3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.EnumSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
27 import eu
.etaxonomy
.cdm
.api
.service
.ITaxonService
;
28 import eu
.etaxonomy
.cdm
.api
.service
.TaxaAndNamesSearchMode
;
29 import eu
.etaxonomy
.cdm
.api
.service
.config
.IFindTaxaAndNamesConfigurator
;
30 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.MatchingTaxonConfigurator
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.SynonymDeletionConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.TaxonDeletionConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.exception
.DataChangeNoRollbackException
;
35 import eu
.etaxonomy
.cdm
.api
.service
.exception
.HomotypicalGroupChangeException
;
36 import eu
.etaxonomy
.cdm
.api
.service
.exception
.ReferencedObjectUndeletableException
;
37 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
38 import eu
.etaxonomy
.cdm
.api
.service
.search
.LuceneMultiSearchException
;
39 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
40 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
41 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
42 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
43 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
44 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableEntity
;
45 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
46 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
47 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
48 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
49 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
50 import eu
.etaxonomy
.cdm
.model
.common
.OrderedTermVocabulary
;
51 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
;
52 import eu
.etaxonomy
.cdm
.model
.common
.RelationshipBase
.Direction
;
53 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
54 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionElementBase
;
55 import eu
.etaxonomy
.cdm
.model
.description
.Feature
;
56 import eu
.etaxonomy
.cdm
.model
.description
.PresenceAbsenceTermBase
;
57 import eu
.etaxonomy
.cdm
.model
.location
.NamedArea
;
58 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
59 import eu
.etaxonomy
.cdm
.model
.media
.MediaRepresentation
;
60 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
61 import eu
.etaxonomy
.cdm
.model
.name
.HomotypicalGroup
;
62 import eu
.etaxonomy
.cdm
.model
.name
.Rank
;
63 import eu
.etaxonomy
.cdm
.model
.name
.TaxonNameBase
;
64 import eu
.etaxonomy
.cdm
.model
.reference
.Reference
;
65 import eu
.etaxonomy
.cdm
.model
.taxon
.Classification
;
66 import eu
.etaxonomy
.cdm
.model
.taxon
.Synonym
;
67 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationship
;
68 import eu
.etaxonomy
.cdm
.model
.taxon
.SynonymRelationshipType
;
69 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
70 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
71 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationship
;
72 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonRelationshipType
;
73 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
74 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
75 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
76 import eu
.etaxonomy
.cdm
.persistence
.fetch
.CdmFetch
;
77 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
78 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
79 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
80 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
81 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
82 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
89 public class TransientTaxonService
implements ITaxonService
{
91 private final ITaxonService defaultTaxonService
;
94 * @param defaultTaxonService
96 public TransientTaxonService(ITaxonService defaultTaxonService
) {
97 this.defaultTaxonService
= defaultTaxonService
;
105 * @param propertyPaths
107 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
110 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(TaxonBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
111 return defaultTaxonService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
115 * @param annotatedObj
120 * @param propertyPaths
122 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
125 public Pager
<Annotation
> getAnnotations(TaxonBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
126 return defaultTaxonService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
131 * @see eu.etaxonomy.cdm.api.service.IService#clear()
134 public void clear() {
135 defaultTaxonService
.clear();
141 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
144 public void lock(TaxonBase t
, LockMode lockMode
) {
145 defaultTaxonService
.lock(t
, lockMode
);
151 * @param propertyPaths
152 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
155 public void refresh(TaxonBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
156 defaultTaxonService
.refresh(t
, lockMode
, propertyPaths
);
161 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
164 public void updateTitleCache() {
165 defaultTaxonService
.updateTitleCache();
171 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
174 public AuditEventRecord
<TaxonBase
> getNextAuditEvent(TaxonBase t
) {
175 return defaultTaxonService
.getNextAuditEvent(t
);
179 * @param annotatableEntity
184 * @param propertyPaths
186 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
189 public Pager
<Marker
> getMarkers(TaxonBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
190 return defaultTaxonService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
196 * @param cacheStrategy
198 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
201 public void updateTitleCache(Class
<?
