cdmlib.git
12 years ago[maven-release-plugin] prepare release cdmlib-parent-3.0.11 root/tags/cdmlib/cdmlib-parent-3.0.11 cdmlib-parent-3.0.11
edit-jenkins [Wed, 27 Jun 2012 12:18:28 +0000 (12:18 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.11

12 years agologging for missing extension/marker type
Andreas Müller [Tue, 26 Jun 2012 17:51:35 +0000 (17:51 +0000)]
logging for missing extension/marker type

12 years agotaxon relation validation for concept relationships
Andreas Müller [Tue, 26 Jun 2012 17:19:03 +0000 (17:19 +0000)]
taxon relation validation for concept relationships

12 years agobugfix for nomStatusRefs
Andreas Müller [Tue, 26 Jun 2012 17:12:02 +0000 (17:12 +0000)]
bugfix for nomStatusRefs

12 years agoadd isNoQuotes flag to allow for possibility of ignoring the 'fieldsEnclosedBy' char...
Cherian Mathew [Tue, 26 Jun 2012 16:35:36 +0000 (16:35 +0000)]
add isNoQuotes flag to allow for possibility of ignoring the 'fieldsEnclosedBy' char in the opcsv reader.

12 years agoexception handling for missing occurrence tables in BM import
Andreas Müller [Tue, 26 Jun 2012 15:26:07 +0000 (15:26 +0000)]
exception handling for missing occurrence tables in BM import

12 years agominor
Andreas Müller [Tue, 26 Jun 2012 14:58:50 +0000 (14:58 +0000)]
minor

12 years agocode cosmetics
Andreas Kohlbecker [Tue, 26 Jun 2012 14:55:27 +0000 (14:55 +0000)]
code cosmetics

12 years agomore tests and features for #476: Implement free-text search methods for TaxonBase...
Andreas Kohlbecker [Tue, 26 Jun 2012 14:43:55 +0000 (14:43 +0000)]
more tests and features for #476: Implement free-text search methods for TaxonBase and TextData

12 years agoupdate mailing lists in cdmlib site doc (#2928)
Andreas Müller [Tue, 26 Jun 2012 14:21:54 +0000 (14:21 +0000)]
update mailing lists in cdmlib site doc (#2928)

12 years agoimplement toString for CdmDatasource
Andreas Müller [Mon, 25 Jun 2012 11:29:10 +0000 (11:29 +0000)]
implement toString for CdmDatasource

12 years agochanges concerning creation of inferred synonyms
Katja Luther [Mon, 25 Jun 2012 08:37:56 +0000 (08:37 +0000)]
changes concerning creation of inferred synonyms

12 years agomade 'relatedFrom' and 'relatedTo' getter/setter methods public
Cherian Mathew [Fri, 22 Jun 2012 13:39:37 +0000 (13:39 +0000)]
made 'relatedFrom' and 'relatedTo' getter/setter methods public

12 years agoadded declaration and definition of 'findNamesByNameCache' method, which is essential...
Cherian Mathew [Fri, 22 Jun 2012 13:38:38 +0000 (13:38 +0000)]
added declaration and definition of 'findNamesByNameCache' method, which is essentially a copy of the 'findNamesByTitleCache' except that it does a search on nameCache.

12 years ago- corrected DwcTaxonCsv2CdmTaxonConverter to do perform regular expression check
Cherian Mathew [Fri, 22 Jun 2012 13:37:05 +0000 (13:37 +0000)]
- corrected DwcTaxonCsv2CdmTaxonConverter to do perform regular expression check
- added misapplied name check in DwcTaxonCsv2CdmTaxonRelationConverter to add taxon relationship

12 years agoupdated controller and related dtos to,
Cherian Mathew [Fri, 22 Jun 2012 13:34:13 +0000 (13:34 +0000)]
updated controller and related dtos to,
- add name cache search feature
- correct relationship type representation

12 years agominor
Andreas Müller [Fri, 22 Jun 2012 13:05:37 +0000 (13:05 +0000)]
minor

12 years agoadding method to find taxa by a list of given uuids
Andreas Kohlbecker [Fri, 22 Jun 2012 09:05:29 +0000 (09:05 +0000)]
adding method to find taxa by a list of given uuids

12 years agoprovisional bugfixing to allow JAXB import to run in Editor environment
Andreas Müller [Wed, 20 Jun 2012 18:07:58 +0000 (18:07 +0000)]
provisional bugfixing to allow JAXB import to run in Editor environment

12 years agoallow omit term loading for certain imports
Andreas Müller [Wed, 20 Jun 2012 17:35:47 +0000 (17:35 +0000)]
allow omit term loading for certain imports

12 years agofixing problem with TaxonServiceImplTest which ocurred only on my machine. The test...
Andreas Kohlbecker [Wed, 20 Jun 2012 12:41:29 +0000 (12:41 +0000)]
fixing problem with TaxonServiceImplTest which ocurred only on my machine. The test chain with lead to the error was:
mvn -Dtest=TaxonNodeServiceImplTest,TaxonServiceImplBusinessTest,TaxonServiceSearchTest,TaxonServiceImplTest test

12 years ago[part2/2] more tests for #476: Implement free-text search methods for TaxonBase and...
Andreas Kohlbecker [Wed, 20 Jun 2012 09:49:27 +0000 (09:49 +0000)]
[part2/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData

12 years ago[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and...
Andreas Kohlbecker [Wed, 20 Jun 2012 09:48:11 +0000 (09:48 +0000)]
[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData

12 years ago[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and...
Andreas Kohlbecker [Wed, 20 Jun 2012 09:47:56 +0000 (09:47 +0000)]
[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData

12 years agoremoving @Override from interface implementation
Andreas Kohlbecker [Wed, 20 Jun 2012 06:24:32 +0000 (06:24 +0000)]
removing @Override from interface implementation

12 years agoimprove term title cache generation -> test
Andreas Müller [Tue, 19 Jun 2012 18:50:47 +0000 (18:50 +0000)]
improve term title cache generation -> test

12 years agoimprove term title cache generation
Andreas Müller [Tue, 19 Jun 2012 18:03:28 +0000 (18:03 +0000)]
improve term title cache generation

12 years agofixing typo in language SPANISH_CASTILIAN & more tests for # 476: Implement free...
Andreas Kohlbecker [Tue, 19 Jun 2012 15:58:06 +0000 (15:58 +0000)]
fixing typo in language SPANISH_CASTILIAN & more tests for # 476: Implement free-text search methods for TaxonBase and TextData & indexing uuids

12 years agofixing typo in language SPANISH_CASTILIAN
Andreas Kohlbecker [Tue, 19 Jun 2012 15:56:44 +0000 (15:56 +0000)]
fixing typo in language SPANISH_CASTILIAN

12 years agofixing test with had error due to error prone and misleading instance method
Andreas Kohlbecker [Tue, 19 Jun 2012 15:32:36 +0000 (15:32 +0000)]
fixing test with had error due to error prone and misleading instance method

12 years agofixed # 476: Implement free-text search methods for TaxonBase and TextData
Andreas Kohlbecker [Tue, 19 Jun 2012 14:24:42 +0000 (14:24 +0000)]
fixed # 476: Implement free-text search methods for TaxonBase and TextData
http://dev.e-taxonomy.eu/trac/ticket/476

12 years agoremoving error prone and misleading instance method
Andreas Kohlbecker [Tue, 19 Jun 2012 13:52:24 +0000 (13:52 +0000)]
removing error prone and misleading instance method

12 years agominor
Andreas Müller [Fri, 15 Jun 2012 14:43:09 +0000 (14:43 +0000)]
minor

12 years agoenable omit termloading again
Andreas Müller [Fri, 15 Jun 2012 14:06:50 +0000 (14:06 +0000)]
enable omit termloading again

