Actions for creating and updating the consensus sequence in AlignmentEditor implemented.
[taxeditor.git] / eu.etaxonomy.taxeditor.editor / plugin.xml
1 <?xml version="1.0" encoding="UTF-8"?>
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793
794
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872
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1111 style="push">
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1307 <!--command
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1311 </command-->
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1406 defaultHandler="eu.etaxonomy.taxeditor.editor.view.uses.handler.CreateUseRecordHandler"
1407 id="eu.etaxonomy.taxeditor.editor.use.createUseRecord"
1408 name="%command.name.16">
1409 </command>
1410 <command
1411 categoryId="eu.etaxonomy.taxeditor.editor.view.uses.command.category"
1412 defaultHandler="eu.etaxonomy.taxeditor.editor.view.uses.handler.CreateUseSummaryHandler"
1413 id="eu.etaxonomy.taxeditor.editor.use.createUseSummary"
1414 name="%command.name.15">
1415 </command>
1416 <command
1417 id="eu.etaxonomy.taxeditor.editor.use.command.delete"
1418 name="%command.name.47">
1419 </command>
1420 <category
1421 id="eu.etaxonomy.taxeditor.editor.media.category"
1422 name="%category.name.3">
1423 </category>
1424 <command
1425 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1426 defaultHandler="eu.etaxonomy.taxeditor.editor.view.media.handler.MoveImageDownInListHandler"
1427 id="eu.etaxonomy.taxeditor.editor.media.command.moveimgdown"
1428 name="%command.name.19">
1429 </command>
1430 <command
1431 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1432 defaultHandler="eu.etaxonomy.taxeditor.editor.view.media.handler.AddImageGalleryHandler"
1433 id="eu.etaxonomy.taxeditor.editor.media.command.newimagegallery"
1434 name="%command.name.20">
1435 </command>
1436 <command
1437 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1438 defaultHandler="eu.etaxonomy.taxeditor.editor.view.media.handler.CreateMediaHandler"
1439 id="eu.etaxonomy.taxeditor.editor.media.command.newimage"
1440 name="%command.name.21">
1441 </command>
1442 <command
1443 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1444 defaultHandler="eu.etaxonomy.taxeditor.editor.view.media.handler.AddExistingMediaHandler"
1445 id="eu.etaxonomy.taxeditor.editor.media.command.useExistingImage"
1446 name="%command.name.37">
1447 </command>
1448 <command
1449 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1450 defaultHandler="eu.etaxonomy.taxeditor.editor.view.media.handler.MoveImageUpInListHandler"
1451 id="eu.etaxonomy.taxeditor.editor.media.command.moveimgup"
1452 name="%command.name.22">
1453 </command>
1454 <command
1455 categoryId="eu.etaxonomy.taxeditor.editor.media.category"
1456 defaultHandler="eu.etaxonomy.taxeditor.editor.view.descriptive.handler.DeleteHandler"
1457 id="eu.etaxonomy.taxeditor.editor.media.command.delete"
1458 name="%command.name.49">
1459 </command>
1460 <category
1461 id="eu.etaxonomy.taxeditor.editor.new.category"
1462 name="%category.name.4">
1463 </category>
1464 <command
1465 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1466 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.create.NewReferenceHandler"
1467 id="eu.etaxonomy.taxeditor.editor.command.new.reference"
1468 name="%command.name.23">
1469 </command>
1470 <command
1471 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1472 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.create.NewNameHandler"
1473 id="eu.etaxonomy.taxeditor.editor.command.new.name"
1474 name="%command.name.24">
1475 </command>
1476 <command
1477 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1478 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.create.NewTeamHandler"
1479 id="eu.etaxonomy.taxeditor.editor.command.new.team"
1480 name="%command.name.25">
1481 </command>
1482 <command
1483 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1484 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.create.NewPersonHandler"
1485 id="eu.etaxonomy.taxeditor.editor.command.new.person"
1486 name="%command.name.26">
1487 </command>
1488 <command
1489 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1490 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.create.NewSpecimenHandler"
1491 id="eu.etaxonomy.taxeditor.editor.command.new.specimen"
1492 name="%command.name.27">
1493 </command>
1494 <category
1495 id="eu.etaxonomy.taxeditor.editor.key.category"
1496 name="%category.name.5">
1497 </category>
1498 <command
1499 categoryId="eu.etaxonomy.taxeditor.editor.key.category"
1500 defaultHandler="eu.etaxonomy.taxeditor.editor.key.polytomous.handler.CreateChildNodeHandler"
1501 id="eu.etaxonomy.taxeditor.key.polytomous.command.new.child"
1502 name="%command.name.28">
1503 </command>
1504 <command
1505 categoryId="eu.etaxonomy.taxeditor.editor.key.category"
1506 defaultHandler="eu.etaxonomy.taxeditor.editor.key.polytomous.handler.CreateSiblingNodeHandler"
1507 id="eu.etaxonomy.taxeditor.key.polytomous.command.new.sibling"
1508 name="%command.name.29">
1509 </command>
1510 <command
1511 categoryId="eu.etaxonomy.taxeditor.editor.key.category"
1512 defaultHandler="eu.etaxonomy.taxeditor.editor.key.polytomous.handler.RefreshNodeNumberingHandler"
1513 id="eu.etaxonomy.taxeditor.key.polytomous.command.refresh"
1514 name="%command.name.30">
1515 </command>
1516 <command
1517 categoryId="eu.etaxonomy.taxeditor.editor.key.category"
1518 defaultHandler="eu.etaxonomy.taxeditor.editor.key.handler.ApplyLayoutHandler"
1519 id="eu.etaxonomy.taxeditor.key.command.applyLayout"
1520 name="%command.name.31">
1521 </command>
1522 <command
1523 defaultHandler="eu.etaxonomy.taxeditor.editor.key.polytomous.handler.DeleteNodeHandler"
1524 id="eu.etaxonomy.taxeditor.key.polytomous.command.delete"
1525 name="%command.name.50">
1526 </command>
1527 <category
1528 id="eu.etaxonomy.taxeditor.editor.view.concept.category"
1529 name="%category.name.6">
1530 </category>
1531 <command
1532 categoryId="eu.etaxonomy.taxeditor.editor.view.concept.category"
1533 defaultHandler="eu.etaxonomy.taxeditor.editor.view.concept.handler.CreateConceptRelationHandler"
1534 id="eu.etaxonomy.taxeditor.editor.name.createConceptRelation"
1535 name="%command.name.32">
1536 </command>
1537 <command
1538 categoryId="eu.etaxonomy.taxeditor.editor.view.concept.category"
1539 defaultHandler="eu.etaxonomy.taxeditor.editor.view.concept.handler.OpenRelatedConceptHandler"
1540 id="eu.etaxonomy.taxeditor.editor.view.concept.command.open"
1541 name="%command.name.33">
1542 </command>
1543 <category
1544 id="eu.etaxonomy.taxeditor.bulkeditor.group.category"
1545 name="%category.name.7">
1546 </category>
1547 <command
1548 categoryId="eu.etaxonomy.taxeditor.bulkeditor.group.category"
1549 defaultHandler="eu.etaxonomy.taxeditor.editor.group.authority.handler.EditCdmAuthoritiesHandler"
1550 id="eu.etaxonomy.taxeditor.group.cdmauthorities.edit"
1551 name="%command.name.34">
1552 </command>
1553 <command
1554 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenDerivateViewHandler"
1555 id="eu.etaxonomy.taxeditor.editor.handler.openDerivateView"
1556 name="%command.name.35">
1557 </command>
1558 <command
1559 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenChecklistEditorHandler"
1560 id="eu.etaxonomy.taxeditor.editor.handler.OpenChecklistViewHandler"
1561 name="%command.name.38">
1562 </command>
1563 <command
1564 categoryId="eu.etaxonomy.taxeditor.editor.new.category"
1565 defaultHandler="eu.etaxonomy.taxeditor.view.datasource.handler.CreateDataSourceHandler"
1566 id="eu.etaxonomy.taxeditor.editor.command.new.datasource"
1567 name="%command.name.39">
1568 </command>
1569 <command
1570 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenAlignmentEditorHandler"
1571 id="eu.etaxonomy.taxeditor.editor.handler.OpenAlignmentEditor"
1572 name="Open Alignment Editor">
1573 </command>
1574 <command
1575 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram"
1576 name="Load Pherogram">
1577 </command>
1578 <command
1579 id="eu.etaxonomy.taxeditor.editor.handler.showOnlyIndividualAssociations"
1580 name="%command.name.41">
1581 </command>
1582 <command
1583 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleInsertOverwrite"
1584 name="Toggle insert/overwrite">
1585 </command>
1586 <command
1587 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.toggleLeftRightInsertion"
1588 name="Toggle left/right insertion in base call sequence">
1589 </command>
1590 <command
1591 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.OpenTaxonEditorHandler"
1592 id="eu.etaxonomy.taxeditor.editor.openTaxonEditor"
1593 name="%command.name.42">
1594 <commandParameter
1595 id="eu.etaxonomy.taxeditor.editor.taxonParameter"
1596 name="%commandParameter.name"
1597 optional="false"
1598 typeId="eu.etaxonomy.taxeditor.editor.taxonParameterType">
1599 </commandParameter>
1600 </command>
1601 <commandParameterType
1602 converter="eu.etaxonomy.taxeditor.editor.handler.TaxonParameterConverter"
1603 id="eu.etaxonomy.taxeditor.editor.taxonParameterType"
1604 type="eu.etaxonomy.cdm.model.taxon.TaxonBase">
1605 </commandParameterType>
1606 <command
1607 defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.CreateFieldUnitHandler"
1608 id="eu.etaxonomy.taxeditor.editor.derivate.createFieldUnit"
1609 name="%command.name.43">
1610 </command>
1611 <command
1612 defaultHandler="eu.etaxonomy.taxeditor.editor.view.derivate.handler.DeleteDerivateHandler"
1613 id="eu.etaxonomy.taxeditor.editor.derivate.deepDelete"
1614 name="%command.name.44">
1615 </command>
1616 <command
1617 categoryId="eu.etaxonomy.taxeditor.editor.view.descriptive.command.category"
1618 defaultHandler="eu.etaxonomy.taxeditor.editor.view.descriptive.handler.MoveDescriptionToOtherTaxonHandler"
1619 id="eu.etaxonomy.taxeditor.editor.commands.description.moveDescriptionToTaxon"
1620 name="%command.name.13">
1621 </command>
1622 <command
1623 categoryId="eu.etaxonomy.taxeditor.editor.view.descriptive.command.category"
1624 defaultHandler="eu.etaxonomy.taxeditor.editor.view.descriptive.handler.MoveDescriptionElementsHandler"
1625 id="eu.etaxonomy.taxeditor.description.commands.moveDescriptionElements"
1626 name="%command.name.12">
1627 </command>
1628 <command
1629 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.EditSequenceHandler"
1630 id="eu.etaxonomy.taxeditor.editor.editSequence"
1631 name="Edit Sequence">
1632 </command>
1633 <command
1634 defaultHandler="eu.etaxonomy.taxeditor.editor.handler.ShowPherogramHandler"
1635 id="eu.etaxonomy.taxeditor.editor.showPherogram"
1636 name="Show Pherogram">
1637 </command>
1638 <command
1639 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramLeft"
1640 name="Cut pherogram left">
1641 </command>
1642 <command
1643 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.cutPherogramRight"
1644 name="Cut pherogram right">
1645 </command>
1646 <command
1647 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.reverseComplementRows"
1648 name="Reverse complement selected rows">
1649 </command>
1650 <command
1651 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.createConsensus"
1652 name="(Re)create consensus sequence">
1653 </command>
1654 <command
1655 id="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.updateConsensus"
1656 name="Update consensus sequence">
1657 </command>
1658 </extension>
1659 <extension
1660 point="org.eclipse.core.expressions.definitions">
1661 <definition
1662 id="nameEditorActive">
1663 <with
1664 variable="activeEditorId">
1665 <equals
1666 value="eu.etaxonomy.taxeditor.editor.multipagetaxonview">
1667 </equals>
1668 </with>
1669 </definition>
1670 <definition
1671 id="isAcceptedTaxon">
1672 <with
1673 variable="selection">
1674 <test
1675 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isAcceptedTaxon">
1676 </test>
1677 </with>
1678 </definition>
1679 <definition
1680 id="isSynonym">
1681 <with
1682 variable="selection">
1683 <test
1684 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isSynonym">
1685 </test>
1686 </with>
1687 </definition>
1688 <definition
1689 id="isMisapplication">
1690 <with
1691 variable="selection">
1692 <test
1693 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isMisapplication">
1694 </test>
1695 </with>
1696 </definition>
1697 <definition
1698 id="isTaxonBase">
1699 <with
1700 variable="selection">
1701 <test
1702 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isTaxonBase">
1703 </test>
1704 </with>
1705 </definition>
1706 <definition
1707 id="hasEmptyNames">
1708 <with
1709 variable="selection">
1710 <test
1711 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.hasEmptyNames">
1712 </test>
1713 </with>
1714 </definition>
1715 <definition
1716 id="isDeletable">
1717 <with
1718 variable="selection">
1719 <test
1720 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isDeletable">
1721 </test>
1722 </with>
1723 </definition>
1724 <definition
1725 id="isMedia">
1726 <with
1727 variable="selection">
1728 <test
1729 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isMedia">
1730 </test>
1731 </with>
1732 </definition>
1733 <definition
1734 id="isTaxonEditor">
1735 <with
1736 variable="selection">
1737 <test
1738 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isTaxonEditor">
1739 </test>
1740 </with>
1741 </definition>
1742 <definition
1743 id="isBulkEditor">
1744 <with
1745 variable="selection">
1746 <test
1747 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isBulkEditor">
1748 </test>
1749 </with>
1750 </definition>
1751 <definition
1752 id="isDerivateEditor">
1753 <with
1754 variable="selection">
1755 <test
1756 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isDerivateEditor">
1757 </test>
1758 </with>
1759 </definition>
1760 <definition
1761 id="isDescription">
1762 <with
1763 variable="selection">
1764 <test
1765 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isDescription">
1766 </test>
1767 </with>
1768 </definition>
1769 <definition
1770 id="isDescriptionElement">
1771 <with
1772 variable="selection">
1773 <test
1774 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isDescriptionElement">
1775 </test>
1776 </with>
1777 </definition>
1778 <definition
1779 id="isFeatureNodeContainer">
1780 <with
1781 variable="selection">
1782 <test
1783 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isFeatureNodeContainer">
1784 </test>
1785 </with>
1786 </definition>
1787 <definition
1788 id="isImageGallery">
1789 <with
1790 variable="selection">
1791 <test
1792 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isImageGallery">
1793 </test>
1794 </with>
1795 </definition>
1796 <definition
1797 id="isAcceptedAndHasNoHomotypicSynonyms">
1798 <with
1799 variable="selection">
1800 <test
1801 property="eu.etaxonomy.taxeditor.editor.name.propertyTester.isAcceptedAndHasNoHomotypicSynonyms">