extends TaxonBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<TaxonBase
> cacheStrategy
, IProgressMonitor monitor
) {
202 defaultTaxonService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
208 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
211 public AuditEventRecord
<TaxonBase
> getPreviousAuditEvent(TaxonBase t
) {
212 return defaultTaxonService
.getPreviousAuditEvent(t
);
218 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
221 public int count(Class
<?
extends TaxonBase
> clazz
) {
222 return defaultTaxonService
.count(clazz
);
233 * @param propertyPaths
235 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
238 public Pager
<AuditEventRecord
<TaxonBase
>> pageAuditEvents(Class
<?
extends TaxonBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
239 return defaultTaxonService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
245 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
248 public TaxonBase
find(LSID lsid
) {
249 return defaultTaxonService
.find(lsid
);
253 * @param persistentObject
255 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
258 public UUID
delete(TaxonBase persistentObject
) throws ReferencedObjectUndeletableException
{
259 return defaultTaxonService
.delete(persistentObject
);
267 * @param propertyPaths
269 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
272 public List
<Object
[]> groupMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
273 return defaultTaxonService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
279 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
282 public boolean exists(UUID uuid
) {
283 return defaultTaxonService
.exists(uuid
);
290 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllSynonyms(int, int)
293 public List
<Synonym
> getAllSynonyms(int limit
, int start
) {
294 return defaultTaxonService
.getAllSynonyms(limit
, start
);
301 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
304 public TaxonBase
replace(TaxonBase x
, TaxonBase y
) {
305 return defaultTaxonService
.replace(x
, y
);
312 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllTaxa(int, int)
315 public List
<Taxon
> getAllTaxa(int limit
, int start
) {
316 return defaultTaxonService
.getAllTaxa(limit
, start
);
322 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
325 public List
<TaxonBase
> find(Set
<UUID
> uuidSet
) {
326 return defaultTaxonService
.find(uuidSet
);
333 * @param propertyPaths
335 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
338 public Pager
<IdentifiableSource
> getSources(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
339 return defaultTaxonService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
345 * @param onlyWithChildren
348 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.reference.Reference, eu.etaxonomy.cdm.persistence.fetch.CdmFetch, boolean)
352 public List
<Taxon
> getRootTaxa(Reference sec
, CdmFetch cdmFetch
, boolean onlyWithChildren
) {
353 return defaultTaxonService
.getRootTaxa(sec
, cdmFetch
, onlyWithChildren
);
359 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
362 public TaxonBase
find(UUID uuid
) {
363 return defaultTaxonService
.find(uuid
);
369 * @param onlyWithChildren
370 * @param withMisapplications
371 * @param propertyPaths
374 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getRootTaxa(eu.etaxonomy.cdm.model.name.Rank, eu.etaxonomy.cdm.model.reference.Reference, boolean, boolean, java.util.List)
378 public List
<Taxon
> getRootTaxa(Rank rank
, Reference sec
, boolean onlyWithChildren
, boolean withMisapplications
, List
<String
> propertyPaths
) {
379 return defaultTaxonService
.getRootTaxa(rank
, sec
, onlyWithChildren
, withMisapplications
, propertyPaths
);
385 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
388 public TaxonBase
find(int id
) {
389 return defaultTaxonService
.find(id
);
396 * @param propertyPaths
398 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
401 public Pager
<Rights
> getRights(TaxonBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
402 return defaultTaxonService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
409 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
412 public int countMarkers(Class
<?
