3 * Copyright (C) 2007 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
11 package eu
.etaxonomy
.taxeditor
.io
;
14 import java
.io
.InputStream
;
15 import java
.nio
.file
.Files
;
16 import java
.nio
.file
.Path
;
17 import java
.nio
.file
.Paths
;
18 import java
.util
.UUID
;
20 import org
.apache
.commons
.io
.IOUtils
;
21 import org
.eclipse
.core
.runtime
.Assert
;
22 import org
.eclipse
.core
.runtime
.IProgressMonitor
;
23 import org
.eclipse
.core
.runtime
.IStatus
;
24 import org
.eclipse
.core
.runtime
.Status
;
25 import org
.eclipse
.core
.runtime
.jobs
.Job
;
26 import org
.eclipse
.swt
.widgets
.Display
;
28 import eu
.etaxonomy
.cdm
.api
.application
.CdmApplicationState
;
29 import eu
.etaxonomy
.cdm
.api
.application
.ICdmApplicationConfiguration
;
30 import eu
.etaxonomy
.cdm
.common
.monitor
.IRemotingProgressMonitor
;
31 import eu
.etaxonomy
.cdm
.io
.common
.CdmDefaultImport
;
32 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
;
33 import eu
.etaxonomy
.cdm
.io
.common
.IImportConfigurator
.SOURCE_TYPE
;
34 import eu
.etaxonomy
.cdm
.io
.excel
.taxa
.NormalExplicitImportConfigurator
;
35 import eu
.etaxonomy
.cdm
.io
.jaxb
.JaxbImportConfigurator
;
36 import eu
.etaxonomy
.cdm
.io
.reference
.endnote
.in
.EndnoteImportConfigurator
;
37 import eu
.etaxonomy
.cdm
.io
.sdd
.in
.SDDImportConfigurator
;
38 import eu
.etaxonomy
.cdm
.io
.service
.IIOService
;
39 import eu
.etaxonomy
.cdm
.io
.specimen
.abcd206
.in
.Abcd206ImportConfigurator
;
40 import eu
.etaxonomy
.cdm
.io
.specimen
.excel
.in
.SpecimenCdmExcelImportConfigurator
;
41 import eu
.etaxonomy
.cdm
.io
.tcsxml
.in
.TcsXmlImportConfigurator
;
42 import eu
.etaxonomy
.taxeditor
.model
.AbstractUtility
;
43 import eu
.etaxonomy
.taxeditor
.model
.CdmProgressMonitorAdapter
;
44 import eu
.etaxonomy
.taxeditor
.model
.MessagingUtils
;
45 import eu
.etaxonomy
.taxeditor
.operation
.IPostMoniteredOperationEnabled
;
46 import eu
.etaxonomy
.taxeditor
.store
.CdmStore
;
47 import eu
.etaxonomy
.taxeditor
.store
.internal
.TaxeditorStorePlugin
;
51 * ImportHandler class.
55 * @created Sep 11, 2009
58 public class ImportManager
extends AbstractIOManager
<IImportConfigurator
> implements IPostMoniteredOperationEnabled
{
61 * @param applicationConfiguration
63 private ImportManager(ICdmApplicationConfiguration applicationConfiguration
) {
64 super(applicationConfiguration
);
72 * @param applicationConfiguration
74 * {@link eu.etaxonomy.cdm.api.application.CdmApplicationController}
76 * @return a {@link eu.etaxonomy.taxeditor.io.ImportManager} object.
78 public static ImportManager
NewInstance(
79 ICdmApplicationConfiguration applicationConfiguration
) {
80 return new ImportManager(applicationConfiguration
);
84 * Use when importing data into the current application context
87 * a {@link eu.etaxonomy.cdm.io.common.IImportConfigurator}
89 * @return a {@link org.eclipse.core.runtime.jobs.Job} object.
92 protected Job
createIOJob(final IImportConfigurator configurator
) {
93 Assert
.isNotNull(configurator
, "Configuration may not be null");
95 final Display display
= Display
.getDefault();
97 Job job
= new Job("Import: " + configurator
.getClass().getSimpleName()) {
100 protected IStatus
run(IProgressMonitor monitor
) {
101 monitor
.beginTask("Importing data", 100);
102 configurator
.setProgressMonitor(CdmProgressMonitorAdapter
103 .CreateSubMonitor(monitor
, 70));
107 CdmDefaultImport
<IImportConfigurator
> importer
= new CdmDefaultImport
<IImportConfigurator
>();
108 importer
.setCdmAppController(applicationConfiguration
);
112 importer
.invoke(configurator
);
114 } catch (RuntimeException e
) {
115 MessagingUtils
.messageDialog(
116 "Error importing data",
118 "An error occured while"
119 + "importing from source '"
120 + configurator
.getSourceNameString()
122 + "Please check error log for details.", e
);
128 display
.asyncExec(new Runnable() {
132 CdmStore
.getContextManager().notifyContextRefresh();
136 return Status
.OK_STATUS
;
144 public Job
createIOServiceJob(IImportConfigurator configurator
, InputStream is
, SOURCE_TYPE type
) {
147 return createIOServiceJob(configurator
, IOUtils
.toByteArray(is
), type
);
148 } catch (Exception e
) {
149 MessagingUtils
.errorDialog("Error importing input stream",
152 TaxeditorStorePlugin
.PLUGIN_ID
,
159 public Job
createIOServiceJob(IImportConfigurator configurator
, File importFile
, SOURCE_TYPE type
) {
160 Path path
= Paths
.get(importFile
.toURI());
162 return createIOServiceJob(configurator
, Files
.readAllBytes(path
), type
);
163 } catch (Exception e
) {
164 MessagingUtils
.errorDialog("Error importing file",
167 TaxeditorStorePlugin
.PLUGIN_ID
,
174 public Job
createIOServiceJob(final IImportConfigurator configurator
, final byte[] data
, final SOURCE_TYPE type
) {
175 Assert
.isNotNull(configurator
, "Configuration may not be null");
176 final Display display
= Display
.getDefault();
177 Job job
= new Job("Import: " + configurator
.getClass().getSimpleName()) {
180 protected IStatus
run(IProgressMonitor monitor
) {
181 monitor
.beginTask("Importing data", IProgressMonitor
.UNKNOWN
);
182 IIOService ioService
= CdmApplicationState
.getIOService();
184 ioService
.importData(configurator
, data
, type
);
188 display
.asyncExec(new Runnable() {
192 CdmStore
.getContextManager().notifyContextRefresh();
196 return Status
.OK_STATUS
;
204 public void runMoniteredOperation(IImportConfigurator configurator
, InputStream is
, SOURCE_TYPE type
) {
207 runMoniteredOperation(configurator
, IOUtils
.toByteArray(is
), type
);
208 } catch (Exception e
) {
209 MessagingUtils
.errorDialog("Error importing input stream",
212 TaxeditorStorePlugin
.PLUGIN_ID
,
219 public void runMoniteredOperation(IImportConfigurator configurator
, File importFile
, SOURCE_TYPE type
) {
220 Path path
= Paths
.get(importFile
.toURI());
222 runMoniteredOperation(configurator
, Files
.readAllBytes(path
), type
);
223 } catch (Exception e
) {
224 MessagingUtils
.errorDialog("Error importing input stream",
227 TaxeditorStorePlugin
.PLUGIN_ID
,
234 public void runMoniteredOperation(final IImportConfigurator configurator
, final byte[] data
, final SOURCE_TYPE type
) {
235 IIOService ioService
= CdmApplicationState
.getIOService();
236 final UUID uuid
= ioService
.monitImportData(configurator
, data
, type
);
237 Display
.getDefault().asyncExec(new Runnable() {
240 AbstractUtility
.executeMoniteredOperation("Import: " + configurator
.getClass().getSimpleName(),
250 private IImportConfigurator
getConfigurator(TYPE type
) {
251 Assert
.isNotNull(type
, "Type should not be null");
255 return JaxbImportConfigurator
.NewInstance(null, null);
257 return TcsXmlImportConfigurator
.NewInstance(null, null);
259 return EndnoteImportConfigurator
.NewInstance(null, null);
261 return NormalExplicitImportConfigurator
.NewInstance(null, null,
264 return Abcd206ImportConfigurator
.NewInstance(null, null);
266 return SDDImportConfigurator
.NewInstance(null, null);
267 case SpecimenCdmExcel
:
268 return SpecimenCdmExcelImportConfigurator
.NewInstance(null, null);
270 MessagingUtils
.notImplementedMessage(this);
271 throw new IllegalArgumentException("Import not supported yet");
281 * @return a {@link eu.etaxonomy.cdm.io.jaxb.JaxbImportConfigurator} object.
283 public final JaxbImportConfigurator
JaxbConfigurator() {
284 return (JaxbImportConfigurator
) getConfigurator(TYPE
.Jaxb
);
292 * @return a {@link eu.etaxonomy.cdm.io.tcsxml.in.TcsXmlImportConfigurator}
295 public final TcsXmlImportConfigurator
TcsConfigurator() {
296 return (TcsXmlImportConfigurator
) getConfigurator(TYPE
.Tcs
);
301 * EndnoteConfigurator
305 * {@link eu.etaxonomy.cdm.io.reference.endnote.in.EndnoteImportConfigurator}
308 public final EndnoteImportConfigurator
EndnoteConfigurator() {
309 return (EndnoteImportConfigurator
) getConfigurator(TYPE
.Endnote
);
314 * NormalExplicitConfigurator
318 * {@link eu.etaxonomy.cdm.io.excel.taxa.NormalExplicitImportConfigurator}
321 public final NormalExplicitImportConfigurator
NormalExplicitConfigurator() {
322 return (NormalExplicitImportConfigurator
) getConfigurator(TYPE
.Excel_Taxa
);
330 * @return a {@link eu.etaxonomy.cdm.io.sdd.in.SDDImportConfigurator}
333 public final SDDImportConfigurator
SddConfigurator() {
334 return (SDDImportConfigurator
) getConfigurator(TYPE
.Sdd
);
343 * {@link eu.etaxonomy.cdm.io.specimen.abcd206.in.Abcd206ImportConfigurator}
346 public final Abcd206ImportConfigurator
AbcdConfigurator() {
347 return (Abcd206ImportConfigurator
) getConfigurator(TYPE
.Abcd
);
350 public SpecimenCdmExcelImportConfigurator
SpecimenCdmExcelImportConfigurator() {
351 return (SpecimenCdmExcelImportConfigurator
) getConfigurator(TYPE
.SpecimenCdmExcel
);
358 public void postOperation(IRemotingProgressMonitor monitor
) {
359 Display
.getDefault().asyncExec(new Runnable() {
363 CdmStore
.getContextManager().notifyContextRefresh();