1802 </test>
1803 </with>
1804 </definition>
1805 <definition
1806 id="isGroupEditor">
1807 <with
1808 variable="activeEditor">
1809 <test
1810 property="taxeditor-bulkeditor.propertyTester.isGroupEditor">
1811 </test>
1812 </with>
1813 </definition>
1814 <definition
1815 id="isIndividualsAssociation">
1816 <with
1817 variable="selection">
1818 <test
1819 property="eu.etaxonomy.taxeditor.descriptions.propertyTester.isIndividualsAssociation">
1820 </test>
1821 </with>
1822 </definition>
1823 <definition
1824 id="isSequence">
1825 <with
1826 variable="selection">
1827 <test
1828 property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSequence">
1829 </test>
1830 </with>
1831 </definition>
1832 <definition
1833 id="isSingleRead">
1834 <with
1835 variable="selection">
1836 <test
1837 property="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester.isSingleRead">
1838 </test>
1839 </with>
1840 </definition>
1841 </extension>
1842 <extension
1843 point="org.eclipse.core.expressions.propertyTesters">
1844 <propertyTester
1845 class="eu.etaxonomy.taxeditor.editor.name.handler.NameEditorMenuPropertyTester"
1846 id="eu.etaxonomy.taxeditor.editor.name.propertyTester"
1847 namespace="eu.etaxonomy.taxeditor.editor.name.propertyTester"
1848 properties="isAcceptedTaxon,isSynonym,isMisapplication,isTaxonBase,hasEmptyNames,isAcceptedAndHasNoHomotypicSynonyms"
1849 type="org.eclipse.jface.viewers.IStructuredSelection">
1850 </propertyTester>
1851 <propertyTester
1852 class="eu.etaxonomy.taxeditor.editor.view.descriptive.handler.DescriptionsMenuPropertyTester"
1853 id="eu.etaxonomy.taxeditor.descriptions.PropertyTester"
1854 namespace="eu.etaxonomy.taxeditor.descriptions.propertyTester"
1855 properties="isMedia,isDescription,isDescriptionElement,isDeletable,isFeatureNodeContainer,isImageGallery,isTaxonEditor,isBulkEditor,isDerivateEditor, isIndividualsAssociation"
1856 type="org.eclipse.jface.viewers.TreeSelection">
1857 </propertyTester>
1858 <propertyTester
1859 class="eu.etaxonomy.taxeditor.bulkeditor.command.BulkEditorPropertyTester"
1860 id="taxeditor-bulkeditor.PropertyTester"
1861 namespace="taxeditor-bulkeditor.propertyTester"
1862 properties="isGroupEditor"
1863 type="eu.etaxonomy.taxeditor.bulkeditor.BulkEditor">
1864 </propertyTester>
1865 <propertyTester
1866 class="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
1867 id="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
1868 namespace="eu.etaxonomy.taxeditor.editor.handler.SpecimenPropertyTester"
1869 properties="isSequence,isSingleRead"
1870 type="org.eclipse.jface.viewers.IStructuredSelection">
1871 </propertyTester>
1872 </extension>
1873 <extension
1874 point="org.eclipse.ui.bindings">
1875 <scheme
1876 description="%scheme.description"
1877 id="eu.etaxonomy.taxeditor.bindings.scheme.default"
1878 name="%scheme.name">
1879 </scheme>
1880 <key
1881 commandId="eu.etaxonomy.taxeditor.editor.molecular.AlignmentEditor.loadPherogram"
1882 schemeId="eu.etaxonomy.taxeditor.bindings.scheme.default"
1883 sequence="M1+O">
1884 </key>
1885 </extension>
1886 <extension
1887 point="org.eclipse.ui.importWizards">
1888 <wizard
1889 category="eu.etaxonomy.taxeditor.import.category.cdm"
1890 class="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenSearchWizard"
1891 id="eu.etaxonomy.taxeditor.editor.view.dataimport.SpecimenSearchWizard"
1892 name="%wizard.name">
1893 <description>
1894 %wizard.description
1895 </description>
1896 </wizard>
1897 </extension>
1898 <extension
1899 point="eu.etaxonomy.taxeditor.store.cdmViewer">
1900 <cdmViewer
1901 class="eu.etaxonomy.taxeditor.editor.EditorCdmViewer">
1902 </cdmViewer>
1903 </extension>
1904 </plugin>