extends TaxonBase
> clazz
, Boolean technical
) {
413 return defaultTaxonService
.countMarkers(clazz
, technical
);
419 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
422 public List
<TaxonBase
> findById(Set
<Integer
> idSet
) {
423 return defaultTaxonService
.findById(idSet
);
431 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
434 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
435 return defaultTaxonService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
440 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
443 public Session
getSession() {
444 return defaultTaxonService
.getSession();
449 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
452 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCache() {
453 return defaultTaxonService
.getUuidAndTitleCache();
461 * @param propertyPaths
463 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
466 public List
<Object
[]> group(Class
<?
extends TaxonBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
467 return defaultTaxonService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
474 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllRelationships(int, int)
477 public List
<RelationshipBase
> getAllRelationships(int limit
, int start
) {
478 return defaultTaxonService
.getAllRelationships(limit
, start
);
489 * @param propertyPaths
491 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
494 public Pager
<TaxonBase
> findByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
495 return defaultTaxonService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
501 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getTaxonRelationshipTypeVocabulary()
505 public OrderedTermVocabulary
<TaxonRelationshipType
> getTaxonRelationshipTypeVocabulary() {
506 return defaultTaxonService
.getTaxonRelationshipTypeVocabulary();
513 * @see eu.etaxonomy.cdm.api.service.ITaxonService#searchTaxaByName(java.lang.String, eu.etaxonomy.cdm.model.reference.Reference)
516 public List
<TaxonBase
> searchTaxaByName(String name
, Reference sec
) {
517 return defaultTaxonService
.searchTaxaByName(name
, sec
);
522 * @param acceptedTaxon
523 * @see eu.etaxonomy.cdm.api.service.ITaxonService#swapSynonymAndAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
526 public void swapSynonymAndAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
) {
527 defaultTaxonService
.swapSynonymAndAcceptedTaxon(synonym
, acceptedTaxon
);
535 * @param propertyPaths
537 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
540 public List
<TaxonBase
> list(Class
<?
extends TaxonBase
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
541 return defaultTaxonService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
545 * @param configurator
547 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
550 public Pager
<TaxonBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
551 return defaultTaxonService
.findByTitle(configurator
);
556 * @param acceptedTaxon
557 * @param deleteSynonym
558 * @param copyCitationInfo
560 * @param microCitation
562 * @throws HomotypicalGroupChangeException
563 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToAcceptedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
566 public Taxon
changeSynonymToAcceptedTaxon(Synonym synonym
, Taxon acceptedTaxon
, boolean deleteSynonym
, boolean copyCitationInfo
, Reference citation
, String microCitation
) throws HomotypicalGroupChangeException
{
567 return defaultTaxonService
.changeSynonymToAcceptedTaxon(synonym
, acceptedTaxon
, deleteSynonym
, copyCitationInfo
, citation
, microCitation
);
576 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
579 public Integer
countByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
580 return defaultTaxonService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
586 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
589 public TaxonBase
load(UUID uuid
) {
590 return defaultTaxonService
.load(uuid
);
595 * @param propertyPaths
597 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
600 public TaxonBase
load(UUID uuid
, List
<String
> propertyPaths
) {
601 return defaultTaxonService
.load(uuid
, propertyPaths
);
605 * @param configurator
607 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
610 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<TaxonBase
> configurator
) {
611 return defaultTaxonService
.countByTitle(configurator
);
615 * @param transientObject
617 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
620 public TaxonBase
merge(TaxonBase transientObject
) {
621 return defaultTaxonService
.merge(transientObject
);
632 * @param propertyPaths
634 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
637 public List
<TaxonBase
> listByTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
638 return defaultTaxonService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
646 * @param propertyPaths
648 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
651 public Pager
<TaxonBase
> page(Class
<?
extends TaxonBase
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
652 return defaultTaxonService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
656 * @param persistentObject
658 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
661 public UUID
refresh(TaxonBase persistentObject
) {
662 return defaultTaxonService
.refresh(persistentObject
);
668 * @param taxonRelationshipType
670 * @param microReference
672 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeSynonymToRelatedTaxon(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String)
675 public Taxon
changeSynonymToRelatedTaxon(Synonym synonym
, Taxon toTaxon
, TaxonRelationshipType taxonRelationshipType
, Reference reference
, String microReference
) {
676 return defaultTaxonService
.changeSynonymToRelatedTaxon(synonym
, toTaxon
, taxonRelationshipType
, reference
, microReference
);
687 * @param propertyPaths
689 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
692 public List
<TaxonBase
> listByReferenceTitle(Class
<?
extends TaxonBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
693 return defaultTaxonService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
701 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
704 public List
<TaxonBase
> rows(String tableName
, int limit
, int start
) {
705 return defaultTaxonService
.rows(tableName
, limit
, start
);
709 * @param newInstances
711 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
714 public Map
<UUID
, TaxonBase
> save(Collection
<TaxonBase
> newInstances
) {
722 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon)
725 public long deleteSynonymRelationships(Synonym syn
, Taxon taxon
) {
726 return defaultTaxonService
.deleteSynonymRelationships(syn
, taxon
);
732 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
735 public UUID
save(TaxonBase newInstance
) {
740 * @param transientObject
742 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
745 public UUID
saveOrUpdate(TaxonBase transientObject
) {
751 * @param newHomotypicalGroup
753 * @param removeFromOtherTaxa
754 * @param setBasionymRelationIfApplicable
755 * @see eu.etaxonomy.cdm.api.service.ITaxonService#changeHomotypicalGroupOfSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.name.HomotypicalGroup, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, boolean)
758 public void changeHomotypicalGroupOfSynonym(Synonym synonym
, HomotypicalGroup newHomotypicalGroup
, Taxon targetTaxon
, boolean removeFromOtherTaxa
, boolean setBasionymRelationIfApplicable
) {
759 defaultTaxonService
.changeHomotypicalGroupOfSynonym(synonym
, newHomotypicalGroup
, targetTaxon
, removeFromOtherTaxa
, setBasionymRelationIfApplicable
);
763 * @param transientObjects
765 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
768 public Map
<UUID
, TaxonBase
> saveOrUpdate(Collection
<TaxonBase
> transientObjects
) {
773 * @param transientObject
775 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
778 public UUID
update(TaxonBase transientObject
) {
779 return defaultTaxonService
.update(transientObject
);
784 * @param includeProperties
788 * @param propertyPaths
790 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
793 public List
<TaxonBase
> list(TaxonBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
794 return defaultTaxonService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
798 * @param oldSynonymRelation
800 * @param moveHomotypicGroup
801 * @param newSynonymRelationshipType
802 * @param newReference
803 * @param newReferenceDetail
804 * @param keepReference
806 * @throws HomotypicalGroupChangeException
807 * @see eu.etaxonomy.cdm.api.service.ITaxonService#moveSynonymToAnotherTaxon(eu.etaxonomy.cdm.model.taxon.SynonymRelationship, eu.etaxonomy.cdm.model.taxon.Taxon, boolean, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, eu.etaxonomy.cdm.model.reference.Reference, java.lang.String, boolean)
810 public SynonymRelationship
moveSynonymToAnotherTaxon(SynonymRelationship oldSynonymRelation
, Taxon newTaxon
, boolean moveHomotypicGroup
, SynonymRelationshipType newSynonymRelationshipType
, Reference newReference
, String newReferenceDetail
, boolean keepReference
) throws HomotypicalGroupChangeException
{
811 return defaultTaxonService
.moveSynonymToAnotherTaxon(oldSynonymRelation
, newTaxon
, moveHomotypicGroup
, newSynonymRelationshipType
, newReference
, newReferenceDetail
, keepReference
);
816 * @param matchStrategy
817 * @param mergeStrategy
819 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
822 public int deduplicate(Class
<?
extends TaxonBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
823 return defaultTaxonService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
834 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
837 public Pager
<TaxonBase
> findTitleCache(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
838 return defaultTaxonService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
847 * @param propertyPaths
849 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
852 public List
<TaxonRelationship
> listToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
853 return defaultTaxonService
.listToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
862 * @param propertyPaths
864 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageToTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
867 public Pager
<TaxonRelationship
> pageToTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
868 return defaultTaxonService
.pageToTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
877 * @param propertyPaths
879 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
882 public List
<TaxonRelationship
> listFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
883 return defaultTaxonService
.listFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
892 * @param propertyPaths
894 * @see eu.etaxonomy.cdm.api.service.ITaxonService#pageFromTaxonRelationships(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
897 public Pager
<TaxonRelationship
> pageFromTaxonRelationships(Taxon taxon
, TaxonRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
898 return defaultTaxonService
.pageFromTaxonRelationships(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
903 * @param includeRelationships
907 * @param propertyPaths
909 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listRelatedTaxa(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List)
912 public Set
<Taxon
> listRelatedTaxa(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Integer maxDepth
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
913 return defaultTaxonService
.listRelatedTaxa(taxon
, includeRelationships
, maxDepth
, limit
, start
, propertyPaths
);
920 * @param propertyPaths
922 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listClassifications(eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
925 public List
<Classification
> listClassifications(TaxonBase taxonBase
, Integer limit
, Integer start
, List
<String
> propertyPaths
) {
926 return defaultTaxonService
.listClassifications(taxonBase
, limit
, start
, propertyPaths
);
935 * @param propertyPaths
937 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
940 public Pager
<SynonymRelationship
> getSynonyms(Synonym synonym
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
941 return defaultTaxonService
.getSynonyms(synonym
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
950 * @param propertyPaths
952 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
955 public Pager
<SynonymRelationship
> getSynonyms(Taxon taxon
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
956 return defaultTaxonService
.getSynonyms(taxon
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
961 * @param propertyPaths
963 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHomotypicSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
966 public List
<Synonym
> getHomotypicSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
967 return defaultTaxonService
.getHomotypicSynonymsByHomotypicGroup(taxon
, propertyPaths
);
972 * @param propertyPaths
974 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getHeterotypicSynonymyGroups(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
977 public List
<List
<Synonym
>> getHeterotypicSynonymyGroups(Taxon taxon
, List
<String
> propertyPaths
) {
978 return defaultTaxonService
.getHeterotypicSynonymyGroups(taxon
, propertyPaths
);
987 * @param propertyPaths
989 * @see eu.etaxonomy.cdm.api.service.ITaxonService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
992 public Pager
<TaxonBase
> search(Class
<?
extends TaxonBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
993 return defaultTaxonService
.search(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
999 * @param infragenericEpithet
1000 * @param specificEpithet
1001 * @param infraspecificEpithet
1006 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1009 public Pager
<TaxonBase
> findTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1010 return defaultTaxonService
.findTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1016 * @param infragenericEpithet
1017 * @param specificEpithet
1018 * @param infraspecificEpithet
1023 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxaByName(java.lang.Class, java.lang.String, java.lang.String, java.lang.String, java.lang.String, eu.etaxonomy.cdm.model.name.Rank, java.lang.Integer, java.lang.Integer)
1026 public List
<TaxonBase
> listTaxaByName(Class
<?
extends TaxonBase
> clazz
, String uninomial
, String infragenericEpithet
, String specificEpithet
, String infraspecificEpithet
, Rank rank
, Integer pageSize
, Integer pageNumber
) {
1027 return defaultTaxonService
.listTaxaByName(clazz
, uninomial
, infragenericEpithet
, specificEpithet
, infraspecificEpithet
, rank
, pageSize
, pageNumber
);
1031 * @param configurator
1033 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNames(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1036 public Pager
<IdentifiableEntity
> findTaxaAndNames(IFindTaxaAndNamesConfigurator configurator
) {
1037 return defaultTaxonService
.findTaxaAndNames(configurator
);
1041 * @param queryString
1042 * @param classification
1044 * @param highlightFragments
1048 * @param propertyPaths
1050 * @throws CorruptIndexException
1051 * @throws IOException
1052 * @throws ParseException
1053 * @throws LuceneMultiSearchException
1055 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByEverythingFullText(java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1059 public Pager
<SearchResult
<TaxonBase
>> findByEverythingFullText(String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1060 return defaultTaxonService
.findByEverythingFullText(queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1065 * @param queryString
1066 * @param classification
1068 * @param highlightFragments
1072 * @param propertyPaths
1074 * @throws CorruptIndexException
1075 * @throws IOException
1076 * @throws ParseException
1077 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1080 public Pager
<SearchResult
<TaxonBase
>> findByFullText(Class
<?
extends TaxonBase
> clazz
, String queryString
, Classification classification
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1081 return defaultTaxonService
.findByFullText(clazz
, queryString
, classification
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1086 * @param statusFilter
1087 * @param classification
1091 * @param propertyPaths
1093 * @throws IOException
1094 * @throws ParseException
1095 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDistribution(java.util.List, java.util.List, eu.etaxonomy.cdm.model.taxon.Classification, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1098 public Pager
<SearchResult
<TaxonBase
>> findByDistribution(List
<NamedArea
> areaFilter
, List
<PresenceAbsenceTermBase
<?
>> statusFilter
, Classification classification
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws IOException
, ParseException
{
1099 return defaultTaxonService
.findByDistribution(areaFilter
, statusFilter
, classification
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1103 * @param searchModes
1104 * @param queryString
1105 * @param classification
1107 * @param distributionStatus
1109 * @param highlightFragments
1113 * @param propertyPaths
1115 * @throws CorruptIndexException
1116 * @throws IOException
1117 * @throws ParseException
1118 * @throws LuceneMultiSearchException
1119 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesByFullText(java.util.EnumSet, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.Set, java.util.Set, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1122 public Pager
<SearchResult
<TaxonBase
>> findTaxaAndNamesByFullText(EnumSet
<TaxaAndNamesSearchMode
> searchModes
, String queryString
, Classification classification
, Set
<NamedArea
> namedAreas
, Set
<PresenceAbsenceTermBase
<?
>> distributionStatus
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
, LuceneMultiSearchException
{
1123 return defaultTaxonService
.findTaxaAndNamesByFullText(searchModes
, queryString
, classification
, namedAreas
, distributionStatus
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1128 * @param queryString
1129 * @param classification
1132 * @param highlightFragments
1136 * @param propertyPaths
1138 * @throws CorruptIndexException
1139 * @throws IOException
1140 * @throws ParseException
1141 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findByDescriptionElementFullText(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.model.taxon.Classification, java.util.List, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
1144 public Pager
<SearchResult
<TaxonBase
>> findByDescriptionElementFullText(Class
<?