12 years agorefactor update title cache
Andreas Müller [Fri, 15 Jun 2012 14:06:19 +0000 (14:06 +0000)]
refactor update title cache

12 years agochange logging level for JAXB import
Andreas Müller [Fri, 15 Jun 2012 12:02:46 +0000 (12:02 +0000)]
change logging level for JAXB import

12 years agosecurity stuff
Katja Luther [Fri, 15 Jun 2012 11:03:28 +0000 (11:03 +0000)]
security stuff

12 years agocomments for method getParentLogger
Cherian Mathew [Fri, 15 Jun 2012 10:18:29 +0000 (10:18 +0000)]
comments for method getParentLogger

12 years agocomment for methods get/setObject
Cherian Mathew [Fri, 15 Jun 2012 10:18:09 +0000 (10:18 +0000)]
comment for methods get/setObject

12 years agoremoved @Override since it is incompatible with Java 6
Cherian Mathew [Fri, 15 Jun 2012 10:17:14 +0000 (10:17 +0000)]
removed @Override since it is incompatible with Java 6

12 years agoremoved @Override since it is incompatible with Java 7
Cherian Mathew [Fri, 15 Jun 2012 10:13:29 +0000 (10:13 +0000)]
removed @Override since it is incompatible with Java 7

12 years agoadd 1 method to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:46:22 +0000 (09:46 +0000)]
add 1 method to be compliant with Java 7

12 years agoCorrected mistake in END wildcard option
Cherian Mathew [Fri, 15 Jun 2012 09:41:46 +0000 (09:41 +0000)]
Corrected mistake in END wildcard option

12 years agobugfixes in security interceptor
Katja Luther [Fri, 15 Jun 2012 09:40:00 +0000 (09:40 +0000)]
bugfixes in security interceptor

12 years agoadd the cascading from TaxonDescription to its taxon again
Katja Luther [Fri, 15 Jun 2012 09:39:09 +0000 (09:39 +0000)]
add the cascading from TaxonDescription to its taxon again

12 years ago(no commit message)
Katja Luther [Fri, 15 Jun 2012 09:37:46 +0000 (09:37 +0000)]

12 years agoadd 2 methods to ResultSetProxy to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:30:05 +0000 (09:30 +0000)]
add 2 methods to ResultSetProxy to be compliant with Java 7

12 years agoadding debug logging
Andreas Kohlbecker [Thu, 14 Jun 2012 11:44:45 +0000 (11:44 +0000)]
adding debug logging

12 years agomake update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:15:40 +0000 (11:15 +0000)]
make update title cache writable

12 years agomake update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:12:54 +0000 (11:12 +0000)]
make update title cache writable

12 years agominor doc
Andreas Müller [Thu, 14 Jun 2012 10:10:24 +0000 (10:10 +0000)]
minor doc

12 years agominor
Andreas Müller [Thu, 14 Jun 2012 09:46:19 +0000 (09:46 +0000)]
minor

12 years agouseSourceRefAsSec for Dwc-A in
Andreas Müller [Wed, 13 Jun 2012 15:04:21 +0000 (15:04 +0000)]
useSourceRefAsSec for Dwc-A in

12 years agorefactor markup import, separate classes
Andreas Müller [Wed, 13 Jun 2012 15:03:32 +0000 (15:03 +0000)]
refactor markup import, separate classes

12 years agorechanged the pom
Katja Luther [Wed, 13 Jun 2012 14:23:43 +0000 (14:23 +0000)]
rechanged the pom

12 years ago(no commit message)
Katja Luther [Wed, 13 Jun 2012 13:51:49 +0000 (13:51 +0000)]

12 years agofix for NPE in TaxonNodeByNameComparator, #2912
Andreas Müller [Tue, 12 Jun 2012 15:06:19 +0000 (15:06 +0000)]
fix for NPE in TaxonNodeByNameComparator, #2912

12 years agomake source reference title configurable
Andreas Müller [Mon, 11 Jun 2012 09:54:30 +0000 (09:54 +0000)]
make source reference title configurable

