3 * Copyright (C) 2013 EDIT
4 * European Distributed Institute of Taxonomy
5 * http://www.e-taxonomy.eu
7 * The contents of this file are subject to the Mozilla Public License Version 1.1
8 * See LICENSE.TXT at the top of this package for the full license terms.
10 package eu
.etaxonomy
.taxeditor
.editor
.view
.dataimport
.transientServices
;
12 import java
.io
.IOException
;
13 import java
.util
.Collection
;
14 import java
.util
.HashSet
;
15 import java
.util
.List
;
18 import java
.util
.UUID
;
20 import org
.apache
.lucene
.index
.CorruptIndexException
;
21 import org
.apache
.lucene
.queryParser
.ParseException
;
22 import org
.hibernate
.LockMode
;
23 import org
.hibernate
.Session
;
24 import org
.hibernate
.criterion
.Criterion
;
25 import org
.hibernate
.envers
.query
.criteria
.AuditCriterion
;
26 import org
.hibernate
.search
.spatial
.impl
.Rectangle
;
28 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacade
;
29 import eu
.etaxonomy
.cdm
.api
.facade
.DerivedUnitFacadeNotSupportedException
;
30 import eu
.etaxonomy
.cdm
.api
.service
.IOccurrenceService
;
31 import eu
.etaxonomy
.cdm
.api
.service
.config
.DeleteConfiguratorBase
;
32 import eu
.etaxonomy
.cdm
.api
.service
.config
.IIdentifiableEntityServiceConfigurator
;
33 import eu
.etaxonomy
.cdm
.api
.service
.pager
.Pager
;
34 import eu
.etaxonomy
.cdm
.api
.service
.search
.SearchResult
;
35 import eu
.etaxonomy
.cdm
.api
.service
.util
.TaxonRelationshipEdge
;
36 import eu
.etaxonomy
.cdm
.common
.monitor
.IProgressMonitor
;
37 import eu
.etaxonomy
.cdm
.model
.common
.Annotation
;
38 import eu
.etaxonomy
.cdm
.model
.common
.ISourceable
;
39 import eu
.etaxonomy
.cdm
.model
.common
.IdentifiableSource
;
40 import eu
.etaxonomy
.cdm
.model
.common
.LSID
;
41 import eu
.etaxonomy
.cdm
.model
.common
.Language
;
42 import eu
.etaxonomy
.cdm
.model
.common
.Marker
;
43 import eu
.etaxonomy
.cdm
.model
.common
.MarkerType
;
44 import eu
.etaxonomy
.cdm
.model
.common
.UuidAndTitleCache
;
45 import eu
.etaxonomy
.cdm
.model
.description
.DescriptionBase
;
46 import eu
.etaxonomy
.cdm
.model
.location
.Country
;
47 import eu
.etaxonomy
.cdm
.model
.media
.Media
;
48 import eu
.etaxonomy
.cdm
.model
.media
.Rights
;
49 import eu
.etaxonomy
.cdm
.model
.molecular
.DnaSample
;
50 import eu
.etaxonomy
.cdm
.model
.molecular
.Sequence
;
51 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivationEvent
;
52 import eu
.etaxonomy
.cdm
.model
.occurrence
.DerivedUnit
;
53 import eu
.etaxonomy
.cdm
.model
.occurrence
.DeterminationEvent
;
54 import eu
.etaxonomy
.cdm
.model
.occurrence
.FieldUnit
;
55 import eu
.etaxonomy
.cdm
.model
.occurrence
.SpecimenOrObservationBase
;
56 import eu
.etaxonomy
.cdm
.model
.taxon
.Taxon
;
57 import eu
.etaxonomy
.cdm
.model
.taxon
.TaxonBase
;
58 import eu
.etaxonomy
.cdm
.model
.view
.AuditEvent
;
59 import eu
.etaxonomy
.cdm
.model
.view
.AuditEventRecord
;
60 import eu
.etaxonomy
.cdm
.persistence
.dao
.common
.AuditEventSort
;
61 import eu
.etaxonomy
.cdm
.persistence
.query
.Grouping
;
62 import eu
.etaxonomy
.cdm
.persistence
.query
.MatchMode
;
63 import eu
.etaxonomy
.cdm
.persistence
.query
.OrderHint
;
64 import eu
.etaxonomy
.cdm
.strategy
.cache
.common
.IIdentifiableEntityCacheStrategy
;
65 import eu
.etaxonomy
.cdm
.strategy
.match
.IMatchStrategy
;
66 import eu
.etaxonomy
.cdm
.strategy
.merge
.IMergeStrategy
;
73 public class TransientOccurenceService
implements IOccurrenceService
{
75 private final IOccurrenceService defaultService
;
76 private final Collection
<SpecimenOrObservationBase
<?
