Cherian Mathew [Wed, 12 Feb 2014 11:04:35 +0000 (11:04 +0000)]
remotingApplicationContext : removed load time weaving config
AbstractPersistentCollection : reverting to original code
CdmApplicationRemoteController : adding missing method call
Cherian Mathew [Wed, 12 Feb 2014 09:10:08 +0000 (09:10 +0000)]
merge from trunk
Cherian Mathew [Wed, 12 Feb 2014 09:09:16 +0000 (09:09 +0000)]
RemoteLazyLoadingTest : cosmetic changes
CdmApplicationRemoteController, CdmApplicationRemoteConfiguration : refactoring
Patric Plitzner [Wed, 12 Feb 2014 08:36:42 +0000 (08:36 +0000)]
- added combo controller to combo field in DerivateSearchView
Andreas Kohlbecker [Tue, 11 Feb 2014 16:20:34 +0000 (16:20 +0000)]
solving #4056 (taxeditor responds with nicer dialogue in case a user executes a prohibited operation)
Cherian Mathew [Tue, 11 Feb 2014 15:30:51 +0000 (15:30 +0000)]
merge from trunk
Cherian Mathew [Tue, 11 Feb 2014 15:30:10 +0000 (15:30 +0000)]
added possibility to switch to remoting
Cherian Mathew [Tue, 11 Feb 2014 15:28:41 +0000 (15:28 +0000)]
remotingApplicationContext : removing configuration bean declaration
CdmApplicationRemoteController : removed call to init configuration bean via application context
CdmApplicationRemoteDefaultConfiguration : refactoring code to cplit configuration into default / remote
Patric Plitzner [Tue, 11 Feb 2014 12:15:16 +0000 (12:15 +0000)]
- additional fix for #3589 and #3588
Cherian Mathew [Tue, 11 Feb 2014 11:23:37 +0000 (11:23 +0000)]
config file to set target cdmserver
Cherian Mathew [Tue, 11 Feb 2014 11:21:45 +0000 (11:21 +0000)]
Adding new and modifying existing classes / resources for remoting.
- Added aspectj library dependencies : eu.etaxonomy.taxeditor.cdmlib/META-INF/MANIFEST.MF, eu.etaxonomy.taxeditor.cdmlib/META-INF/aop.xml, eu.etaxonomy.taxeditor.cdmlib/pom.xml, eu.etaxonomy.taxeditor.cdmlib/lib/aspectjrt-1.7.1-sources.jar, eu.etaxonomy.taxeditor.cdmlib/lib/aspectjweaver-1.7.1-sources.jar
- Added aspects to initialize cdm entites / collections remotely : eu.etaxonomy.taxeditor.cdmlib/META-INF/aop.xml, eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/api/lazyloading/CdmLazyLoader.java
- Hibernate classes to be aspect woven (need these explicitly on client-side to set serial uuid) : eu.etaxonomy.taxeditor.cdmlib/src/main/java/org/hibernate/proxy/AbstractLazyInitializer.java, eu.etaxonomy.taxeditor.cdmlib/src/main/java/org/hibernate/collection/internal/AbstractPersistentCollection.java
- remote spring application context config files : eu.etaxonomy.taxeditor.cdmlib/src/main/resources/eu/etaxonomy/cdm/remotingApplicationContext.xml, remoting_persistence_security.xml, httpInvokerServiceClients.xml, remoting_services_security.xml
- Remote application controller which uses the remote spring application context : eu.etaxonomy.taxeditor.cdmlib/src/main/java/eu/etaxonomy/cdm/remote/api/application/ICdmApplicationRemoteConfiguration.java,CdmApplicationRemoteController.java, CdmApplicationRemoteDefaultConfiguration.java
- Initial tests for remoting : eu.etaxonomy.taxeditor.cdmlib/src/test/java/eu/etaxonomy/taxeditor/remoting/RemoteLazyLoadingTest.java, CdmApplicationRemoteControllerTest.java
Patric Plitzner [Tue, 11 Feb 2014 08:44:56 +0000 (08:44 +0000)]
- separated GUI from control elements for term combo widget (part of #3627)
Andreas Kohlbecker [Mon, 10 Feb 2014 18:22:57 +0000 (18:22 +0000)]
part 2 of preliminary solution to #4053 (Transient field User.authorities not refreshed on reloading entity)
Andreas Kohlbecker [Mon, 10 Feb 2014 13:59:16 +0000 (13:59 +0000)]
solving #4013 (GrantedAuthority: Humane label of TaxonNode authorities)
Andreas Müller [Fri, 7 Feb 2014 11:55:09 +0000 (11:55 +0000)]
move elevation back to first page #4037
Andreas Kohlbecker [Thu, 6 Feb 2014 14:18:20 +0000 (14:18 +0000)]
part 2 of fixing #2414 (Group updating doesn't work) by committing and restarting the transaction in the conversation
Andreas Kohlbecker [Thu, 6 Feb 2014 14:16:37 +0000 (14:16 +0000)]
more log.debug statements
Katja Luther [Thu, 6 Feb 2014 12:47:28 +0000 (12:47 +0000)]
Katja Luther [Thu, 6 Feb 2014 12:45:47 +0000 (12:45 +0000)]
adding the operation and handler files
Katja Luther [Thu, 6 Feb 2014 11:58:53 +0000 (11:58 +0000)]
move the change accepted to Synonym Operation to taxon navigator.
Andreas Müller [Wed, 5 Feb 2014 13:21:22 +0000 (13:21 +0000)]
changing label for sibling and child Polytomous Key, also change menu order #4029
Andreas Müller [Tue, 4 Feb 2014 17:20:08 +0000 (17:20 +0000)]
water -> watersurface #4031
Andreas Müller [Tue, 4 Feb 2014 15:14:08 +0000 (15:14 +0000)]
change statement to state(ment) #3864
Andreas Kohlbecker [Tue, 4 Feb 2014 12:25:55 +0000 (12:25 +0000)]
adding faq entry on crashes in KDE and other ubunu desktop environments
Andreas Kohlbecker [Tue, 4 Feb 2014 12:25:51 +0000 (12:25 +0000)]
add .gitignore
Andreas Kohlbecker [Mon, 3 Feb 2014 17:07:57 +0000 (17:07 +0000)]
solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker [Mon, 3 Feb 2014 17:07:25 +0000 (17:07 +0000)]
solving #4011 (disallow changing publish flag for users with insuffcient rights) for TaxonBase
Andreas Kohlbecker [Mon, 3 Feb 2014 15:52:39 +0000 (15:52 +0000)]
adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker [Mon, 3 Feb 2014 15:51:29 +0000 (15:51 +0000)]
adapting to new use new ICdmPermissionEvaluator
Andreas Kohlbecker [Mon, 3 Feb 2014 13:59:44 +0000 (13:59 +0000)]
fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946 - comment
Andreas Kohlbecker [Mon, 3 Feb 2014 13:54:33 +0000 (13:54 +0000)]
fixing #4012 (ClassCastException in User and Group Bulk Editor) by revering one line of commit r19946
Cherian Mathew [Thu, 30 Jan 2014 09:19:34 +0000 (09:19 +0000)]
added exclusion filter for portal controllers
Cherian Mathew [Wed, 29 Jan 2014 16:39:37 +0000 (16:39 +0000)]
excluding vaading packages from component scan
Patric Plitzner [Wed, 29 Jan 2014 14:41:46 +0000 (14:41 +0000)]
- added persistence sources
Patric Plitzner [Wed, 29 Jan 2014 13:43:27 +0000 (13:43 +0000)]
- replaced togglable title cache field with text label to enter polytomous key label (fixes #3952)
Andreas Kohlbecker [Wed, 29 Jan 2014 13:10:44 +0000 (13:10 +0000)]
editor part done for #4006 (remove general map parameters from distribution and occurrence map service methods)
Andreas Kohlbecker [Wed, 29 Jan 2014 12:10:27 +0000 (12:10 +0000)]
preparing for removal of params - #4006 (remove general map parameters from distribution and occurrence map service methods)
Patric Plitzner [Wed, 29 Jan 2014 10:45:29 +0000 (10:45 +0000)]
- added *.xlsx and *.* to SpecimenCdmExcelImport file chooser (fixes #3971)
Patric Plitzner [Wed, 29 Jan 2014 07:58:59 +0000 (07:58 +0000)]
- implemented SynonymRelationship detail section for the DetailsView of Synonyms (#3588 #3589)
Patric Plitzner [Tue, 28 Jan 2014 13:20:22 +0000 (13:20 +0000)]
- removed switch for specific-details views
Patric Plitzner [Tue, 28 Jan 2014 12:59:52 +0000 (12:59 +0000)]
- removed remaining occurences of "campanula"
Patric Plitzner [Tue, 28 Jan 2014 12:30:33 +0000 (12:30 +0000)]
- removing campanula package completely 3/3
Patric Plitzner [Tue, 28 Jan 2014 12:29:49 +0000 (12:29 +0000)]
- removing campanula package completely 1/3
Patric Plitzner [Tue, 28 Jan 2014 12:28:08 +0000 (12:28 +0000)]
- moved ICdmFormElement to ui.element
Patric Plitzner [Tue, 28 Jan 2014 12:19:02 +0000 (12:19 +0000)]
- cleaned up package structure
- removed campanula package
Patric Plitzner [Tue, 28 Jan 2014 12:17:38 +0000 (12:17 +0000)]
- increased version number
- added sources
Patric Plitzner [Tue, 28 Jan 2014 11:48:01 +0000 (11:48 +0000)]
- changed static root element (FieldUnit) of DerivateView to the topmost derivate there is
Patric Plitzner [Tue, 28 Jan 2014 08:36:41 +0000 (08:36 +0000)]
- commented not-yet-existing SynonymRelationShip DetailsView classes
Patric Plitzner [Tue, 28 Jan 2014 08:31:00 +0000 (08:31 +0000)]
- added MediaSpecimen DetailsView
- added empty element if there is no details view available
edit-jenkins [Fri, 24 Jan 2014 12:59:04 +0000 (12:59 +0000)]
Updated version in config files to 3.3.1-SNAPSHOT
Patric Plitzner [Wed, 22 Jan 2014 15:28:36 +0000 (15:28 +0000)]
- removed specific source code path
Patric Plitzner [Wed, 22 Jan 2014 09:57:31 +0000 (09:57 +0000)]
merged campanula branch to trunk. Main features are: BioCase Query via Imports, Derivate Search View, Derivate (Hierarchy) View, Derivate perspective, type-specific DetailsViews for specimens
Patric Plitzner [Tue, 21 Jan 2014 15:03:58 +0000 (15:03 +0000)]
merge-update from trunk
Patric Plitzner [Tue, 21 Jan 2014 14:52:08 +0000 (14:52 +0000)]
- added AbstractUnboundEntityCollectionSection which allows adding elements to collection sections without adding them to the model object
Patric Plitzner [Tue, 21 Jan 2014 08:34:38 +0000 (08:34 +0000)]
merge-update from trunk
Patric Plitzner [Tue, 21 Jan 2014 08:33:00 +0000 (08:33 +0000)]
- added cdmlib sources
Patric Plitzner [Tue, 21 Jan 2014 08:30:28 +0000 (08:30 +0000)]
- partly fixed sequence reference collection section
Patric Plitzner [Mon, 20 Jan 2014 14:57:35 +0000 (14:57 +0000)]
- added java package for different occurrence/specimen types
- moved "show field unit" option to "Bulk Editor" preference page
- added preference to show only type-specific details views for specimens
Patric Plitzner [Mon, 20 Jan 2014 08:58:58 +0000 (08:58 +0000)]
merge-update fixes
Patric Plitzner [Mon, 20 Jan 2014 08:51:06 +0000 (08:51 +0000)]
merge-update from trunk
Patric Plitzner [Mon, 20 Jan 2014 08:12:36 +0000 (08:12 +0000)]
- added separate section for primer and cloning
- removed "null" message in data source conversion dialog
edit-jenkins [Thu, 16 Jan 2014 09:14:35 +0000 (09:14 +0000)]
Updated version in config files to 3.3.0
Patric Plitzner [Wed, 15 Jan 2014 10:54:06 +0000 (10:54 +0000)]
- updated "update datasource" message popup
Patric Plitzner [Wed, 15 Jan 2014 08:07:31 +0000 (08:07 +0000)]
- updated "update datasource" message popup
Andreas Müller [Tue, 14 Jan 2014 22:18:53 +0000 (22:18 +0000)]
fix missing publish flag for synonyms
Patric Plitzner [Tue, 14 Jan 2014 16:15:13 +0000 (16:15 +0000)]
merge-update from trunk
Patric Plitzner [Tue, 14 Jan 2014 16:01:08 +0000 (16:01 +0000)]
fix for #3557
- reactivated details view for taxon relationships
- added doubtful flag
Patric Plitzner [Tue, 14 Jan 2014 14:34:29 +0000 (14:34 +0000)]
- also allow *.xlsx and *.* for Excel import (fixes #3657)
Patric Plitzner [Tue, 14 Jan 2014 14:06:51 +0000 (14:06 +0000)]
- set recordBasis according to selecting in context menu (fixes #3753)
Andreas Müller [Tue, 14 Jan 2014 12:31:07 +0000 (12:31 +0000)]
change ICBN to ICNAFP in manual #3745
Cherian Mathew [Tue, 14 Jan 2014 11:45:03 +0000 (11:45 +0000)]
workaround for release 3.3.0 related to ticket 3828 forcing SHOULD_CONNECT_AT_STARTUP to always be false.
Patric Plitzner [Tue, 14 Jan 2014 07:36:35 +0000 (07:36 +0000)]
- fixed potential NPEs in Amplification DetailsView
Patric Plitzner [Mon, 13 Jan 2014 07:53:47 +0000 (07:53 +0000)]
- added reference collection section to Sequence DetailsView
- implemented handleEvent() for some DetailsViews
Patric Plitzner [Wed, 8 Jan 2014 16:32:50 +0000 (16:32 +0000)]
merge-update from trunk
Patric Plitzner [Wed, 8 Jan 2014 16:13:13 +0000 (16:13 +0000)]
- added startNumber to PolytomousKey DetailsView (fixes #3563)
Patric Plitzner [Wed, 8 Jan 2014 15:33:51 +0000 (15:33 +0000)]
- added idInVocabulary to DefinedTerm DetailsView (#3542)
Patric Plitzner [Wed, 8 Jan 2014 14:08:06 +0000 (14:08 +0000)]
added hardcoded base layer "earth" (#3941)
Patric Plitzner [Wed, 8 Jan 2014 14:07:31 +0000 (14:07 +0000)]
changed tooltip to "factual data"
Patric Plitzner [Wed, 8 Jan 2014 10:02:27 +0000 (10:02 +0000)]
- changed default map service access point (fixes #3941)
Patric Plitzner [Tue, 7 Jan 2014 08:00:15 +0000 (08:00 +0000)]
- added elements for Sequence/Amplification/SingleRead DetailsView
Patric Plitzner [Mon, 6 Jan 2014 16:49:12 +0000 (16:49 +0000)]
- added reference selection to Sequence DetailsView
Patric Plitzner [Mon, 6 Jan 2014 14:36:01 +0000 (14:36 +0000)]
- added element for Sequence DetailsView
Patric Plitzner [Mon, 6 Jan 2014 12:36:15 +0000 (12:36 +0000)]
- added support for creating and viewing SingleReads in DerivateView
- added DetailsViews for SingleReads
Patric Plitzner [Mon, 6 Jan 2014 09:56:30 +0000 (09:56 +0000)]
merge-update from trunk
Patric Plitzner [Mon, 6 Jan 2014 09:50:48 +0000 (09:50 +0000)]
- added Amplification and Sequence to DerivateView
- added context menu entry for the creation of both
- added DetailsViews for both
Patric Plitzner [Wed, 18 Dec 2013 15:37:34 +0000 (15:37 +0000)]
- added Amplifications and Seuqences (consensus) to derivate hierarchy (DerivateView)
Patric Plitzner [Wed, 18 Dec 2013 08:53:17 +0000 (08:53 +0000)]
- adapted to trunk-merge changes
Patric Plitzner [Wed, 18 Dec 2013 08:49:10 +0000 (08:49 +0000)]
merge-update from trunk
Andreas Kohlbecker [Wed, 18 Dec 2013 08:44:14 +0000 (08:44 +0000)]
adapting to method signature change
Patric Plitzner [Wed, 18 Dec 2013 07:51:37 +0000 (07:51 +0000)]
- added amplification section to DNA DetailsView
Patric Plitzner [Tue, 17 Dec 2013 15:06:25 +0000 (15:06 +0000)]
- added DetailsView for PreservedSpecimen which directly work with DerivedUnit instead of DerivedUnitFacade (new classes work in parallel to the ones using DerivedUnitFacades and start with "PreservedSpecimen")
Patric Plitzner [Tue, 17 Dec 2013 08:03:58 +0000 (08:03 +0000)]
- added specific DetailsViews that are not based on DerivedUnitFacade for DNA and specimens
Patric Plitzner [Tue, 17 Dec 2013 08:03:13 +0000 (08:03 +0000)]
- added preliminary method for getting specimen by type/record basis (needs enhancement with direct SQL queries)
Patric Plitzner [Mon, 16 Dec 2013 14:07:52 +0000 (14:07 +0000)]
- added a flag to force also searching for FieldUnits when searching occurrences
Patric Plitzner [Mon, 16 Dec 2013 09:39:25 +0000 (09:39 +0000)]
- updated DerivateSearchView and DerivateView icon
Patric Plitzner [Mon, 16 Dec 2013 08:57:16 +0000 (08:57 +0000)]
- updated DerivateSearchView icon
Patric Plitzner [Mon, 16 Dec 2013 07:54:13 +0000 (07:54 +0000)]
- added empty DetailViews for all derivate types
Patric Plitzner [Mon, 16 Dec 2013 07:53:40 +0000 (07:53 +0000)]
- added derivate types to DerivateSearchView combo
Patric Plitzner [Mon, 16 Dec 2013 07:52:56 +0000 (07:52 +0000)]
- fixed bug when creating another DescriptionElement
Cherian Mathew [Thu, 12 Dec 2013 14:45:13 +0000 (14:45 +0000)]
TaxonEditorInput.java : added entire property paths list to taxon service call
spring-security-remoting-3.1.3.RELEASE.jar : jar for http invoker remoting
build.properties, .classpath, MANIFEST.MF : updates for new jar
CdmStore.java, CdmStoreConnector.java : used new CdmApplicationRemoteController
editorApplicationContext.xml : uses new remotingApplicationContext