3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.HashSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockOptions
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
26 import org
.hibernate
.search
.spatial
.impl
.Rectangle
;
28 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
29 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
30 import eu
.etaxonomy
.cdm
.api
.service
.DeleteResult
;
31 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
33 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
34 import eu
.etaxonomy
.cdm
.api
.service
.dto
.DerivateHierarchyDTO
;
35 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
36 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
37 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
38 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
39 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
40 import eu
.etaxonomy
.cdm
.model
.common
.ICdmBase
;
41 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
42 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
43 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
44 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
45 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
46 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
47 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
48 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
49 import eu
.etaxonomy
.cdm
.model
.location
.Country
;
50 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
51 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
52 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
53 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
54 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivationEvent
;
55 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
56 import eu
.etaxonomy
.cdm
.model
.occurrence
.DeterminationEvent
;
57 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
58 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
59 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
60 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
61 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
62 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
63 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
64 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
65 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
66 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
67 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
68 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
69 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
76 public class TransientOccurenceService
implements IOccurrenceService
{
78 private final IOccurrenceService defaultService
;
79 private final Collection
<SpecimenOrObservationBase
<?
>> units
;
82 * @param defaultService
84 public TransientOccurenceService(IOccurrenceService defaultService
) {
85 this.defaultService
= defaultService
;
86 this.units
= new HashSet
<SpecimenOrObservationBase
<?
>>();
94 * @param propertyPaths
96 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
99 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
100 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
104 * @param annotatedObj
109 * @param propertyPaths
111 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
114 public Pager
<Annotation
> getAnnotations(SpecimenOrObservationBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
115 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
120 * @see eu.etaxonomy.cdm.api.service.IService#clear()
123 public void clear() {
124 defaultService
.clear();
130 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
133 public void lock(SpecimenOrObservationBase t
, LockOptions lockOptions
) {
134 defaultService
.lock(t
, lockOptions
);
140 * @param propertyPaths
141 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
144 public void refresh(SpecimenOrObservationBase t
, LockOptions lockOptions
, List
<String
> propertyPaths
) {
145 defaultService
.refresh(t
, lockOptions
, propertyPaths
);
150 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
153 public void updateTitleCache() {
154 defaultService
.updateTitleCache();
160 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
163 public AuditEventRecord
<SpecimenOrObservationBase
> getNextAuditEvent(SpecimenOrObservationBase t
) {
164 return defaultService
.getNextAuditEvent(t
);
168 * @param annotatableEntity
173 * @param propertyPaths
175 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
178 public Pager
<Marker
> getMarkers(SpecimenOrObservationBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
179 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
185 * @param cacheStrategy
187 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
190 public void updateTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<SpecimenOrObservationBase
> cacheStrategy
, IProgressMonitor monitor
) {
191 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
197 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
200 public AuditEventRecord
<SpecimenOrObservationBase
> getPreviousAuditEvent(SpecimenOrObservationBase t
) {
201 return defaultService
.getPreviousAuditEvent(t
);
207 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
210 public Country
getCountryByIso(String iso639
) {
211 return defaultService
.getCountryByIso(iso639
);
217 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
220 public int count(Class
<?
extends SpecimenOrObservationBase
> clazz
) {
221 return defaultService
.count(clazz
);
227 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
230 public List
<Country
> getCountryByName(String name
) {
231 return defaultService
.getCountryByName(name
);
236 * @param determinedAs
240 * @param propertyPaths
242 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
245 public Pager
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, TaxonBase determinedAs
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
246 return defaultService
.list(type
, determinedAs
, limit
, start
, orderHints
, propertyPaths
);
257 * @param propertyPaths
259 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
262 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(Class
<?