>> units
;
79 * @param defaultService
81 public TransientOccurenceService(IOccurrenceService defaultService
) {
82 this.defaultService
= defaultService
;
83 this.units
= new HashSet
<SpecimenOrObservationBase
<?
>>();
91 * @param propertyPaths
93 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(eu.etaxonomy.cdm.model.common.VersionableEntity, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
96 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, AuditEventSort sort
, List
<String
> propertyPaths
) {
97 return defaultService
.pageAuditEvents(t
, pageSize
, pageNumber
, sort
, propertyPaths
);
101 * @param annotatedObj
106 * @param propertyPaths
108 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getAnnotations(eu.etaxonomy.cdm.model.common.AnnotatableEntity, eu.etaxonomy.cdm.model.common.MarkerType, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
111 public Pager
<Annotation
> getAnnotations(SpecimenOrObservationBase annotatedObj
, MarkerType status
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
112 return defaultService
.getAnnotations(annotatedObj
, status
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
117 * @see eu.etaxonomy.cdm.api.service.IService#clear()
120 public void clear() {
121 defaultService
.clear();
127 * @see eu.etaxonomy.cdm.api.service.IService#lock(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode)
130 public void lock(SpecimenOrObservationBase t
, LockMode lockMode
) {
131 defaultService
.lock(t
, lockMode
);
137 * @param propertyPaths
138 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase, org.hibernate.LockMode, java.util.List)
141 public void refresh(SpecimenOrObservationBase t
, LockMode lockMode
, List
<String
> propertyPaths
) {
142 defaultService
.refresh(t
, lockMode
, propertyPaths
);
147 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache()
150 public void updateTitleCache() {
151 defaultService
.updateTitleCache();
157 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getNextAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
160 public AuditEventRecord
<SpecimenOrObservationBase
> getNextAuditEvent(SpecimenOrObservationBase t
) {
161 return defaultService
.getNextAuditEvent(t
);
165 * @param annotatableEntity
170 * @param propertyPaths
172 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#getMarkers(eu.etaxonomy.cdm.model.common.AnnotatableEntity, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
175 public Pager
<Marker
> getMarkers(SpecimenOrObservationBase annotatableEntity
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
176 return defaultService
.getMarkers(annotatableEntity
, technical
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
182 * @param cacheStrategy
184 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#updateTitleCache(java.lang.Class, java.lang.Integer, eu.etaxonomy.cdm.strategy.cache.common.IIdentifiableEntityCacheStrategy, eu.etaxonomy.cdm.common.monitor.IProgressMonitor)
187 public void updateTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer stepSize
, IIdentifiableEntityCacheStrategy
<SpecimenOrObservationBase
> cacheStrategy
, IProgressMonitor monitor
) {
188 defaultService
.updateTitleCache(clazz
, stepSize
, cacheStrategy
, monitor
);
194 * @see eu.etaxonomy.cdm.api.service.IVersionableService#getPreviousAuditEvent(eu.etaxonomy.cdm.model.common.VersionableEntity)
197 public AuditEventRecord
<SpecimenOrObservationBase
> getPreviousAuditEvent(SpecimenOrObservationBase t
) {
198 return defaultService
.getPreviousAuditEvent(t
);
204 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByIso(java.lang.String)
207 public Country
getCountryByIso(String iso639
) {
208 return defaultService
.getCountryByIso(iso639
);
214 * @see eu.etaxonomy.cdm.api.service.IService#count(java.lang.Class)
217 public int count(Class
<?
extends SpecimenOrObservationBase
> clazz
) {
218 return defaultService
.count(clazz
);
224 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getCountryByName(java.lang.String)
227 public List
<Country
> getCountryByName(String name
) {
228 return defaultService
.getCountryByName(name
);
233 * @param determinedAs
237 * @param propertyPaths
239 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#list(java.lang.Class, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
242 public Pager
<SpecimenOrObservationBase
> list(Class
<?