extends DescriptionElementBase
> clazz
, String queryString
, Classification classification
, List
<Feature
> features
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
1145 return defaultTaxonService
.findByDescriptionElementFullText(clazz
, queryString
, classification
, features
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
1152 * @param widthOrDuration
1156 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getAllMedia(eu.etaxonomy.cdm.model.taxon.Taxon, int, int, int, java.lang.String[])
1160 public List
<MediaRepresentation
> getAllMedia(Taxon taxon
, int size
, int height
, int widthOrDuration
, String
[] mimeTypes
) {
1161 return defaultTaxonService
.getAllMedia(taxon
, size
, height
, widthOrDuration
, mimeTypes
);
1166 * @param includeRelationships
1167 * @param limitToGalleries
1168 * @param propertyPath
1171 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listTaxonDescriptionMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, boolean, java.util.List)
1175 public List
<Media
> listTaxonDescriptionMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, boolean limitToGalleries
, List
<String
> propertyPath
) {
1176 return defaultTaxonService
.listTaxonDescriptionMedia(taxon
, includeRelationships
, limitToGalleries
, propertyPath
);
1181 * @param includeRelationships
1182 * @param limitToGalleries
1183 * @param includeTaxonDescriptions
1184 * @param includeOccurrences
1185 * @param includeTaxonNameDescriptions
1186 * @param propertyPath
1188 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listMedia(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.Set, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.lang.Boolean, java.util.List)
1191 public List
<Media
> listMedia(Taxon taxon
, Set
<TaxonRelationshipEdge
> includeRelationships
, Boolean limitToGalleries
, Boolean includeTaxonDescriptions
, Boolean includeOccurrences
, Boolean includeTaxonNameDescriptions
, List
<String
> propertyPath
) {
1192 return defaultTaxonService
.listMedia(taxon
, includeRelationships
, limitToGalleries
, includeTaxonDescriptions
, includeOccurrences
, includeTaxonNameDescriptions
, propertyPath
);
1198 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaByID(java.util.Set)
1201 public List
<TaxonBase
> findTaxaByID(Set
<Integer
> listOfIDs
) {
1202 return defaultTaxonService
.findTaxaByID(listOfIDs
);
1207 * @param propertyPaths
1209 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxonByUuid(java.util.UUID, java.util.List)
1212 public TaxonBase
findTaxonByUuid(UUID uuid
, List
<String
> propertyPaths
) {
1213 return defaultTaxonService
.findTaxonByUuid(uuid
, propertyPaths
);
1218 * @see eu.etaxonomy.cdm.api.service.ITaxonService#countAllRelationships()
1221 public int countAllRelationships() {
1222 return defaultTaxonService
.countAllRelationships();
1226 * @param propertyPath
1228 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNames(java.util.List)
1231 public List
<TaxonNameBase
> findIdenticalTaxonNames(List
<String
> propertyPath
) {
1232 return defaultTaxonService
.findIdenticalTaxonNames(propertyPath
);
1236 * @param propertyPath
1238 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findIdenticalTaxonNameIds(java.util.List)
1241 public List
<TaxonNameBase
> findIdenticalTaxonNameIds(List
<String
> propertyPath
) {
1242 return defaultTaxonService
.findIdenticalTaxonNameIds(propertyPath
);
1248 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getPhylumName(eu.etaxonomy.cdm.model.name.TaxonNameBase)
1251 public String
getPhylumName(TaxonNameBase name
) {
1252 return defaultTaxonService
.getPhylumName(name
);
1258 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonymRelationships(eu.etaxonomy.cdm.model.taxon.Synonym)
1261 public long deleteSynonymRelationships(Synonym syn
) {
1262 return defaultTaxonService
.deleteSynonymRelationships(syn
);
1271 * @param propertyPaths
1274 * @see eu.etaxonomy.cdm.api.service.ITaxonService#listSynonymRelationships(eu.etaxonomy.cdm.model.taxon.TaxonBase, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List, eu.etaxonomy.cdm.model.common.RelationshipBase.Direction)
1277 public List
<SynonymRelationship
> listSynonymRelationships(TaxonBase taxonBase
, SynonymRelationshipType type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
, Direction direction
) {
1278 return defaultTaxonService
.listSynonymRelationships(taxonBase
, type
, pageSize
, pageNumber
, orderHints
, propertyPaths
, direction
);
1284 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(java.lang.String)
1287 public Taxon
findBestMatchingTaxon(String taxonName
) {
1288 return defaultTaxonService
.findBestMatchingTaxon(taxonName
);
1294 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingTaxon(eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator)
1297 public Taxon
findBestMatchingTaxon(MatchingTaxonConfigurator config
) {
1298 return defaultTaxonService
.findBestMatchingTaxon(config
);
1304 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findBestMatchingSynonym(java.lang.String)
1307 public Synonym
findBestMatchingSynonym(String taxonName
) {
1308 return defaultTaxonService
.findBestMatchingSynonym(taxonName
);
1313 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheTaxon()
1316 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheTaxon() {
1317 return defaultTaxonService
.getUuidAndTitleCacheTaxon();
1322 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getUuidAndTitleCacheSynonym()
1325 public List
<UuidAndTitleCache
<TaxonBase
>> getUuidAndTitleCacheSynonym() {
1326 return defaultTaxonService
.getUuidAndTitleCacheSynonym();
1330 * @param configurator
1332 * @see eu.etaxonomy.cdm.api.service.ITaxonService#findTaxaAndNamesForEditor(eu.etaxonomy.cdm.api.service.config.IFindTaxaAndNamesConfigurator)
1335 public List
<UuidAndTitleCache
<TaxonBase
>> findTaxaAndNamesForEditor(IFindTaxaAndNamesConfigurator configurator
) {
1336 return defaultTaxonService
.findTaxaAndNamesForEditor(configurator
);
1343 * @param doWithMisappliedNames
1345 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType, boolean)
1348 public List
<Synonym
> createInferredSynonyms(Taxon taxon
, Classification tree
, SynonymRelationshipType type
, boolean doWithMisappliedNames
) {
1349 return defaultTaxonService
.createInferredSynonyms(taxon
, tree
, type
, doWithMisappliedNames
);
1355 * @param doWithMisappliedNames
1357 * @see eu.etaxonomy.cdm.api.service.ITaxonService#createAllInferredSynonyms(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.model.taxon.Classification, boolean)
1360 public List
<Synonym
> createAllInferredSynonyms(Taxon taxon
, Classification tree
, boolean doWithMisappliedNames
) {
1361 return defaultTaxonService
.createAllInferredSynonyms(taxon
, tree
, doWithMisappliedNames
);
1365 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1368 public void deleteSynonym(Synonym arg0
, SynonymDeletionConfigurator arg1
) {
1369 defaultTaxonService
.deleteSynonym(arg0
, arg1
);
1373 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteSynonym(eu.etaxonomy.cdm.model.taxon.Synonym, eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.SynonymDeletionConfigurator)
1376 public void deleteSynonym(Synonym arg0
, Taxon arg1
, SynonymDeletionConfigurator arg2
) {
1377 defaultTaxonService
.deleteSynonym(arg0
, arg1
, arg2
);
1381 * @see eu.etaxonomy.cdm.api.service.ITaxonService#deleteTaxon(eu.etaxonomy.cdm.model.taxon.Taxon, eu.etaxonomy.cdm.api.service.config.TaxonDeletionConfigurator, eu.etaxonomy.cdm.model.taxon.Classification)
1384 public UUID
deleteTaxon(Taxon arg0
, TaxonDeletionConfigurator arg1
, Classification arg2
)
1385 throws DataChangeNoRollbackException
{
1386 return defaultTaxonService
.deleteTaxon(arg0
, arg1
, arg2
);
1390 * @see eu.etaxonomy.cdm.api.service.ITaxonService#getSynonymsByHomotypicGroup(eu.etaxonomy.cdm.model.taxon.Taxon, java.util.List)
1393 public List
<List
<Synonym
>> getSynonymsByHomotypicGroup(Taxon taxon
, List
<String
> propertyPaths
) {
1394 return defaultTaxonService
.getSynonymsByHomotypicGroup(taxon
, propertyPaths
);
1398 public Synonym
changeRelatedTaxonToSynonym(Taxon fromTaxon
, Taxon toTaxon
,
1399 TaxonRelationshipType oldRelationshipType
,
1400 SynonymRelationshipType synonymRelationshipType
)
1401 throws DataChangeNoRollbackException
{
1403 return defaultTaxonService
.changeRelatedTaxonToSynonym(fromTaxon
, toTaxon
, oldRelationshipType
, synonymRelationshipType
);