extends SpecimenOrObservationBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
263 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
269 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
272 public SpecimenOrObservationBase
find(LSID lsid
) {
273 return defaultService
.find(lsid
);
277 * @param persistentObject
279 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
282 public DeleteResult
delete(SpecimenOrObservationBase persistentObject
) {
283 return defaultService
.delete(persistentObject
);
291 * @param propertyPaths
293 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
296 public List
<Object
[]> groupMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
297 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
303 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
306 public boolean exists(UUID uuid
) {
307 return defaultService
.exists(uuid
);
314 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
317 public SpecimenOrObservationBase
replace(SpecimenOrObservationBase x
, SpecimenOrObservationBase y
) {
318 return defaultService
.replace(x
, y
);
324 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
327 public List
<SpecimenOrObservationBase
> find(Set
<UUID
> uuidSet
) {
328 return defaultService
.find(uuidSet
);
335 * @param propertyPaths
337 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
340 public Pager
<IdentifiableSource
> getSources(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
341 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
347 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
350 public SpecimenOrObservationBase
find(UUID uuid
) {
351 return defaultService
.find(uuid
);
357 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
360 public SpecimenOrObservationBase
find(int id
) {
361 return defaultService
.find(id
);
368 * @param propertyPaths
370 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
373 public Pager
<Rights
> getRights(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
374 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
381 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
384 public int countMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
) {
385 return defaultService
.countMarkers(clazz
, technical
);
392 * @param propertyPaths
394 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
397 public Pager
<Media
> getMedia(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
398 return defaultService
.getMedia(occurence
, pageSize
, pageNumber
, propertyPaths
);
404 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
407 public List
<SpecimenOrObservationBase
> findById(Set
<Integer
> idSet
) {
408 return defaultService
.findById(idSet
);
416 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
419 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
420 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
425 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
428 public Session
getSession() {
429 return defaultService
.getSession();
434 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
437 public List
<UuidAndTitleCache
<SpecimenOrObservationBase
>> getUuidAndTitleCache() {
438 return defaultService
.getUuidAndTitleCache();
446 * @param propertyPaths
448 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
451 public List
<Object
[]> group(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
452 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
460 * @param propertyPaths
462 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
465 public Pager
<DeterminationEvent
> getDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonBase
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
466 return defaultService
.getDeterminations(occurence
, taxonBase
, pageSize
, pageNumber
, propertyPaths
);
477 * @param propertyPaths
479 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
482 public Pager
<SpecimenOrObservationBase
> findByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
483 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
490 * @param propertyPaths
492 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
495 public Pager
<DerivationEvent
> getDerivationEvents(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
496 return defaultService
.getDerivationEvents(occurence
, pageSize
, pageNumber
, propertyPaths
);
504 * @param propertyPaths
506 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
509 public <S
extends SpecimenOrObservationBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
510 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
519 * @param propertyPaths
521 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
524 public Pager
<SpecimenOrObservationBase
> search(Class
<?
extends SpecimenOrObservationBase
> clazz
, String query
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
525 return defaultService
.search(clazz
, query
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
529 * @param configurator
531 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
534 public Pager
<SpecimenOrObservationBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
535 return defaultService
.findByTitle(configurator
);
544 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
547 public Integer
countByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
548 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
554 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
557 public SpecimenOrObservationBase
load(UUID uuid
) {
558 return defaultService
.load(uuid
);
563 * @param propertyPaths
565 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
568 public SpecimenOrObservationBase
load(UUID uuid
, List
<String
> propertyPaths
) {
569 return defaultService
.load(uuid
, propertyPaths
);
573 * @param configurator
575 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
578 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
579 return defaultService
.countByTitle(configurator
);
584 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
587 public List
<UuidAndTitleCache
<FieldUnit
>> getFieldUnitUuidAndTitleCache() {
588 return defaultService
.getFieldUnitUuidAndTitleCache();
593 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
596 public List
<UuidAndTitleCache
<DerivedUnit
>> getDerivedUnitUuidAndTitleCache() {
597 return defaultService
.getDerivedUnitUuidAndTitleCache();
601 * @param transientObject
603 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
606 public SpecimenOrObservationBase
merge(SpecimenOrObservationBase transientObject
) {
607 return defaultService
.merge(transientObject
);
612 * @param propertyPaths
614 * @throws DerivedUnitFacadeNotSupportedException
615 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
618 public DerivedUnitFacade
getDerivedUnitFacade(DerivedUnit derivedUnit
, List
<String
> propertyPaths
) throws DerivedUnitFacadeNotSupportedException
{
619 return defaultService
.getDerivedUnitFacade(derivedUnit
, propertyPaths
);
630 * @param propertyPaths
632 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
635 public List
<SpecimenOrObservationBase
> listByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
636 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
641 * @param propertyPaths
643 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