extends SpecimenOrObservationBase
> type
, TaxonBase determinedAs
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
243 return defaultService
.list(type
, determinedAs
, limit
, start
, orderHints
, propertyPaths
);
254 * @param propertyPaths
256 * @see eu.etaxonomy.cdm.api.service.IVersionableService#pageAuditEvents(java.lang.Class, eu.etaxonomy.cdm.model.view.AuditEvent, eu.etaxonomy.cdm.model.view.AuditEvent, java.util.List, java.lang.Integer, java.lang.Integer, eu.etaxonomy.cdm.persistence.dao.common.AuditEventSort, java.util.List)
259 public Pager
<AuditEventRecord
<SpecimenOrObservationBase
>> pageAuditEvents(Class
<?
extends SpecimenOrObservationBase
> clazz
, AuditEvent from
, AuditEvent to
, List
<AuditCriterion
> criteria
, Integer pageSize
, Integer pageValue
, AuditEventSort sort
, List
<String
> propertyPaths
) {
260 return defaultService
.pageAuditEvents(clazz
, from
, to
, criteria
, pageSize
, pageValue
, sort
, propertyPaths
);
266 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#find(eu.etaxonomy.cdm.model.common.LSID)
269 public SpecimenOrObservationBase
find(LSID lsid
) {
270 return defaultService
.find(lsid
);
274 * @param persistentObject
276 * @see eu.etaxonomy.cdm.api.service.IService#delete(eu.etaxonomy.cdm.model.common.ICdmBase)
279 public String
delete(SpecimenOrObservationBase persistentObject
) {
280 return defaultService
.delete(persistentObject
);
288 * @param propertyPaths
290 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#groupMarkers(java.lang.Class, java.lang.Boolean, java.lang.Integer, java.lang.Integer, java.util.List)
293 public List
<Object
[]> groupMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
294 return defaultService
.groupMarkers(clazz
, technical
, pageSize
, pageNumber
, propertyPaths
);
300 * @see eu.etaxonomy.cdm.api.service.IService#exists(java.util.UUID)
303 public boolean exists(UUID uuid
) {
304 return defaultService
.exists(uuid
);
311 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#replace(eu.etaxonomy.cdm.model.common.IdentifiableEntity, eu.etaxonomy.cdm.model.common.IdentifiableEntity)
314 public SpecimenOrObservationBase
replace(SpecimenOrObservationBase x
, SpecimenOrObservationBase y
) {
315 return defaultService
.replace(x
, y
);
321 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.Set)
324 public List
<SpecimenOrObservationBase
> find(Set
<UUID
> uuidSet
) {
325 return defaultService
.find(uuidSet
);
332 * @param propertyPaths
334 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSources(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
337 public Pager
<IdentifiableSource
> getSources(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
338 return defaultService
.getSources(t
, pageSize
, pageNumber
, propertyPaths
);
344 * @see eu.etaxonomy.cdm.api.service.IService#find(java.util.UUID)
347 public SpecimenOrObservationBase
find(UUID uuid
) {
348 return defaultService
.find(uuid
);
354 * @see eu.etaxonomy.cdm.api.service.IService#find(int)
357 public SpecimenOrObservationBase
find(int id
) {
358 return defaultService
.find(id
);
365 * @param propertyPaths
367 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getRights(eu.etaxonomy.cdm.model.common.IdentifiableEntity, java.lang.Integer, java.lang.Integer, java.util.List)
370 public Pager
<Rights
> getRights(SpecimenOrObservationBase t
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
371 return defaultService
.getRights(t
, pageSize
, pageNumber
, propertyPaths
);
378 * @see eu.etaxonomy.cdm.api.service.IAnnotatableService#countMarkers(java.lang.Class, java.lang.Boolean)
381 public int countMarkers(Class
<?
extends SpecimenOrObservationBase
> clazz
, Boolean technical
) {
382 return defaultService
.countMarkers(clazz
, technical
);
389 * @param propertyPaths
391 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getMedia(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
394 public Pager
<Media
> getMedia(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
395 return defaultService
.getMedia(occurence
, pageSize
, pageNumber
, propertyPaths
);
401 * @see eu.etaxonomy.cdm.api.service.IService#findById(java.util.Set)
404 public List
<SpecimenOrObservationBase
> findById(Set
<Integer
> idSet
) {
405 return defaultService
.findById(idSet
);
413 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getSourcedObjectByIdInSource(java.lang.Class, java.lang.String, java.lang.String)
416 public ISourceable
getSourcedObjectByIdInSource(Class clazz
, String idInSource
, String idNamespace
) {
417 return defaultService
.getSourcedObjectByIdInSource(clazz
, idInSource
, idNamespace
);
422 * @see eu.etaxonomy.cdm.api.service.IService#getSession()
425 public Session
getSession() {
426 return defaultService
.getSession();
431 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#getUuidAndTitleCache()
434 public List
<UuidAndTitleCache
<SpecimenOrObservationBase
>> getUuidAndTitleCache() {
435 return defaultService
.getUuidAndTitleCache();
443 * @param propertyPaths
445 * @see eu.etaxonomy.cdm.api.service.IService#group(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
448 public List
<Object
[]> group(Class
<?
