3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.HashSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
26 import org
.hibernate
.search
.spatial
.impl
.Rectangle
;
28 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
29 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
30 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.dto
.DerivateHierarchyDTO
;
34 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
35 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
36 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
37 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
38 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
39 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
40 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
41 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
42 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
43 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
44 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
45 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
46 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
47 import eu
.etaxonomy
.cdm
.model
.location
.Country
;
48 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
49 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
50 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
51 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
52 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivationEvent
;
53 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
54 import eu
.etaxonomy
.cdm
.model
.occurrence
.DeterminationEvent
;
55 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
56 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
57 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
58 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
59 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
60 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
61 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
62 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
63 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
64 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
65 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
66 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
67 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
74 public class TransientOccurenceService
implements IOccurrenceService
{
76 private final IOccurrenceService defaultService
;
77 private final Collection
<SpecimenOrObservationBase
> units
;
80 * @param defaultService
82 public TransientOccurenceService(IOccurrenceService defaultService
) {
83 this.defaultService
= defaultService
;
84 this.units
= new HashSet
<SpecimenOrObservationBase
>();
92 * @param propertyPaths
94 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
97 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
98 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
102 * @param annotatedObj
107 * @param propertyPaths
109 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
112 public Pager
<Annotation
> getAnnotations(SpecimenOrObservationBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
113 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
118 * @see eu.etaxonomy.cdm.api.service.IService#clear()
121 public void clear() {
122 defaultService
.clear();
128 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
131 public void lock(SpecimenOrObservationBase t
, LockMode lockMode
) {
132 defaultService
.lock(t
, lockMode
);
138 * @param propertyPaths
139 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
142 public void refresh(SpecimenOrObservationBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
143 defaultService
.refresh(t
, lockMode
, propertyPaths
);
148 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
151 public void updateTitleCache() {
152 defaultService
.updateTitleCache();
158 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
161 public AuditEventRecord
<SpecimenOrObservationBase
> getNextAuditEvent(SpecimenOrObservationBase t
) {
162 return defaultService
.getNextAuditEvent(t
);
166 * @param annotatableEntity
171 * @param propertyPaths
173 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
176 public Pager
<Marker
> getMarkers(SpecimenOrObservationBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
177 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
183 * @param cacheStrategy
185 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
188 public void updateTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<SpecimenOrObservationBase
> cacheStrategy
, IProgressMonitor monitor
) {
189 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
195 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
198 public AuditEventRecord
<SpecimenOrObservationBase
> getPreviousAuditEvent(SpecimenOrObservationBase t
) {
199 return defaultService
.getPreviousAuditEvent(t
);
205 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
208 public Country
getCountryByIso(String iso639
) {
209 return defaultService
.getCountryByIso(iso639
);
215 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
218 public int count(Class
<?
extends SpecimenOrObservationBase
> clazz
) {
219 return defaultService
.count(clazz
);
225 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
228 public List
<Country
> getCountryByName(String name
) {
229 return defaultService
.getCountryByName(name
);
234 * @param determinedAs
238 * @param propertyPaths
240 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
243 public Pager
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, TaxonBase determinedAs
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
244 return defaultService
.list(type
, determinedAs
, limit
, start
, orderHints
, propertyPaths
);
255 * @param propertyPaths
257 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
260 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(Class
<?