646 public List
<DerivedUnitFacade
> listDerivedUnitFacades(DescriptionBase description
, List
<String
> propertyPaths
) {
647 return defaultService
.listDerivedUnitFacades(description
, propertyPaths
);
655 * @param propertyPaths
657 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
660 public <S
extends SpecimenOrObservationBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
661 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
666 * @param includeRelationships
667 * @param associatedTaxon
672 * @param propertyPaths
674 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
677 public <T
extends SpecimenOrObservationBase
> List
<T
> listByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
678 return defaultService
.listByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
682 * @param persistentObject
684 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
687 public UUID
refresh(SpecimenOrObservationBase persistentObject
) {
688 return defaultService
.refresh(persistentObject
);
699 * @param propertyPaths
701 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
704 public List
<SpecimenOrObservationBase
> listByReferenceTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
705 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
713 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
716 public List
<SpecimenOrObservationBase
> rows(String tableName
, int limit
, int start
) {
717 return defaultService
.rows(tableName
, limit
, start
);
721 * @param newInstances
723 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
726 public Map
<UUID
, SpecimenOrObservationBase
> save(Collection
<SpecimenOrObservationBase
> newInstances
) {
727 for(SpecimenOrObservationBase unit
:newInstances
){
735 * @param includeRelationships
736 * @param associatedTaxon
741 * @param propertyPaths
743 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
746 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
747 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
753 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
756 public UUID
save(SpecimenOrObservationBase newInstance
) {
757 units
.add(newInstance
);
762 * @param transientObject
764 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
767 public UUID
saveOrUpdate(SpecimenOrObservationBase transientObject
) {
768 units
.add(transientObject
);
773 * @param transientObjects
775 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
778 public Map
<UUID
, SpecimenOrObservationBase
> saveOrUpdate(Collection
<SpecimenOrObservationBase
> transientObjects
) {
779 for(SpecimenOrObservationBase unit
:transientObjects
){
790 * @param highlightFragments
794 * @param propertyPaths
796 * @throws CorruptIndexException
797 * @throws IOException
798 * @throws ParseException
799 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
802 public Pager
<SearchResult
<SpecimenOrObservationBase
>> findByFullText(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Rectangle boundingBox
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
803 return defaultService
.findByFullText(clazz
, queryString
, boundingBox
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
807 * @param transientObject
809 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
812 public UUID
update(SpecimenOrObservationBase transientObject
) {
813 return defaultService
.update(transientObject
);
818 * @param includeProperties
822 * @param propertyPaths
824 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
827 public List
<SpecimenOrObservationBase
> list(SpecimenOrObservationBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
828 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
833 * @param matchStrategy
834 * @param mergeStrategy
836 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
839 public int deduplicate(Class
<?
extends SpecimenOrObservationBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
840 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
851 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
854 public Pager
<SpecimenOrObservationBase
> findTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
855 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
861 public Collection
<SpecimenOrObservationBase
<?
>> getUnits() {
866 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
869 public Collection
<FieldUnit
> getFieldUnits(UUID derivedUnitUuid
) {
870 return defaultService
.getFieldUnits(derivedUnitUuid
);
874 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
877 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
,
878 Set
<TaxonRelationshipEdge
> includeRelationships
, String taxonUUID
, Integer maxDepth
, Integer pageSize
,
879 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
880 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, taxonUUID
,
881 maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
885 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
888 public boolean moveDerivate(SpecimenOrObservationBase
<?
> from
, SpecimenOrObservationBase
<?
> to
, DerivedUnit derivate
) {
889 return defaultService
.moveDerivate(from
, to
, derivate
);
893 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
896 public boolean moveSequence(DnaSample from
, DnaSample to
, Sequence sequence
) {
897 return defaultService
.moveSequence(from
, to
, sequence
);
901 public List
<String
> isDeletable(SpecimenOrObservationBase object
,
902 DeleteConfiguratorBase config
) {
903 return defaultService
.isDeletable(object
, config
);
907 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
910 public int countDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonbase
) {
911 return defaultService
.countDeterminations(occurence
, taxonbase
);
915 public SpecimenOrObservationBase
findWithoutFlush(UUID uuid
) {
916 return defaultService
.findWithoutFlush(uuid
);
920 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listFieldUnitsByAssociatedTaxon(java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
923 public Collection
<FieldUnit
> listFieldUnitsByAssociatedTaxon(Set
<TaxonRelationshipEdge
> includeRelationships
,
924 Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
,
925 List
<String
> propertyPaths
) {
926 return defaultService
.listFieldUnitsByAssociatedTaxon(includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
930 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#assembleDerivateHierarchyDTO(eu.etaxonomy.cdm.model.occurrence.FieldUnit, java.util.UUID)
933 public DerivateHierarchyDTO
assembleDerivateHierarchyDTO(FieldUnit fieldUnit
, UUID associatedTaxonUuid
) {
934 return defaultService
.assembleDerivateHierarchyDTO(fieldUnit
, associatedTaxonUuid
);
938 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getNonCascadedAssociatedElements(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.api.conversation.ConversationHolder)
941 public Collection
<ICdmBase
> getNonCascadedAssociatedElements(SpecimenOrObservationBase
<?
> specimen
) {
942 return defaultService
.getNonCascadedAssociatedElements(specimen
);
946 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#deleteDerivateHierarchy(eu.etaxonomy.cdm.model.common.ICdmBase)
949 public DeleteResult
deleteDerivateHierarchy(ICdmBase arg0
) {
950 return defaultService
.deleteDerivateHierarchy(arg0
);