eu.etaxonomy.taxeditor.store/src/main/java/eu/etaxonomy/taxeditor/ui/section/occurrence/dna/PrimerGeneralDetailElement.java

   1 /**
   2  * Copyright (C) 2014 EDIT
   3  * European Distributed Institute of Taxonomy
   4  * http://www.e-taxonomy.eu
   5  *
   6  * The contents of this file are subject to the Mozilla Public License Version 1.1
   7  * See LICENSE.TXT at the top of this package for the full license terms.
   8  */
   9 package eu.etaxonomy.taxeditor.ui.section.occurrence.dna;
  10
  11 import eu.etaxonomy.cdm.model.molecular.Primer;
  12 import eu.etaxonomy.cdm.model.molecular.SequenceString;
  13 import eu.etaxonomy.cdm.model.reference.Reference;
  14 import eu.etaxonomy.cdm.model.term.DefinedTerm;
  15 import eu.etaxonomy.cdm.model.term.TermType;
  16 import eu.etaxonomy.taxeditor.store.StoreUtil;
  17 import eu.etaxonomy.taxeditor.ui.combo.term.TermComboElement;
  18 import eu.etaxonomy.taxeditor.ui.element.CdmFormFactory;
  19 import eu.etaxonomy.taxeditor.ui.element.ICdmFormElement;
  20 import eu.etaxonomy.taxeditor.ui.element.LayoutConstants;
  21 import eu.etaxonomy.taxeditor.ui.element.TextWithLabelElement;
  22 import eu.etaxonomy.taxeditor.ui.section.AbstractCdmDetailElement;
  23 import eu.etaxonomy.taxeditor.ui.section.supplemental.AnnotationSection;
  24 import eu.etaxonomy.taxeditor.ui.selection.EntitySelectionElement;
  25
  26 /**
  27  * @author pplitzner
  28  * @date 06.01.2014
  29  */
  30 public class PrimerGeneralDetailElement extends AbstractCdmDetailElement<Primer> {
  31
  32
  33     private TextWithLabelElement textPrimerName;
  34     // we are using a basic text field which is backed up by a Sequence object modelwise.
  35     // This is a bit of a overhead as we may just need the sequence string. This may change in future in both directions:
  36     // either extending this view to support the remaining fields of Sequence or by switching to the more basic SequenceString model element
  37     private TextWithLabelElement textPrimerSequence;
  38     private TermComboElement<DefinedTerm> comboMarker;
  39     private EntitySelectionElement<Reference> selectionReference;
  40
  41     public PrimerGeneralDetailElement(CdmFormFactory formFactory, ICdmFormElement formElement) {
  42         super(formFactory, formElement);
  43     }
  44
  45     @Override
  46     protected void createControls(ICdmFormElement formElement, Primer entity, int style) {
  47         textPrimerName = formFactory.createTextWithLabelElement(formElement, "Primer Name", entity.getLabel(), style);
  48         String sequenceString = null;
  49         if(entity.getSequence()!=null){
  50             sequenceString = entity.getSequence().getString();
  51         }
  52         textPrimerSequence = formFactory.createTextWithLabelElement(formElement, "Primer seq. 5'->3'", sequenceString, style);
  53
  54         comboMarker = formFactory.createDefinedTermComboElement(TermType.DnaMarker, formElement, "DNA Marker", entity.getDnaMarker(), style);
  55
  56         selectionReference = formFactory
  57                 .createSelectionElement(Reference.class,
  58                         formElement, "Reference",
  59                         entity.getPublishedIn(),
  60                         EntitySelectionElement.ALL, style);
  61
  62         AnnotationSection annotationSection = formFactory.createAnnotationSection(formElement, StoreUtil.getSectionStyle(AnnotationSection.class, entity.getClass().getCanonicalName()));
  63         annotationSection.setLayoutData(LayoutConstants.FILL_HORIZONTALLY(2, 1));
  64         annotationSection.setEntity(entity);
  65     }
  66
  67     @Override
  68     public void handleEvent(Object eventSource) {
  69         if(eventSource==textPrimerName){
  70             getEntity().setLabel(textPrimerName.getText());
  71         }
  72         else if(eventSource==comboMarker){
  73             getEntity().setDnaMarker(comboMarker.getSelection());
  74         }
  75         else if(eventSource==textPrimerSequence){
  76             SequenceString sequenceString = getEntity().getSequence();
  77             if(sequenceString==null){
  78                 sequenceString = SequenceString.NewInstance("");
  79                 getEntity().setSequence(sequenceString);
  80             }
  81             sequenceString.setString(textPrimerSequence.getText());
  82         }
  83         else if(eventSource==selectionReference){
  84             getEntity().setPublishedIn(selectionReference.getSelection());
  85         }
  86     }
  87
  88         @Override
  89         public void fillFields() {
  90                 // TODO Auto-generated method stub
  91
  92         }
  93 }