extends SpecimenOrObservationBase
> clazz
, Integer limit
, Integer start
, List
<Grouping
> groups
, List
<String
> propertyPaths
) {
449 return defaultService
.group(clazz
, limit
, start
, groups
, propertyPaths
);
457 * @param propertyPaths
459 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase, java.lang.Integer, java.lang.Integer, java.util.List)
462 public Pager
<DeterminationEvent
> getDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonBase
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
463 return defaultService
.getDeterminations(occurence
, taxonBase
, pageSize
, pageNumber
, propertyPaths
);
474 * @param propertyPaths
476 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
479 public Pager
<SpecimenOrObservationBase
> findByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
480 return defaultService
.findByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
487 * @param propertyPaths
489 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivationEvents(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, java.lang.Integer, java.lang.Integer, java.util.List)
492 public Pager
<DerivationEvent
> getDerivationEvents(SpecimenOrObservationBase occurence
, Integer pageSize
, Integer pageNumber
, List
<String
> propertyPaths
) {
493 return defaultService
.getDerivationEvents(occurence
, pageSize
, pageNumber
, propertyPaths
);
501 * @param propertyPaths
503 * @see eu.etaxonomy.cdm.api.service.IService#list(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
506 public <S
extends SpecimenOrObservationBase
> List
<S
> list(Class
<S
> type
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
507 return defaultService
.list(type
, limit
, start
, orderHints
, propertyPaths
);
516 * @param propertyPaths
518 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#search(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
521 public Pager
<SpecimenOrObservationBase
> search(Class
<?
extends SpecimenOrObservationBase
> clazz
, String query
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
522 return defaultService
.search(clazz
, query
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
526 * @param configurator
528 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
531 public Pager
<SpecimenOrObservationBase
> findByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
532 return defaultService
.findByTitle(configurator
);
541 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List)
544 public Integer
countByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
) {
545 return defaultService
.countByTitle(clazz
, queryString
, matchmode
, criteria
);
551 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID)
554 public SpecimenOrObservationBase
load(UUID uuid
) {
555 return defaultService
.load(uuid
);
560 * @param propertyPaths
562 * @see eu.etaxonomy.cdm.api.service.IService#load(java.util.UUID, java.util.List)
565 public SpecimenOrObservationBase
load(UUID uuid
, List
<String
> propertyPaths
) {
566 return defaultService
.load(uuid
, propertyPaths
);
570 * @param configurator
572 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#countByTitle(eu.etaxonomy.cdm.api.service.config.IIdentifiableEntityServiceConfigurator)
575 public Integer
countByTitle(IIdentifiableEntityServiceConfigurator
<SpecimenOrObservationBase
> configurator
) {
576 return defaultService
.countByTitle(configurator
);
581 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnitUuidAndTitleCache()
584 public List
<UuidAndTitleCache
<FieldUnit
>> getFieldUnitUuidAndTitleCache() {
585 return defaultService
.getFieldUnitUuidAndTitleCache();
590 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitUuidAndTitleCache()
593 public List
<UuidAndTitleCache
<DerivedUnit
>> getDerivedUnitUuidAndTitleCache() {
594 return defaultService
.getDerivedUnitUuidAndTitleCache();
598 * @param transientObject
600 * @see eu.etaxonomy.cdm.api.service.IService#merge(eu.etaxonomy.cdm.model.common.ICdmBase)
603 public SpecimenOrObservationBase
merge(SpecimenOrObservationBase transientObject
) {
604 return defaultService
.merge(transientObject
);
609 * @param propertyPaths
611 * @throws DerivedUnitFacadeNotSupportedException
612 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getDerivedUnitFacade(eu.etaxonomy.cdm.model.occurrence.DerivedUnit, java.util.List)
615 public DerivedUnitFacade
getDerivedUnitFacade(DerivedUnit derivedUnit
, List
<String
> propertyPaths
) throws DerivedUnitFacadeNotSupportedException
{
616 return defaultService
.getDerivedUnitFacade(derivedUnit
, propertyPaths
);
627 * @param propertyPaths
629 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
632 public List
<SpecimenOrObservationBase
> listByTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
633 return defaultService
.listByTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
638 * @param propertyPaths
640 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listDerivedUnitFacades(eu.etaxonomy.cdm.model.description.DescriptionBase, java.util.List)
643 public List
<DerivedUnitFacade
> listDerivedUnitFacades(DescriptionBase description
, List
<String
> propertyPaths
) {
644 return defaultService
.listDerivedUnitFacades(description
, propertyPaths
);
652 * @param propertyPaths
654 * @see eu.etaxonomy.cdm.api.service.IService#page(java.lang.Class, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