12 years agofixing NPE in Dwc-A import
Andreas Müller [Mon, 11 Jun 2012 08:53:04 +0000 (08:53 +0000)]
fixing NPE in Dwc-A import

12 years agominor debugging
Andreas Müller [Mon, 11 Jun 2012 08:44:03 +0000 (08:44 +0000)]
minor debugging

12 years agochanging server ip to server name in pom
Andreas Kohlbecker [Mon, 11 Jun 2012 07:51:33 +0000 (07:51 +0000)]
changing server ip to server name in pom

12 years agominor
Andreas Müller [Fri, 8 Jun 2012 11:31:28 +0000 (11:31 +0000)]
minor

12 years agobugfix for wrong http anchor replacement
Andreas Müller [Thu, 7 Jun 2012 17:11:46 +0000 (17:11 +0000)]
bugfix for wrong http anchor replacement

12 years agofixing minor bug
Andreas Kohlbecker [Thu, 7 Jun 2012 14:11:39 +0000 (14:11 +0000)]
fixing minor bug

12 years agofixing test data
Andreas Kohlbecker [Thu, 7 Jun 2012 13:54:09 +0000 (13:54 +0000)]
fixing test data

12 years agoremove commented code
Andreas Müller [Thu, 7 Jun 2012 10:14:01 +0000 (10:14 +0000)]
remove commented code

12 years agominor
Andreas Müller [Thu, 7 Jun 2012 10:08:54 +0000 (10:08 +0000)]
minor

12 years agofindByDescriptionElementFullText implemented an hibernate search related tests fixed
Andreas Kohlbecker [Thu, 7 Jun 2012 09:59:34 +0000 (09:59 +0000)]
findByDescriptionElementFullText implemented an hibernate search related tests fixed

12 years agoObjectChange mapper depending on input class
Andreas Müller [Thu, 7 Jun 2012 09:30:50 +0000 (09:30 +0000)]
ObjectChange mapper depending on input class

12 years agoadd additional features for EM to BM import
Andreas Müller [Thu, 7 Jun 2012 09:29:43 +0000 (09:29 +0000)]
add additional features for EM to BM import

12 years agobugfix for features with missing uuid in BM import
Andreas Müller [Thu, 7 Jun 2012 09:20:10 +0000 (09:20 +0000)]
bugfix for features with missing uuid in BM import

12 years agofixed uuid for E+M maps feature
Andreas Müller [Wed, 6 Jun 2012 13:24:55 +0000 (13:24 +0000)]
fixed uuid for E+M maps feature

12 years agoSecurityInterceptor added
Katja Luther [Wed, 6 Jun 2012 11:30:37 +0000 (11:30 +0000)]
SecurityInterceptor added

12 years agohandle links to maps as facts in BM correctly during export to CDM
Andreas Müller [Wed, 6 Jun 2012 11:20:52 +0000 (11:20 +0000)]
handle links to maps as facts in BM correctly during export to CDM

12 years agoAdding PermissionEvaluator and helper classes
Katja Luther [Wed, 6 Jun 2012 11:16:42 +0000 (11:16 +0000)]
Adding PermissionEvaluator and helper classes

12 years agobugfix for missing facts in BM import and refactoring in BM facts import
Andreas Müller [Mon, 4 Jun 2012 13:36:51 +0000 (13:36 +0000)]
bugfix for missing facts in BM import and refactoring in BM facts import

12 years agoimplement sublusus and some remaining issues from taxon status change for PESI export
Andreas Müller [Fri, 1 Jun 2012 16:00:36 +0000 (16:00 +0000)]
implement sublusus and some remaining issues from taxon status change for PESI export

12 years agobugfix for problems with emCommonName import unmatched areas
Andreas Müller [Fri, 1 Jun 2012 12:32:33 +0000 (12:32 +0000)]
bugfix for problems with emCommonName import unmatched areas

12 years agoimplement alternative rank labels for BM, #2811
Andreas Müller [Fri, 1 Jun 2012 11:43:23 +0000 (11:43 +0000)]
implement alternative rank labels for BM, #2811

