3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.HashSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
26 import org
.hibernate
.search
.spatial
.impl
.Rectangle
;
28 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
29 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
30 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.config
.SpecimenDeleteConfigurator
;
35 import eu
.etaxonomy
.cdm
.api
.service
.dto
.DerivateHierarchyDTO
;
36 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
37 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
38 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
39 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
40 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
41 import eu
.etaxonomy
.cdm
.model
.common
.ICdmBase
;
42 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
43 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
44 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
45 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
46 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
47 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
48 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
49 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
50 import eu
.etaxonomy
.cdm
.model
.location
.Country
;
51 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
52 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
53 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
54 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
55 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivationEvent
;
56 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
57 import eu
.etaxonomy
.cdm
.model
.occurrence
.DeterminationEvent
;
58 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
59 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
60 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
61 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
62 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
63 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
64 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
65 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
66 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
67 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
68 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
69 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
70 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
77 public class TransientOccurenceService
implements IOccurrenceService
{
79 private final IOccurrenceService defaultService
;
80 private final Collection
<SpecimenOrObservationBase
<?
>> units
;
83 * @param defaultService
85 public TransientOccurenceService(IOccurrenceService defaultService
) {
86 this.defaultService
= defaultService
;
87 this.units
= new HashSet
<SpecimenOrObservationBase
<?
>>();
95 * @param propertyPaths
97 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
100 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
101 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
105 * @param annotatedObj
110 * @param propertyPaths
112 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
115 public Pager
<Annotation
> getAnnotations(SpecimenOrObservationBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
116 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
121 * @see eu.etaxonomy.cdm.api.service.IService#clear()
124 public void clear() {
125 defaultService
.clear();
131 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
134 public void lock(SpecimenOrObservationBase t
, LockOptions lockOptions
) {
135 defaultService
.lock(t
, lockOptions
);
141 * @param propertyPaths
142 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
145 public void refresh(SpecimenOrObservationBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
146 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
151 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
154 public void updateTitleCache() {
155 defaultService
.updateTitleCache();
161 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
164 public AuditEventRecord
<SpecimenOrObservationBase
> getNextAuditEvent(SpecimenOrObservationBase t
) {
165 return defaultService
.getNextAuditEvent(t
);
169 * @param annotatableEntity
174 * @param propertyPaths
176 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
179 public Pager
<Marker
> getMarkers(SpecimenOrObservationBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
180 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
186 * @param cacheStrategy
188 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
191 public void updateTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<SpecimenOrObservationBase
> cacheStrategy
, IProgressMonitor monitor
) {
192 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
198 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
201 public AuditEventRecord
<SpecimenOrObservationBase
> getPreviousAuditEvent(SpecimenOrObservationBase t
) {
202 return defaultService
.getPreviousAuditEvent(t
);
208 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
211 public Country
getCountryByIso(String iso639
) {
212 return defaultService
.getCountryByIso(iso639
);
218 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
221 public int count(Class
<?
extends SpecimenOrObservationBase
> clazz
) {
222 return defaultService
.count(clazz
);
228 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
231 public List
<Country
> getCountryByName(String name
) {
232 return defaultService
.getCountryByName(name
);
237 * @param determinedAs
241 * @param propertyPaths
243 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
246 public Pager
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, TaxonBase determinedAs
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
247 return defaultService
.list(type
, determinedAs
, limit
, start
, orderHints
, propertyPaths
);
258 * @param propertyPaths
260 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
263 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(Class
<?
extends SpecimenOrObservationBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
264 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
270 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
273 public SpecimenOrObservationBase
find(LSID lsid
) {
274 return defaultService
.find(lsid
);
278 * @param persistentObject
280 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
283 public DeleteResult
delete(SpecimenOrObservationBase persistentObject
) {
284 return defaultService
.delete(persistentObject
);
292 * @param propertyPaths
294 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
297 public List
<Object
[]> groupMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
298 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
304 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
307 public boolean exists(UUID uuid
) {
308 return defaultService
.exists(uuid
);
315 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
318 public SpecimenOrObservationBase
replace(SpecimenOrObservationBase x
, SpecimenOrObservationBase y
) {
319 return defaultService
.replace(x
, y
);
325 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
328 public List
<SpecimenOrObservationBase
> find(Set
<UUID
> uuidSet
) {
329 return defaultService
.find(uuidSet
);
336 * @param propertyPaths
338 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
341 public Pager
<IdentifiableSource
> getSources(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
342 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
348 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
351 public SpecimenOrObservationBase
find(UUID uuid
) {
352 return defaultService
.find(uuid
);
358 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
361 public SpecimenOrObservationBase
find(int id
) {
362 return defaultService
.find(id
);
369 * @param propertyPaths
371 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
374 public Pager
<Rights
> getRights(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
375 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
382 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
385 public int countMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
) {
386 return defaultService
.countMarkers(clazz
, technical
);
393 * @param propertyPaths
395 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
398 public Pager
<Media
> getMedia(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
399 return defaultService
.getMedia(occurence
, pageSize
, pageNumber
, propertyPaths
);
405 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
408 public List
<SpecimenOrObservationBase
> findById(Set
<Integer
> idSet
) {
409 return defaultService
.findById(idSet
);
417 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
420 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
421 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
426 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
429 public Session
getSession() {
430 return defaultService
.getSession();
435 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
438 public List
<UuidAndTitleCache
<SpecimenOrObservationBase
>> getUuidAndTitleCache() {
439 return defaultService
.getUuidAndTitleCache();
447 * @param propertyPaths
449 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
452 public List
<Object
[]> group(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
453 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
461 * @param propertyPaths
463 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
466 public Pager
<DeterminationEvent
> getDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonBase
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
467 return defaultService
.getDeterminations(occurence
, taxonBase
, pageSize
, pageNumber
, propertyPaths
);
478 * @param propertyPaths
480 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
483 public Pager
<SpecimenOrObservationBase
> findByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
484 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
491 * @param propertyPaths
493 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
496 public Pager
<DerivationEvent
> getDerivationEvents(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
497 return defaultService
.getDerivationEvents(occurence
, pageSize
, pageNumber
, propertyPaths
);
505 * @param propertyPaths
507 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
510 public <S
extends SpecimenOrObservationBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
511 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
520 * @param propertyPaths
522 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
525 public Pager
<SpecimenOrObservationBase
> search(Class
<?
extends SpecimenOrObservationBase
> clazz
, String query
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
526 return defaultService
.search(clazz
, query
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
530 * @param configurator
532 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
535 public Pager
<SpecimenOrObservationBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
536 return defaultService
.findByTitle(configurator
);
545 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
548 public Integer
countByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
549 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
555 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
558 public SpecimenOrObservationBase
load(UUID uuid
) {
559 return defaultService
.load(uuid
);
564 * @param propertyPaths
566 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
569 public SpecimenOrObservationBase
load(UUID uuid
, List
<String
> propertyPaths
) {
570 return defaultService
.load(uuid
, propertyPaths
);
574 * @param configurator
576 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
579 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
580 return defaultService
.countByTitle(configurator
);
585 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
588 public List
<UuidAndTitleCache
<FieldUnit
>> getFieldUnitUuidAndTitleCache() {
589 return defaultService
.getFieldUnitUuidAndTitleCache();
594 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
597 public List
<UuidAndTitleCache
<DerivedUnit
>> getDerivedUnitUuidAndTitleCache() {
598 return defaultService
.getDerivedUnitUuidAndTitleCache();
602 * @param transientObject
604 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
607 public SpecimenOrObservationBase
merge(SpecimenOrObservationBase transientObject
) {
608 return defaultService
.merge(transientObject
);
613 * @param propertyPaths
615 * @throws DerivedUnitFacadeNotSupportedException
616 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
619 public DerivedUnitFacade
getDerivedUnitFacade(DerivedUnit derivedUnit
, List
<String
> propertyPaths
) throws DerivedUnitFacadeNotSupportedException
{
620 return defaultService
.getDerivedUnitFacade(derivedUnit
, propertyPaths
);
631 * @param propertyPaths
633 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
636 public List
<SpecimenOrObservationBase
> listByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
637 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
642 * @param propertyPaths
644 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
647 public List
<DerivedUnitFacade
> listDerivedUnitFacades(DescriptionBase description
, List
<String
> propertyPaths
) {
648 return defaultService
.listDerivedUnitFacades(description
, propertyPaths
);
656 * @param propertyPaths
658 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
661 public <S
extends SpecimenOrObservationBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
662 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
667 * @param includeRelationships
668 * @param associatedTaxon
673 * @param propertyPaths
675 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
678 public <T
extends SpecimenOrObservationBase
> List
<T
> listByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
679 return defaultService
.listByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
683 * @param persistentObject
685 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
688 public UUID
refresh(SpecimenOrObservationBase persistentObject
) {
689 return defaultService
.refresh(persistentObject
);
700 * @param propertyPaths
702 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
705 public List
<SpecimenOrObservationBase
> listByReferenceTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
706 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
714 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
717 public List
<SpecimenOrObservationBase
> rows(String tableName
, int limit
, int start
) {
718 return defaultService
.rows(tableName
, limit
, start
);
722 * @param newInstances
724 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
727 public Map
<UUID
, SpecimenOrObservationBase
> save(Collection
<SpecimenOrObservationBase
> newInstances
) {
728 for(SpecimenOrObservationBase unit
:newInstances
){
736 * @param includeRelationships
737 * @param associatedTaxon
742 * @param propertyPaths
744 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
747 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
748 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
754 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
757 public UUID
save(SpecimenOrObservationBase newInstance
) {
758 units
.add(newInstance
);
763 * @param transientObject
765 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
768 public UUID
saveOrUpdate(SpecimenOrObservationBase transientObject
) {
769 units
.add(transientObject
);
774 * @param transientObjects
776 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
779 public Map
<UUID
, SpecimenOrObservationBase
> saveOrUpdate(Collection
<SpecimenOrObservationBase
> transientObjects
) {
780 for(SpecimenOrObservationBase unit
:transientObjects
){
791 * @param highlightFragments
795 * @param propertyPaths
797 * @throws CorruptIndexException
798 * @throws IOException
799 * @throws ParseException
800 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
803 public Pager
<SearchResult
<SpecimenOrObservationBase
>> findByFullText(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Rectangle boundingBox
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
804 return defaultService
.findByFullText(clazz
, queryString
, boundingBox
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
808 * @param transientObject
810 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
813 public UUID
update(SpecimenOrObservationBase transientObject
) {
814 return defaultService
.update(transientObject
);
819 * @param includeProperties
823 * @param propertyPaths
825 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
828 public List
<SpecimenOrObservationBase
> list(SpecimenOrObservationBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
829 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
834 * @param matchStrategy
835 * @param mergeStrategy
837 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
840 public int deduplicate(Class
<?
extends SpecimenOrObservationBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
841 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
852 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
855 public Pager
<SpecimenOrObservationBase
> findTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
856 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
862 public Collection
<SpecimenOrObservationBase
<?
>> getUnits() {
867 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
870 public Collection
<FieldUnit
> getFieldUnits(UUID derivedUnitUuid
) {
871 return defaultService
.getFieldUnits(derivedUnitUuid
);
875 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
878 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
,
879 Set
<TaxonRelationshipEdge
> includeRelationships
, String taxonUUID
, Integer maxDepth
, Integer pageSize
,
880 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
881 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, taxonUUID
,
882 maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
886 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
889 public boolean moveDerivate(SpecimenOrObservationBase
<?
> from
, SpecimenOrObservationBase
<?
> to
, DerivedUnit derivate
) {
890 return defaultService
.moveDerivate(from
, to
, derivate
);
894 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
897 public boolean moveSequence(DnaSample from
, DnaSample to
, Sequence sequence
) {
898 return defaultService
.moveSequence(from
, to
, sequence
);
902 public List
<String
> isDeletable(SpecimenOrObservationBase object
,
903 DeleteConfiguratorBase config
) {
904 return defaultService
.isDeletable(object
, config
);
908 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
911 public int countDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonbase
) {
912 return defaultService
.countDeterminations(occurence
, taxonbase
);
916 public SpecimenOrObservationBase
findWithoutFlush(UUID uuid
) {
917 return defaultService
.findWithoutFlush(uuid
);
921 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listFieldUnitsByAssociatedTaxon(java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
924 public Collection
<FieldUnit
> listFieldUnitsByAssociatedTaxon(Set
<TaxonRelationshipEdge
> includeRelationships
,
925 Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
,
926 List
<String
> propertyPaths
) {
927 return defaultService
.listFieldUnitsByAssociatedTaxon(includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
931 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assembleDerivateHierarchyDTO(eu.etaxonomy.cdm.model.occurrence.FieldUnit, java.util.UUID)
934 public DerivateHierarchyDTO
assembleDerivateHierarchyDTO(FieldUnit fieldUnit
, UUID associatedTaxonUuid
) {
935 return defaultService
.assembleDerivateHierarchyDTO(fieldUnit
, associatedTaxonUuid
);
939 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getNonCascadedAssociatedElements(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.conversation.ConversationHolder)
942 public Collection
<ICdmBase
> getNonCascadedAssociatedElements(SpecimenOrObservationBase
<?
> specimen
) {
943 return defaultService
.getNonCascadedAssociatedElements(specimen
);
947 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#deleteDerivateHierarchy(eu.etaxonomy.cdm.model.common.ICdmBase)
950 public DeleteResult
deleteDerivateHierarchy(ICdmBase from
, SpecimenDeleteConfigurator config
) {
951 return defaultService
.deleteDerivateHierarchy(from
, config
);
955 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#delete(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator)
958 public DeleteResult
delete(SpecimenOrObservationBase
<?
> specimen
, SpecimenDeleteConfigurator config
) {
959 return defaultService
.delete(specimen
, config
);