657 public <S
extends SpecimenOrObservationBase
> Pager
<S
> page(Class
<S
> type
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
658 return defaultService
.page(type
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
663 * @param includeRelationships
664 * @param associatedTaxon
669 * @param propertyPaths
671 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#listByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
674 public <T
extends SpecimenOrObservationBase
> List
<T
> listByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
675 return defaultService
.listByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
679 * @param persistentObject
681 * @see eu.etaxonomy.cdm.api.service.IService#refresh(eu.etaxonomy.cdm.model.common.ICdmBase)
684 public UUID
refresh(SpecimenOrObservationBase persistentObject
) {
685 return defaultService
.refresh(persistentObject
);
696 * @param propertyPaths
698 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#listByReferenceTitle(java.lang.Class, java.lang.String, eu.etaxonomy.cdm.persistence.query.MatchMode, java.util.List, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
701 public List
<SpecimenOrObservationBase
> listByReferenceTitle(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, MatchMode matchmode
, List
<Criterion
> criteria
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
702 return defaultService
.listByReferenceTitle(clazz
, queryString
, matchmode
, criteria
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
710 * @see eu.etaxonomy.cdm.api.service.IService#rows(java.lang.String, int, int)
713 public List
<SpecimenOrObservationBase
> rows(String tableName
, int limit
, int start
) {
714 return defaultService
.rows(tableName
, limit
, start
);
718 * @param newInstances
720 * @see eu.etaxonomy.cdm.api.service.IService#save(java.util.Collection)
723 public Map
<UUID
, SpecimenOrObservationBase
> save(Collection
<SpecimenOrObservationBase
> newInstances
) {
724 for(SpecimenOrObservationBase unit
:newInstances
){
732 * @param includeRelationships
733 * @param associatedTaxon
738 * @param propertyPaths
740 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, eu.etaxonomy.cdm.model.taxon.Taxon, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
743 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
, Set
<TaxonRelationshipEdge
> includeRelationships
, Taxon associatedTaxon
, Integer maxDepth
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
744 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, associatedTaxon
, maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
750 * @see eu.etaxonomy.cdm.api.service.IService#save(eu.etaxonomy.cdm.model.common.ICdmBase)
753 public UUID
save(SpecimenOrObservationBase newInstance
) {
754 units
.add(newInstance
);
759 * @param transientObject
761 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(eu.etaxonomy.cdm.model.common.ICdmBase)
764 public UUID
saveOrUpdate(SpecimenOrObservationBase transientObject
) {
765 units
.add(transientObject
);
770 * @param transientObjects
772 * @see eu.etaxonomy.cdm.api.service.IService#saveOrUpdate(java.util.Collection)
775 public Map
<UUID
, SpecimenOrObservationBase
> saveOrUpdate(Collection
<SpecimenOrObservationBase
> transientObjects
) {
776 for(SpecimenOrObservationBase unit
:transientObjects
){
787 * @param highlightFragments
791 * @param propertyPaths
793 * @throws CorruptIndexException
794 * @throws IOException
795 * @throws ParseException
796 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#findByFullText(java.lang.Class, java.lang.String, org.hibernate.search.spatial.impl.Rectangle, java.util.List, boolean, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
799 public Pager
<SearchResult
<SpecimenOrObservationBase
>> findByFullText(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Rectangle boundingBox
, List
<Language
> languages
, boolean highlightFragments
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) throws CorruptIndexException
, IOException
, ParseException
{
800 return defaultService
.findByFullText(clazz
, queryString
, boundingBox
, languages
, highlightFragments
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
804 * @param transientObject
806 * @see eu.etaxonomy.cdm.api.service.IService#update(eu.etaxonomy.cdm.model.common.ICdmBase)
809 public UUID
update(SpecimenOrObservationBase transientObject
) {
810 return defaultService
.update(transientObject
);
815 * @param includeProperties
819 * @param propertyPaths
821 * @see eu.etaxonomy.cdm.api.service.IService#list(eu.etaxonomy.cdm.model.common.ICdmBase, java.util.Set, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
824 public List
<SpecimenOrObservationBase
> list(SpecimenOrObservationBase example
, Set
<String
> includeProperties
, Integer limit
, Integer start
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
825 return defaultService
.list(example
, includeProperties
, limit
, start
, orderHints
, propertyPaths
);
830 * @param matchStrategy
831 * @param mergeStrategy
833 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#deduplicate(java.lang.Class, eu.etaxonomy.cdm.strategy.match.IMatchStrategy, eu.etaxonomy.cdm.strategy.merge.IMergeStrategy)
836 public int deduplicate(Class
<?
extends SpecimenOrObservationBase
> clazz
, IMatchStrategy matchStrategy
, IMergeStrategy mergeStrategy
) {
837 return defaultService
.deduplicate(clazz
, matchStrategy
, mergeStrategy
);
848 * @see eu.etaxonomy.cdm.api.service.IIdentifiableEntityService#findTitleCache(java.lang.Class, java.lang.String, java.lang.Integer, java.lang.Integer, java.util.List, eu.etaxonomy.cdm.persistence.query.MatchMode)
851 public Pager
<SpecimenOrObservationBase
> findTitleCache(Class
<?
extends SpecimenOrObservationBase
> clazz
, String queryString
, Integer pageSize
, Integer pageNumber
, List
<OrderHint
> orderHints
, MatchMode matchMode
) {
852 return defaultService
.findTitleCache(clazz
, queryString
, pageSize
, pageNumber
, orderHints
, matchMode
);
858 public Collection
<SpecimenOrObservationBase
<?
>> getUnits() {
863 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#getFieldUnits(java.util.UUID)
866 public Collection
<FieldUnit
> getFieldUnits(UUID derivedUnitUuid
) {
867 return defaultService
.getFieldUnits(derivedUnitUuid
);
871 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#pageByAssociatedTaxon(java.lang.Class, java.util.Set, java.lang.String, java.lang.Integer, java.lang.Integer, java.lang.Integer, java.util.List, java.util.List)
874 public <T
extends SpecimenOrObservationBase
> Pager
<T
> pageByAssociatedTaxon(Class
<T
> type
,
875 Set
<TaxonRelationshipEdge
> includeRelationships
, String taxonUUID
, Integer maxDepth
, Integer pageSize
,
876 Integer pageNumber
, List
<OrderHint
> orderHints
, List
<String
> propertyPaths
) {
877 return defaultService
.pageByAssociatedTaxon(type
, includeRelationships
, taxonUUID
,
878 maxDepth
, pageSize
, pageNumber
, orderHints
, propertyPaths
);
882 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveDerivate(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.occurrence.DerivedUnit)
885 public boolean moveDerivate(SpecimenOrObservationBase
<?
> from
, SpecimenOrObservationBase
<?
> to
, DerivedUnit derivate
) {
886 return defaultService
.moveDerivate(from
, to
, derivate
);
890 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#moveSequence(eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.DnaSample, eu.etaxonomy.cdm.model.molecular.Sequence)
893 public boolean moveSequence(DnaSample from
, DnaSample to
, Sequence sequence
) {
894 return defaultService
.moveSequence(from
, to
, sequence
);
898 public List
<String
> isDeletable(SpecimenOrObservationBase object
,
899 DeleteConfiguratorBase config
) {
900 return defaultService
.isDeletable(object
, config
);
904 * @see eu.etaxonomy.cdm.api.service.IOccurrenceService#countDeterminations(eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase, eu.etaxonomy.cdm.model.taxon.TaxonBase)
907 public int countDeterminations(SpecimenOrObservationBase occurence
, TaxonBase taxonbase
) {
908 return defaultService
.countDeterminations(occurence
, taxonbase
);
912 public SpecimenOrObservationBase
findWithoutFlush(UUID uuid
) {
913 return defaultService
.findWithoutFlush(uuid
);