12 years agomake some uuids public
Andreas Müller [Fri, 1 Jun 2012 11:24:05 +0000 (11:24 +0000)]
make some uuids public

12 years agofix tests for PolytomousKeyNodes, #2892
Andreas Müller [Wed, 30 May 2012 13:24:25 +0000 (13:24 +0000)]
fix tests for PolytomousKeyNodes, #2892

12 years agobugfix for PolytomousKeyNode numbering, #2892
Andreas Müller [Wed, 30 May 2012 12:16:33 +0000 (12:16 +0000)]
bugfix for PolytomousKeyNode numbering, #2892

12 years agoupdate Markup import for F. Guianas
Andreas Müller [Wed, 30 May 2012 11:46:47 +0000 (11:46 +0000)]
update Markup import for F. Guianas

12 years agominor
Andreas Müller [Fri, 25 May 2012 16:47:24 +0000 (16:47 +0000)]
minor

12 years agothe exception because of the missing profiling agent is not propagated, only a logger...
Katja Luther [Thu, 24 May 2012 11:18:40 +0000 (11:18 +0000)]
the exception because of the missing profiling agent is not propagated, only a logger message will be written

12 years agobugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:13:51 +0000 (11:13 +0000)]
bugfix for autonym authorship #2888

12 years agobugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:10:15 +0000 (11:10 +0000)]
bugfix for autonym authorship #2888

12 years agoCorrect handling for multiple author teams (replace & by , )
Andreas Müller [Wed, 23 May 2012 16:43:28 +0000 (16:43 +0000)]
Correct handling for multiple author teams (replace & by , )

12 years agoAdded property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name...
l.morris [Wed, 23 May 2012 15:35:38 +0000 (15:35 +0000)]
Added property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name/taxon service so that the appropriate XSLT is applied to XML in the web browser.

12 years agofix misspelling for warning
Andreas Müller [Tue, 22 May 2012 15:52:52 +0000 (15:52 +0000)]
fix misspelling for warning

12 years agolatest updates to markup import for FdG
Andreas Müller [Tue, 22 May 2012 15:28:54 +0000 (15:28 +0000)]
latest updates to markup import for FdG

12 years agoAdded citation for homotypic synonyms. Modified citation to include only author surna...
l.morris [Tue, 22 May 2012 13:26:30 +0000 (13:26 +0000)]
Added citation for homotypic synonyms. Modified citation to include only author surnames, rather than synonyms in the PDF print output.

12 years agobugfix for protected name title caches in BM import
Andreas Müller [Tue, 22 May 2012 11:54:24 +0000 (11:54 +0000)]
bugfix for protected name title caches in BM import

12 years agominor
Andreas Müller [Tue, 22 May 2012 10:56:36 +0000 (10:56 +0000)]
minor

12 years agoremove deprecated method
Andreas Müller [Mon, 21 May 2012 16:45:22 +0000 (16:45 +0000)]
remove deprecated method

12 years agodebugging for precision
Andreas Müller [Mon, 21 May 2012 14:40:06 +0000 (14:40 +0000)]
debugging for precision

12 years ago[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 8 May 2012 10:02:32 +0000 (10:02 +0000)]
[maven-release-plugin] prepare for next development iteration

12 years ago[maven-release-plugin] prepare release cdmlib-parent-3.0.10 root/tags/cdmlib/cdmlib-parent-3.0.10 cdmlib-parent-3.0.10
edit-jenkins [Tue, 8 May 2012 10:02:30 +0000 (10:02 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.10

12 years agofixing #2879 (Error when using the remote webservice function find NamebyNames)
Andreas Kohlbecker [Mon, 7 May 2012 15:48:53 +0000 (15:48 +0000)]
fixing #2879 (Error when using the remote webservice function find NamebyNames)

12 years agomerging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit
Andreas Kohlbecker [Mon, 7 May 2012 12:38:20 +0000 (12:38 +0000)]
merging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit