */
+public class SpecimenImportEditorInput extends DataImportEditorInput<SpecimenOrObservationBase> {
+
+ private final BioCaseQuery query;
+
+ /**
+ * @param results
+ */
+ public SpecimenImportEditorInput(BioCaseQuery query) {
+ super();
+ this.query = query;
+ }
+
+ public void query(){
+ String errorMessage = "Could not execute query " + SpecimenImportEditorInput.this.query;
+
+ Collection<SpecimenOrObservationBase> results = new ArrayList<SpecimenOrObservationBase>();
+ DerivedUnitFacade unit1 = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
+// newInstance.setTitleCache("Test Specimen", true);
+ unit1.setCollectingMethod("Collected from the ground");
+ unit1.setAccessionNumber("ACC-12345");
+ unit1.setLocality("locality");
+ unit1.setCountry(NamedArea.EUROPE());
+
+ DerivedUnitFacade unit2 = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
+ unit2.setTitleCache("Test Specimen 2", false);
+ unit2.setCollectingMethod("Collected from the ground");
+ unit2.setAccessionNumber("ACC-67890");
+ unit2.setLocality("solid ground close to car park");
+ unit2.setCountry(NamedArea.ASIA_TEMPERATE());
+
+ DerivedUnitFacade unit3 = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.PreservedSpecimen);
+ unit3.setTitleCache("Test Specimen 3", false);
+ unit3.setCollectingMethod("Collected from the air");
+ unit3.setAccessionNumber("ACC-999");
+ unit3.setLocality("thin air");
+ unit3.setCountry(NamedArea.SOUTHERNOCEAN());
+
+ results.add(unit1.innerDerivedUnit());
+ results.add(unit2.innerDerivedUnit());
+ results.add(unit3.innerDerivedUnit());
+ results.add(unit1.innerDerivedUnit());
+ setResults(results);
+// try {
+// InputStream resultStream = new BioCaseQueryServiceWrapper().query(DataImportEditorInput.this.query);
+// Abcd206ImportConfigurator configurator = Abcd206ImportConfigurator.NewInstance(resultStream, null, false);
+// TransientCdmRepository repo =
+// new TransientCdmRepository(CdmStore.getCurrentApplicationConfiguration());
+// configurator.setCdmAppController(repo);
+//
+// CdmDefaultImport<Abcd206ImportConfigurator> importer = new CdmDefaultImport<Abcd206ImportConfigurator>();
+// importer.invoke(configurator);
+// results = repo.getUnits();
+// } catch (ClientProtocolException e) {
+// logger.error(errorMessage, e);
+// } catch (IOException e) {
+// logger.error(errorMessage, e);
+// } catch (URISyntaxException e) {
+// logger.error(errorMessage, e);
+// }
+
+ Display.getDefault().asyncExec(new Runnable() {
+
+ @Override
+ public void run() {
+ CdmStore.getContextManager().notifyContextRefresh();
+ }
+ });
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.IEditorInput#getName()
+ */
+ @Override
+ public String getName() {
+ return query.toString();
+ }
+
+ /* (non-Javadoc)
+ * @see org.eclipse.ui.IEditorInput#getToolTipText()
+ */
+ @Override
+ public String getToolTipText() {
+ return query.toString();
+ }
+
+ /* (non-Javadoc)
+ * @see java.lang.Object#hashCode()
+ */
+ @Override
+ public int hashCode() {
+ final int prime = 31;
+ int result = 1;
+ result = prime * result + ((query == null) ? 0 : query.hashCode());
+ return result;
+ }
+
+ /* (non-Javadoc)
+ * @see java.lang.Object#equals(java.lang.Object)
+ */
+ @Override
+ public boolean equals(Object obj) {
+ if (this == obj) {
+ return true;
+ }
+ if (obj == null) {
+ return false;
+ }
+ if (getClass() != obj.getClass()) {
+ return false;
+ }
+ SpecimenImportEditorInput other = (SpecimenImportEditorInput) obj;
+ if (query == null) {
+ if (other.query != null) {
+ return false;
+ }
+ } else if (!query.equals(other.query)) {
+ return false;
+ }
+ return true;
+ }
+}
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.wizard;
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
import org.apache.log4j.Logger;
import org.eclipse.core.runtime.IProgressMonitor;
import org.eclipse.ui.PlatformUI;
import eu.etaxonomy.cdm.ext.biocase.BioCaseQuery;
-import eu.etaxonomy.taxeditor.dataimport.DataImportEditor;
-import eu.etaxonomy.taxeditor.dataimport.DerivedUnitEditorInput;
import eu.etaxonomy.taxeditor.store.CdmStore;
/**
final IWorkbenchPage page = PlatformUI.getWorkbench().getActiveWorkbenchWindow().getActivePage();
query = searchPage.getQuery();
- final DerivedUnitEditorInput input = new DerivedUnitEditorInput(query);
+ final SpecimenImportEditorInput input = new SpecimenImportEditorInput(query);
Job queryJob = new Job("Query Biocase") {
@Override
};
queryJob.schedule();
try {
- page.openEditor(input, DataImportEditor.ID, true);
+ page.openEditor(input, SpecimenImportEditor.ID, true);
} catch ( PartInitException e ) {
//Put your exception handler here if you wish to
}
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.wizard;
+package eu.etaxonomy.taxeditor.editor.view.dataimport;
import org.eclipse.jface.wizard.WizardPage;
import org.eclipse.swt.widgets.Composite;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.util.Collection;
import java.util.List;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.util.Collection;
*/
@Override
public ICollectionService getCollectionService() {
- return new TransientCollectionService(defaultApplicationConfiguration.getCollectionService());
+ return defaultApplicationConfiguration.getCollectionService();
+// return new TransientCollectionService(defaultApplicationConfiguration.getCollectionService());
}
/**
@Override
public ICommonService getCommonService() {
return defaultApplicationConfiguration.getCommonService();
+// return new TransientCommonService(defaultApplicationConfiguration.getCommonService());
}
/**
@Override
public IDatabaseService getDatabaseService() {
return defaultApplicationConfiguration.getDatabaseService();
+// return new TransientDatabaseService(defaultApplicationConfiguration.getDatabaseService());
}
/**
@Override
public IFeatureNodeService getFeatureNodeService() {
return defaultApplicationConfiguration.getFeatureNodeService();
+// return new TransientFeatureNodeService(defaultApplicationConfiguration.getFeatureNodeService());
}
/**
@Override
public IFeatureTreeService getFeatureTreeService() {
return defaultApplicationConfiguration.getFeatureTreeService();
+// return new TransientFeatureTreeService(defaultApplicationConfiguration.getFeatureTreeService());
}
/**
@Override
public IGrantedAuthorityService getGrantedAuthorityService() {
return defaultApplicationConfiguration.getGrantedAuthorityService();
+// return new TransientGrantedAuthorityService(defaultApplicationConfiguration.getGrantedAuthorityService());
}
/**
@Override
public IGroupService getGroupService() {
return defaultApplicationConfiguration.getGroupService();
+// return new TransientGroupService(defaultApplicationConfiguration.getGroupService());
}
/**
@Override
public IIdentificationKeyService getIdentificationKeyService() {
return defaultApplicationConfiguration.getIdentificationKeyService();
+// return new TransientIdentificationService(defaultApplicationConfiguration.getIdentificationKeyService());
}
/**
@Override
public ILocationService getLocationService() {
return defaultApplicationConfiguration.getLocationService();
+// return new TransientLocationService(defaultApplicationConfiguration.getLocationService());
}
/**
@Override
public IService<CdmBase> getMainService() {
return defaultApplicationConfiguration.getMainService();
+// return new TransientMainService(defaultApplicationConfiguration.getMainService());
}
/**
@Override
public IMediaService getMediaService() {
return defaultApplicationConfiguration.getMediaService();
+// return new TransientMediaService(defaultApplicationConfiguration.getMediaService());
}
/**
@Override
public IPolytomousKeyNodeService getPolytomousKeyNodeService() {
return defaultApplicationConfiguration.getPolytomousKeyNodeService();
+// return new TransientPolytomousKeyNodeService(defaultApplicationConfiguration.getPolytomousKeyNodeService());
}
/**
@Override
public IPolytomousKeyService getPolytomousKeyService() {
return defaultApplicationConfiguration.getPolytomousKeyService();
+// return new TransientPolytomousKeyService(defaultApplicationConfiguration.getPolytomousKeyService());
}
/**
@Override
public ITaxonNodeService getTaxonNodeService() {
return defaultApplicationConfiguration.getTaxonNodeService();
+// return new TransientTaxonNodeService(defaultApplicationConfiguration.getTaxonNodeService());
}
/**
@Override
public IUserService getUserService() {
return defaultApplicationConfiguration.getUserService();
+// return new TransientUserService(defaultApplicationConfiguration.getUserService());
}
/**
@Override
public IVocabularyService getVocabularyService() {
return defaultApplicationConfiguration.getVocabularyService();
+// return new TransientVocabularyService(defaultApplicationConfiguration.getVocabularyService());
}
/**
@Override
public IWorkingSetService getWorkingSetService() {
return defaultApplicationConfiguration.getWorkingSetService();
+// return new TransientWorkingSetService(defaultApplicationConfiguration.getWorkingSetService());
}
/**
public TransactionStatus startTransaction(Boolean arg0) {
return defaultApplicationConfiguration.startTransaction(arg0);
}
-
-
-
}
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.util.Collection;
import java.util.List;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.util.Collection;
import java.util.List;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.io.IOException;
import java.util.Collection;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.io.IOException;
import java.util.Collection;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.util.Collection;
import java.util.List;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.io.IOException;
import java.util.Collection;
* The contents of this file are subject to the Mozilla Public License Version 1.1
* See LICENSE.TXT at the top of this package for the full license terms.
*/
-package eu.etaxonomy.taxeditor.dataimport.transientServices;
+package eu.etaxonomy.taxeditor.editor.view.dataimport.transientServices;
import java.net.URI;
import java.util.Collection;