extends SpecimenOrObservationBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
261 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
267 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
270 public SpecimenOrObservationBase
find(LSID lsid
) {
271 return defaultService
.find(lsid
);
275 * @param persistentObject
277 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
280 public String
delete(SpecimenOrObservationBase persistentObject
) {
281 return defaultService
.delete(persistentObject
);
289 * @param propertyPaths
291 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
294 public List
<Object
[]> groupMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
295 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
301 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
304 public boolean exists(UUID uuid
) {
305 return defaultService
.exists(uuid
);
312 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
315 public SpecimenOrObservationBase
replace(SpecimenOrObservationBase x
, SpecimenOrObservationBase y
) {
316 return defaultService
.replace(x
, y
);
322 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
325 public List
<SpecimenOrObservationBase
> find(Set
<UUID
> uuidSet
) {
326 return defaultService
.find(uuidSet
);
333 * @param propertyPaths
335 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
338 public Pager
<IdentifiableSource
> getSources(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
339 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
345 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
348 public SpecimenOrObservationBase
find(UUID uuid
) {
349 return defaultService
.find(uuid
);
355 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
358 public SpecimenOrObservationBase
find(int id
) {
359 return defaultService
.find(id
);
366 * @param propertyPaths
368 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
371 public Pager
<Rights
> getRights(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
372 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
379 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
382 public int countMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
) {
383 return defaultService
.countMarkers(clazz
, technical
);
390 * @param propertyPaths
392 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
395 public Pager
<Media
> getMedia(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
396 return defaultService
.getMedia(occurence
, pageSize
, pageNumber
, propertyPaths
);
402 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
405 public List
<SpecimenOrObservationBase
> findById(Set
<Integer
> idSet
) {
406 return defaultService
.findById(idSet
);
414 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
417 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
418 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
423 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
426 public Session
getSession() {
427 return defaultService
.getSession();
432 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
435 public List
<UuidAndTitleCache
<SpecimenOrObservationBase
>> getUuidAndTitleCache() {
436 return defaultService
.getUuidAndTitleCache();
444 * @param propertyPaths
446 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
449 public List
<Object
[]> group(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
450 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
458 * @param propertyPaths
460 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
463 public Pager
<DeterminationEvent
> getDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonBase
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
464 return defaultService
.getDeterminations(occurence
, taxonBase
, pageSize
, pageNumber
, propertyPaths
);
475 * @param propertyPaths
477 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
480 public Pager
<SpecimenOrObservationBase
> findByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
481 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
488 * @param propertyPaths
490 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
493 public Pager
<DerivationEvent
> getDerivationEvents(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
494 return defaultService
.getDerivationEvents(occurence
, pageSize
, pageNumber
, propertyPaths
);
502 * @param propertyPaths
504 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
507 public List
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
508 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
517 * @param propertyPaths
519 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
522 public Pager
<SpecimenOrObservationBase
> search(Class
<?
extends SpecimenOrObservationBase
> clazz
, String query
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
523 return defaultService
.search(clazz
, query
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
527 * @param configurator
529 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
532 public Pager
<SpecimenOrObservationBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
533 return defaultService
.findByTitle(configurator
);
542 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
545 public Integer
countByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
546 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
552 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
555 public SpecimenOrObservationBase
load(UUID uuid
) {
556 return defaultService
.load(uuid
);
561 * @param propertyPaths
563 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
566 public SpecimenOrObservationBase
load(UUID uuid
, List
<String
> propertyPaths
) {
567 return defaultService
.load(uuid
, propertyPaths
);
571 * @param configurator
573 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
576 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
577 return defaultService
.countByTitle(configurator
);
582 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
585 public List
<UuidAndTitleCache
<FieldUnit
>> getFieldUnitUuidAndTitleCache() {
586 return defaultService
.getFieldUnitUuidAndTitleCache();
591 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
594 public List
<UuidAndTitleCache
<DerivedUnit
>> getDerivedUnitUuidAndTitleCache() {
595 return defaultService
.getDerivedUnitUuidAndTitleCache();
599 * @param transientObject
601 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
604 public SpecimenOrObservationBase
merge(SpecimenOrObservationBase transientObject
) {
605 return defaultService
.merge(transientObject
);
610 * @param propertyPaths
612 * @throws DerivedUnitFacadeNotSupportedException
613 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
616 public DerivedUnitFacade
getDerivedUnitFacade(DerivedUnit derivedUnit
, List
<String
> propertyPaths
) throws DerivedUnitFacadeNotSupportedException
{
617 return defaultService
.getDerivedUnitFacade(derivedUnit
, propertyPaths
);
628 * @param propertyPaths
630 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
633 public List
<SpecimenOrObservationBase
> listByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
634 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
639 * @param propertyPaths
641 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
644 public List
<DerivedUnitFacade
> listDerivedUnitFacades(DescriptionBase description
, List
<String
> propertyPaths
) {
645 return defaultService
.listDerivedUnitFacades(description
, propertyPaths
);
653 * @param propertyPaths
655 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
658 public Pager
<SpecimenOrObservationBase
> page(Class
<?
extends SpecimenOrObservationBase
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
659 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
664 * @param includeRelationships
665 * @param associatedTaxon
670 * @param propertyPaths
672 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
675 public <T
extends SpecimenOrObservationBase
> List
<T
> listByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
676 return defaultService
.listByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
680 * @param persistentObject
682 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
685 public UUID
refresh(SpecimenOrObservationBase persistentObject
) {
686 return defaultService
.refresh(persistentObject
);
697 * @param propertyPaths
699 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
702 public List
<SpecimenOrObservationBase
> listByReferenceTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
703 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
711 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
714 public List
<SpecimenOrObservationBase
> rows(String tableName
, int limit
, int start
) {
715 return defaultService
.rows(tableName
, limit
, start
);
719 * @param newInstances
721 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
724 public Map
<UUID
, SpecimenOrObservationBase
> save(Collection
<SpecimenOrObservationBase
> newInstances
) {
725 for(SpecimenOrObservationBase unit
:newInstances
){
733 * @param includeRelationships
734 * @param associatedTaxon
739 * @param propertyPaths
741 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
744 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
745 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
751 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
754 public UUID
save(SpecimenOrObservationBase newInstance
) {
755 units
.add(newInstance
);
760 * @param transientObject
762 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
765 public UUID
saveOrUpdate(SpecimenOrObservationBase transientObject
) {
766 units
.add(transientObject
);
771 * @param transientObjects
773 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
776 public Map
<UUID
, SpecimenOrObservationBase
> saveOrUpdate(Collection
<SpecimenOrObservationBase
> transientObjects
) {
777 for(SpecimenOrObservationBase unit
:transientObjects
){
788 * @param highlightFragments
792 * @param propertyPaths
794 * @throws CorruptIndexException
795 * @throws IOException
796 * @throws ParseException
797 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
800 public Pager
<SearchResult
<SpecimenOrObservationBase
>> findByFullText(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Rectangle boundingBox
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
801 return defaultService
.findByFullText(clazz
, queryString
, boundingBox
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
805 * @param transientObject
807 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
810 public UUID
update(SpecimenOrObservationBase transientObject
) {
811 return defaultService
.update(transientObject
);
816 * @param includeProperties
820 * @param propertyPaths
822 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
825 public List
<SpecimenOrObservationBase
> list(SpecimenOrObservationBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
826 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
831 * @param matchStrategy
832 * @param mergeStrategy
834 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
837 public int deduplicate(Class
<?
extends SpecimenOrObservationBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
838 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
849 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
852 public Pager
<SpecimenOrObservationBase
> findTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
853 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
859 public Collection
<SpecimenOrObservationBase
> getUnits() {
864 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
867 public Collection
<FieldUnit
> getFieldUnits(UUID derivedUnitUuid
) {
868 return defaultService
.getFieldUnits(derivedUnitUuid
);
872 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
875 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
,
876 Set
<TaxonRelationshipEdge
> includeRelationships
, String taxonUUID
, Integer maxDepth
, Integer pageSize
,
877 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
878 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, taxonUUID
,
879 maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
883 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
886 public boolean moveDerivate(SpecimenOrObservationBase
<?
> from
, SpecimenOrObservationBase
<?
> to
, DerivedUnit derivate
) {
887 return defaultService
.moveDerivate(from
, to
, derivate
);
891 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
894 public boolean moveSequence(DnaSample from
, DnaSample to
, Sequence sequence
) {
895 return defaultService
.moveSequence(from
, to
, sequence
);
899 public List
<String
> isDeletable(SpecimenOrObservationBase object
,
900 DeleteConfiguratorBase config
) {
901 return defaultService
.isDeletable(object
, config
);
905 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listFieldUnitsByAssociatedTaxon(java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
908 public Collection
<FieldUnit
> listFieldUnitsByAssociatedTaxon(Set
<TaxonRelationshipEdge
> includeRelationships
,
909 Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
,
910 List
<String
> propertyPaths
) {
911 return defaultService
.listFieldUnitsByAssociatedTaxon(includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
915 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivateHierarchyDTOsByAssociatedTaxon(java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
918 public Collection
<DerivateHierarchyDTO
> listDerivateHierarchyDTOsByAssociatedTaxon(
919 Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
,
920 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
921 return listDerivateHierarchyDTOsByAssociatedTaxon(includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);