edit-jenkins [Wed, 27 Jun 2012 12:18:28 +0000 (12:18 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.11
Andreas Müller [Tue, 26 Jun 2012 17:51:35 +0000 (17:51 +0000)]
logging for missing extension/marker type
Andreas Müller [Tue, 26 Jun 2012 17:19:03 +0000 (17:19 +0000)]
taxon relation validation for concept relationships
Andreas Müller [Tue, 26 Jun 2012 17:12:02 +0000 (17:12 +0000)]
bugfix for nomStatusRefs
Cherian Mathew [Tue, 26 Jun 2012 16:35:36 +0000 (16:35 +0000)]
add isNoQuotes flag to allow for possibility of ignoring the 'fieldsEnclosedBy' char in the opcsv reader.
Andreas Müller [Tue, 26 Jun 2012 15:26:07 +0000 (15:26 +0000)]
exception handling for missing occurrence tables in BM import
Andreas Müller [Tue, 26 Jun 2012 14:58:50 +0000 (14:58 +0000)]
minor
Andreas Kohlbecker [Tue, 26 Jun 2012 14:55:27 +0000 (14:55 +0000)]
code cosmetics
Andreas Kohlbecker [Tue, 26 Jun 2012 14:43:55 +0000 (14:43 +0000)]
more tests and features for #476: Implement free-text search methods for TaxonBase and TextData
Andreas Müller [Tue, 26 Jun 2012 14:21:54 +0000 (14:21 +0000)]
update mailing lists in cdmlib site doc (#2928)
Andreas Müller [Mon, 25 Jun 2012 11:29:10 +0000 (11:29 +0000)]
implement toString for CdmDatasource
Katja Luther [Mon, 25 Jun 2012 08:37:56 +0000 (08:37 +0000)]
changes concerning creation of inferred synonyms
Cherian Mathew [Fri, 22 Jun 2012 13:39:37 +0000 (13:39 +0000)]
made 'relatedFrom' and 'relatedTo' getter/setter methods public
Cherian Mathew [Fri, 22 Jun 2012 13:38:38 +0000 (13:38 +0000)]
added declaration and definition of 'findNamesByNameCache' method, which is essentially a copy of the 'findNamesByTitleCache' except that it does a search on nameCache.
Cherian Mathew [Fri, 22 Jun 2012 13:37:05 +0000 (13:37 +0000)]
- corrected DwcTaxonCsv2CdmTaxonConverter to do perform regular expression check
- added misapplied name check in DwcTaxonCsv2CdmTaxonRelationConverter to add taxon relationship
Cherian Mathew [Fri, 22 Jun 2012 13:34:13 +0000 (13:34 +0000)]
updated controller and related dtos to,
- add name cache search feature
- correct relationship type representation
Andreas Müller [Fri, 22 Jun 2012 13:05:37 +0000 (13:05 +0000)]
minor
Andreas Kohlbecker [Fri, 22 Jun 2012 09:05:29 +0000 (09:05 +0000)]
adding method to find taxa by a list of given uuids
Andreas Müller [Wed, 20 Jun 2012 18:07:58 +0000 (18:07 +0000)]
provisional bugfixing to allow JAXB import to run in Editor environment
Andreas Müller [Wed, 20 Jun 2012 17:35:47 +0000 (17:35 +0000)]
allow omit term loading for certain imports
Andreas Kohlbecker [Wed, 20 Jun 2012 12:41:29 +0000 (12:41 +0000)]
fixing problem with TaxonServiceImplTest which ocurred only on my machine. The test chain with lead to the error was:
mvn -Dtest=TaxonNodeServiceImplTest,TaxonServiceImplBusinessTest,TaxonServiceSearchTest,TaxonServiceImplTest test
Andreas Kohlbecker [Wed, 20 Jun 2012 09:49:27 +0000 (09:49 +0000)]
[part2/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData
Andreas Kohlbecker [Wed, 20 Jun 2012 09:48:11 +0000 (09:48 +0000)]
[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData
Andreas Kohlbecker [Wed, 20 Jun 2012 09:47:56 +0000 (09:47 +0000)]
[part1/2] more tests for #476: Implement free-text search methods for TaxonBase and TextData
Andreas Kohlbecker [Wed, 20 Jun 2012 06:24:32 +0000 (06:24 +0000)]
removing @Override from interface implementation
Andreas Müller [Tue, 19 Jun 2012 18:50:47 +0000 (18:50 +0000)]
improve term title cache generation -> test
Andreas Müller [Tue, 19 Jun 2012 18:03:28 +0000 (18:03 +0000)]
improve term title cache generation
Andreas Kohlbecker [Tue, 19 Jun 2012 15:58:06 +0000 (15:58 +0000)]
fixing typo in language SPANISH_CASTILIAN & more tests for # 476: Implement free-text search methods for TaxonBase and TextData & indexing uuids
Andreas Kohlbecker [Tue, 19 Jun 2012 15:56:44 +0000 (15:56 +0000)]
fixing typo in language SPANISH_CASTILIAN
Andreas Kohlbecker [Tue, 19 Jun 2012 15:32:36 +0000 (15:32 +0000)]
fixing test with had error due to error prone and misleading instance method
Andreas Kohlbecker [Tue, 19 Jun 2012 14:24:42 +0000 (14:24 +0000)]
fixed # 476: Implement free-text search methods for TaxonBase and TextData
http://dev.e-taxonomy.eu/trac/ticket/476
Andreas Kohlbecker [Tue, 19 Jun 2012 13:52:24 +0000 (13:52 +0000)]
removing error prone and misleading instance method
Andreas Müller [Fri, 15 Jun 2012 14:43:09 +0000 (14:43 +0000)]
minor
Andreas Müller [Fri, 15 Jun 2012 14:06:50 +0000 (14:06 +0000)]
enable omit termloading again
Andreas Müller [Fri, 15 Jun 2012 14:06:19 +0000 (14:06 +0000)]
refactor update title cache
Andreas Müller [Fri, 15 Jun 2012 12:02:46 +0000 (12:02 +0000)]
change logging level for JAXB import
Katja Luther [Fri, 15 Jun 2012 11:03:28 +0000 (11:03 +0000)]
security stuff
Cherian Mathew [Fri, 15 Jun 2012 10:18:29 +0000 (10:18 +0000)]
comments for method getParentLogger
Cherian Mathew [Fri, 15 Jun 2012 10:18:09 +0000 (10:18 +0000)]
comment for methods get/setObject
Cherian Mathew [Fri, 15 Jun 2012 10:17:14 +0000 (10:17 +0000)]
removed @Override since it is incompatible with Java 6
Cherian Mathew [Fri, 15 Jun 2012 10:13:29 +0000 (10:13 +0000)]
removed @Override since it is incompatible with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:46:22 +0000 (09:46 +0000)]
add 1 method to be compliant with Java 7
Cherian Mathew [Fri, 15 Jun 2012 09:41:46 +0000 (09:41 +0000)]
Corrected mistake in END wildcard option
Katja Luther [Fri, 15 Jun 2012 09:40:00 +0000 (09:40 +0000)]
bugfixes in security interceptor
Katja Luther [Fri, 15 Jun 2012 09:39:09 +0000 (09:39 +0000)]
add the cascading from TaxonDescription to its taxon again
Katja Luther [Fri, 15 Jun 2012 09:37:46 +0000 (09:37 +0000)]
Cherian Mathew [Fri, 15 Jun 2012 09:30:05 +0000 (09:30 +0000)]
add 2 methods to ResultSetProxy to be compliant with Java 7
Andreas Kohlbecker [Thu, 14 Jun 2012 11:44:45 +0000 (11:44 +0000)]
adding debug logging
Andreas Müller [Thu, 14 Jun 2012 11:15:40 +0000 (11:15 +0000)]
make update title cache writable
Andreas Müller [Thu, 14 Jun 2012 11:12:54 +0000 (11:12 +0000)]
make update title cache writable
Andreas Müller [Thu, 14 Jun 2012 10:10:24 +0000 (10:10 +0000)]
minor doc
Andreas Müller [Thu, 14 Jun 2012 09:46:19 +0000 (09:46 +0000)]
minor
Andreas Müller [Wed, 13 Jun 2012 15:04:21 +0000 (15:04 +0000)]
useSourceRefAsSec for Dwc-A in
Andreas Müller [Wed, 13 Jun 2012 15:03:32 +0000 (15:03 +0000)]
refactor markup import, separate classes
Katja Luther [Wed, 13 Jun 2012 14:23:43 +0000 (14:23 +0000)]
rechanged the pom
Katja Luther [Wed, 13 Jun 2012 13:51:49 +0000 (13:51 +0000)]
Andreas Müller [Tue, 12 Jun 2012 15:06:19 +0000 (15:06 +0000)]
fix for NPE in TaxonNodeByNameComparator, #2912
Andreas Müller [Mon, 11 Jun 2012 09:54:30 +0000 (09:54 +0000)]
make source reference title configurable
Andreas Müller [Mon, 11 Jun 2012 08:53:04 +0000 (08:53 +0000)]
fixing NPE in Dwc-A import
Andreas Müller [Mon, 11 Jun 2012 08:44:03 +0000 (08:44 +0000)]
minor debugging
Andreas Kohlbecker [Mon, 11 Jun 2012 07:51:33 +0000 (07:51 +0000)]
changing server ip to server name in pom
Andreas Müller [Fri, 8 Jun 2012 11:31:28 +0000 (11:31 +0000)]
minor
Andreas Müller [Thu, 7 Jun 2012 17:11:46 +0000 (17:11 +0000)]
bugfix for wrong http anchor replacement
Andreas Kohlbecker [Thu, 7 Jun 2012 14:11:39 +0000 (14:11 +0000)]
fixing minor bug
Andreas Kohlbecker [Thu, 7 Jun 2012 13:54:09 +0000 (13:54 +0000)]
fixing test data
Andreas Müller [Thu, 7 Jun 2012 10:14:01 +0000 (10:14 +0000)]
remove commented code
Andreas Müller [Thu, 7 Jun 2012 10:08:54 +0000 (10:08 +0000)]
minor
Andreas Kohlbecker [Thu, 7 Jun 2012 09:59:34 +0000 (09:59 +0000)]
findByDescriptionElementFullText implemented an hibernate search related tests fixed
Andreas Müller [Thu, 7 Jun 2012 09:30:50 +0000 (09:30 +0000)]
ObjectChange mapper depending on input class
Andreas Müller [Thu, 7 Jun 2012 09:29:43 +0000 (09:29 +0000)]
add additional features for EM to BM import
Andreas Müller [Thu, 7 Jun 2012 09:20:10 +0000 (09:20 +0000)]
bugfix for features with missing uuid in BM import
Andreas Müller [Wed, 6 Jun 2012 13:24:55 +0000 (13:24 +0000)]
fixed uuid for E+M maps feature
Katja Luther [Wed, 6 Jun 2012 11:30:37 +0000 (11:30 +0000)]
SecurityInterceptor added
Andreas Müller [Wed, 6 Jun 2012 11:20:52 +0000 (11:20 +0000)]
handle links to maps as facts in BM correctly during export to CDM
Katja Luther [Wed, 6 Jun 2012 11:16:42 +0000 (11:16 +0000)]
Adding PermissionEvaluator and helper classes
Andreas Müller [Mon, 4 Jun 2012 13:36:51 +0000 (13:36 +0000)]
bugfix for missing facts in BM import and refactoring in BM facts import
Andreas Müller [Fri, 1 Jun 2012 16:00:36 +0000 (16:00 +0000)]
implement sublusus and some remaining issues from taxon status change for PESI export
Andreas Müller [Fri, 1 Jun 2012 12:32:33 +0000 (12:32 +0000)]
bugfix for problems with emCommonName import unmatched areas
Andreas Müller [Fri, 1 Jun 2012 11:43:23 +0000 (11:43 +0000)]
implement alternative rank labels for BM, #2811
Andreas Müller [Fri, 1 Jun 2012 11:24:05 +0000 (11:24 +0000)]
make some uuids public
Andreas Müller [Wed, 30 May 2012 13:24:25 +0000 (13:24 +0000)]
fix tests for PolytomousKeyNodes, #2892
Andreas Müller [Wed, 30 May 2012 12:16:33 +0000 (12:16 +0000)]
bugfix for PolytomousKeyNode numbering, #2892
Andreas Müller [Wed, 30 May 2012 11:46:47 +0000 (11:46 +0000)]
update Markup import for F. Guianas
Andreas Müller [Fri, 25 May 2012 16:47:24 +0000 (16:47 +0000)]
minor
Katja Luther [Thu, 24 May 2012 11:18:40 +0000 (11:18 +0000)]
the exception because of the missing profiling agent is not propagated, only a logger message will be written
Andreas Müller [Thu, 24 May 2012 11:13:51 +0000 (11:13 +0000)]
bugfix for autonym authorship #2888
Andreas Müller [Thu, 24 May 2012 11:10:15 +0000 (11:10 +0000)]
bugfix for autonym authorship #2888
Andreas Müller [Wed, 23 May 2012 16:43:28 +0000 (16:43 +0000)]
Correct handling for multiple author teams (replace & by , )
l.morris [Wed, 23 May 2012 15:35:38 +0000 (15:35 +0000)]
Added property to associate the vibrant-name.xsl and vibrant-taxon.xsl to the name/taxon service so that the appropriate XSLT is applied to XML in the web browser.
Andreas Müller [Tue, 22 May 2012 15:52:52 +0000 (15:52 +0000)]
fix misspelling for warning
Andreas Müller [Tue, 22 May 2012 15:28:54 +0000 (15:28 +0000)]
latest updates to markup import for FdG
l.morris [Tue, 22 May 2012 13:26:30 +0000 (13:26 +0000)]
Added citation for homotypic synonyms. Modified citation to include only author surnames, rather than synonyms in the PDF print output.
Andreas Müller [Tue, 22 May 2012 11:54:24 +0000 (11:54 +0000)]
bugfix for protected name title caches in BM import
Andreas Müller [Tue, 22 May 2012 10:56:36 +0000 (10:56 +0000)]
minor
Andreas Müller [Mon, 21 May 2012 16:45:22 +0000 (16:45 +0000)]
remove deprecated method
Andreas Müller [Mon, 21 May 2012 14:40:06 +0000 (14:40 +0000)]
debugging for precision
edit-jenkins [Tue, 8 May 2012 10:02:32 +0000 (10:02 +0000)]
[maven-release-plugin] prepare for next development iteration
edit-jenkins [Tue, 8 May 2012 10:02:30 +0000 (10:02 +0000)]
[maven-release-plugin] prepare release cdmlib-parent-3.0.10
Andreas Kohlbecker [Mon, 7 May 2012 15:48:53 +0000 (15:48 +0000)]
fixing #2879 (Error when using the remote webservice function find NamebyNames)
Andreas Kohlbecker [Mon, 7 May 2012 12:38:20 +0000 (12:38 +0000)]
merging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit