/**
* This class represents terms describing the {@link AbsenceTerm absence}
* (like "extinct") or the {@link PresenceTerm presence} (like "cultivated") of a
- * {@link Taxon taxon} in a {@link NamedArea named area}. These terms are only
+ * {@link Taxon taxon} in an {@link NamedArea area}. These terms are only
* used for {@link Distribution distributions}.
-
+ *
+ * The current implementation includes multiple qualities of distribution status:<BR><BR>
+ *
+ * 1. Degree of "presence": present, presence questionable, reported in error, absent, ...<BR>
+ * 2. Nativeness/naturalization/...: native, alien (introduced), naturalized, cultivated, invasive, ... <BR>
+ * <BR>
+ * There might be further qualities like adventive(unwanted)<->introduced(wanted - for cultivation)
+ * <BR>
+ * For an interesting discussion of these status see Pyšek & al.: Alien plants in checklists and floras;
+ * Taxon 53(1), Feb. 2004: 131-143 <BR>
+ *
+ * Pyšek et al. distinguises<BR>
+ * native - alien<BR>
+ * alien => cultivated-outside cultivation<BR>
+ * outside cultivation=>casual - naturalized<BR>
+ * naturalized => non invasive - invasive<BR>
+ * invasive => not harmful - transformers - weeds
+ *
+ * @see http://dev.e-taxonomy.eu/redmine/issues/6000
*
* @author m.doering
* @created 08-Nov-2007 13:06:44
//presence
private static final UUID uuidN=UUID.fromString("ddeac4f2-d8fa-43b8-ad7e-ca13abdd32c7");
- private static final UUID uuidNQ=UUID.fromString("925662c1-bb10-459a-8c53-da5a738ac770");
private static final UUID uuidND=UUID.fromString("310373bf-7df4-4d02-8cb3-bcc7448805fc");
private static final UUID uuidC=UUID.fromString("9eb99fe6-59e2-4445-8e6a-478365bd0fa9");
- private static final UUID uuidCQ=UUID.fromString("4f31bfc8-3058-4d83-aea5-3a1fe9773f9f");
private static final UUID uuidI=UUID.fromString("643cf9d1-a5f1-4622-9837-82ef961e880b");
- private static final UUID uuidIQ=UUID.fromString("83eb0aa0-1a45-495a-a3ca-bf6958b74366");
private static final UUID uuidID=UUID.fromString("0c54761e-4887-4788-9dfa-7190c88746e3");
private static final UUID uuidIP=UUID.fromString("da159544-b0dd-4599-a9c9-640826af8c17");
private static final UUID uuidIA=UUID.fromString("42946bd6-9c22-45ad-a910-7427e8f60bfd");
private static final UUID uuidIN=UUID.fromString("e191e89a-a751-4b0c-b883-7f1de70915c9");
private static final UUID uuidIC=UUID.fromString("fac8c347-8262-44a1-b0a4-db4de451c021");
private static final UUID uuidE=UUID.fromString("c3ee7048-15b7-4be1-b687-9ce9c1a669d6");
- private static final UUID uuidNA=UUID.fromString("4e04990a-66fe-4fdf-856c-f40772fbcf0a");
+ //was merged int uuidIN
+ // private static final UUID uuidNa=UUID.fromString("4e04990a-66fe-4fdf-856c-f40772fbcf0a");
private static final UUID uuidIV=UUID.fromString("dc536e3d-a753-4bbe-a386-dd8aff35c234");
+ //doubtfully present
+ private static final UUID uuidNQ=UUID.fromString("925662c1-bb10-459a-8c53-da5a738ac770");
+ private static final UUID uuidCQ=UUID.fromString("4f31bfc8-3058-4d83-aea5-3a1fe9773f9f");
+ private static final UUID uuidIQ=UUID.fromString("83eb0aa0-1a45-495a-a3ca-bf6958b74366");
+ private static final UUID uuidEQ=UUID.fromString("5f954f08-267a-4928-b073-12328f74c187");
+// private static final UUID uuidNDQ=UUID.fromString("7ddfd94d-01a4-496c-a6d6-18584c00af59");
+
//absence
private static final UUID uuidAbsence=UUID.fromString("59709861-f7d9-41f9-bb21-92559cedd598");
private static final UUID uuidReportedInError = UUID.fromString("38604788-cf05-4607-b155-86db456f7680");
private static final UUID uuidIF=UUID.fromString("aeec2947-2700-4623-8e32-9e3a430569d1");
private static final UUID uuidCF=UUID.fromString("9d4d3431-177a-4abe-8e4b-1558573169d6");
private static final UUID uuidNE=UUID.fromString("5c397f7b-59ef-4c11-a33c-45691ceda91b");
+ private static final UUID uuidNDE=UUID.fromString("71b72e24-c2b6-44a5-bdab-39f083bf0f06");
private static final UUID uuidIE=UUID.fromString("b74dc30b-ee93-496d-8c00-4d00abae1ec7");
+ private static final UUID uuidEE=UUID.fromString("679b215d-c231-4ee2-ae12-3ffc3dd528ad");
+ private static final UUID uuidNaE=UUID.fromString("8d918a37-3add-4e1c-a233-c37dbee209aa");
protected static Map<UUID, PresenceAbsenceTerm> termMap = null;
} else if (abbrev.equalsIgnoreCase("ia")) { return PresenceAbsenceTerm.INTRODUCED_ADVENTITIOUS();
} else if (abbrev.equalsIgnoreCase("ic")) { return PresenceAbsenceTerm.INTRODUCED_CULTIVATED();
} else if (abbrev.equalsIgnoreCase("id")) { return PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED();
- } else if (abbrev.equalsIgnoreCase("in")) { return PresenceAbsenceTerm.INTRODUCED_NATURALIZED();
+ } else if (abbrev.equalsIgnoreCase("in")) { return PresenceAbsenceTerm.NATURALISED();
} else if (abbrev.equalsIgnoreCase("ip")) { return PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION();
} else if (abbrev.equalsIgnoreCase("iq")) { return PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE();
} else if (abbrev.equalsIgnoreCase("n")) { return PresenceAbsenceTerm.NATIVE();
}
}
+ /**
+ * The taxon is endemic for the given area.
+ * @see #PRESENT()
+ * @see #NATIVE()
+ * @see #ENDEMIC_DOUBTFULLY_PRESENT()
+ * @see #ENDEMIC_REPORTED_IN_ERROR()
+ */
+ public static final PresenceAbsenceTerm ENDEMIC_FOR_THE_RELEVANT_AREA(){
+ return getTermByUuid(uuidE);
+ }
+ /**
+ * The taxon is endemic for the given area but doubtfully present.
+ * @see #ENDEMIC_FOR_THE_RELEVANT_AREA()
+ * @see #ENDEMIC_REPORTED_IN_ERROR()
+ * @see #PRESENT_DOUBTFULLY()
+ * @see #NATIVE_PRESENCE_QUESTIONABLE()
+ */
+ public static final PresenceAbsenceTerm ENDEMIC_DOUBTFULLY_PRESENT(){
+ return getTermByUuid(uuidEQ);
+ }
+
+ /**
+ * The taxon if it exists is endemic for the given area but was only
+ * erroneously reported.
+ * So it either does not exist or it is unclear where it was originally found.
+ * @see #ENDEMIC_FOR_THE_RELEVANT_AREA()
+ * @see #ENDEMIC_DOUBTFULLY_PRESENT()
+ * @see #REPORTED_IN_ERROR()
+ * @see #NATIVE_REPORTED_IN_ERROR()
+ */
+ public static final PresenceAbsenceTerm ENDEMIC_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidEE);
+ }
+
+
+ /**
+ * The taxon is present in the given area. No information given about
+ * nativeness/establishment means.
+ *
+ * @see #PRESENT_DOUBTFULLY()
+ * @see #ABSENT()
+ */
public static final PresenceAbsenceTerm PRESENT(){
return getTermByUuid(uuidP);
}
+
+ /**
+ * Presence of the taxon in the given area is doubtful. No information given about
+ * nativeness/establishment means.
+ *
+ * @see #PRESENT()
+ * @see #ABSENT()
+ */
public static final PresenceAbsenceTerm PRESENT_DOUBTFULLY(){
return getTermByUuid(uuidPD);
}
+
+ /**
+ * The taxon is not native but cultivated.
+ *
+ * @see #CULTIVATED_PRESENCE_QUESTIONABLE()
+ * @see #CULTIVATED_REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm CULTIVATED(){
return getTermByUuid(uuidC);
}
+
+ /**
+ * The taxon is cultivated but presence is questionable.
+ *
+ * @see #CULTIVATED()
+ * @see #CULTIVATED_REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm CULTIVATED_PRESENCE_QUESTIONABLE(){
return getTermByUuid(uuidCQ);
}
- public static final PresenceAbsenceTerm ENDEMIC_FOR_THE_RELEVANT_AREA(){
- return getTermByUuid(uuidE);
- }
- public static final PresenceAbsenceTerm INTRODUCED(){
+
+ /**
+ * The taxon is erroneously reported as cultivated.
+ *
+ * @see #CULTIVATED()
+ * @see #CULTIVATED_REPORTED_IN_ERROR()
+ */
+ public static final PresenceAbsenceTerm CULTIVATED_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidCF);
+ }
+
+
+ public static final PresenceAbsenceTerm INTRODUCED(){
return getTermByUuid(uuidI);
}
- public static final PresenceAbsenceTerm INTRODUCED_ADVENTITIOUS(){
+
+ /**
+ * This term is of questional value. Introduced often is handled as opposite
+ * of adventitious/adventive and describes how the alien species came
+ * - on purpose for cultivation (introduced) or not (adventive).
+ * Adventitious or better adventive is often a synonym for casual which might
+ * be the better term here.
+ */
+ @Deprecated
+ public static final PresenceAbsenceTerm INTRODUCED_ADVENTITIOUS(){
return getTermByUuid(uuidIA);
}
return getTermByUuid(uuidID);
}
- public static final PresenceAbsenceTerm INTRODUCED_NATURALIZED(){
+ /**
+ *
+ * @see #NATURALISED()
+ */
+ public static final PresenceAbsenceTerm NATURALISED(){
return getTermByUuid(uuidIN);
}
+ public static final PresenceAbsenceTerm INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION(){
+ return getTermByUuid(uuidIP);
+ }
+
public static final PresenceAbsenceTerm INTRODUCED_PRESENCE_QUESTIONABLE(){
return getTermByUuid(uuidIQ);
}
- public static final PresenceAbsenceTerm INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION(){
- return getTermByUuid(uuidIP);
- }
+ public static final PresenceAbsenceTerm INTRODUCED_FORMERLY_INTRODUCED(){
+ return getTermByUuid(uuidIE);
+ }
+
+ public static final PresenceAbsenceTerm INTRODUCED_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidIF);
+ }
+ /**
+ * Use native if the taxon is native in the according area. Native and indigenous
+ * have the same meaning. Native might be problematic because the abbreviation
+ * N is already used for naturalised.
+ *
+ * @see #NATIVE_DOUBTFULLY_NATIVE()
+ * @see #NATIVE_PRESENCE_QUESTIONABLE()
+ * @see #NATIVE_REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm NATIVE(){
return getTermByUuid(uuidN);
}
+ /**
+ * Same as {@link #NATIVE()} but presence is questionable
+ * @see #NATIVE()
+ * @see #NATIVE_DOUBTFULLY_NATIVE()
+ * @see #NATIVE_REPORTED_IN_ERROR()
+ */
+ public static final PresenceAbsenceTerm NATIVE_PRESENCE_QUESTIONABLE(){
+ return getTermByUuid(uuidNQ);
+ }
+
+ /**
+ * The taxon was formerly native, but is extinct now in the given area.
+ *
+ * @see #NATIVE()
+ * @see #ABSENT()
+ */
+ public static final PresenceAbsenceTerm NATIVE_FORMERLY_NATIVE(){
+ return getTermByUuid(uuidNE);
+ }
+
+ /**
+ * Same as {@link #NATIVE()} but presence was reported in error, so
+ * finally it is not native.
+ * @see #NATIVE()
+ * @see #NATIVE_PRESENCE_QUESTIONABLE()
+ * @see #NATIVE_DOUBTFULLY_NATIVE()
+ */
+ public static final PresenceAbsenceTerm NATIVE_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidNF);
+ }
+
+ /**
+ * Same as {@link #NATIVE()} but the nativeness is doubtful, while presence
+ * is NOT questionable
+ * @see #NATIVE()
+ * @see #NATIVE_PRESENCE_QUESTIONABLE()
+ * @see #NATIVE_REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm NATIVE_DOUBTFULLY_NATIVE(){
return getTermByUuid(uuidND);
}
- public static final PresenceAbsenceTerm NATIVE_PRESENCE_QUESTIONABLE(){
- return getTermByUuid(uuidNQ);
- }
+ /**
+ * Same as {@link #NATIVE()} but the nativeness is doubtful, while presence
+ * is NOT questionable
+ * @see #NATIVE_DOUBTFULLY_NATIVE()
+ * @see #NATIVE()
+ * @see #NATIVE_PRESENCE_QUESTIONABLE()
+ */
+ public static final PresenceAbsenceTerm NATIVE_DOUBTFULLY_NATIVE_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidNDE);
+ }
+ public static final PresenceAbsenceTerm NATURALISED_REPORTED_IN_ERROR(){
+ return getTermByUuid(uuidNaE);
+ }
+
+ /**
+ * The taxon is present but not native in the given area.
+ * Additionally it is dangerous for the native species.
+ *
+ * TBC
+ */
public static final PresenceAbsenceTerm INVASIVE(){
return getTermByUuid(uuidIV);
}
- public static final PresenceAbsenceTerm NATURALISED(){
- return getTermByUuid(uuidNA);
- }
-
+ /**
+ * @see #PRESENT()
+ * @see #REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm ABSENT(){
return getTermByUuid(uuidAbsence);
}
+ /**
+ * The taxon is {@link #ABSENT() absent} in the given area
+ * but was erroneously reported as present.
+ *
+ * @see #ABSENT()
+ * @see #NATIVE_REPORTED_IN_ERROR()
+ * @see #INTRODUCED_REPORTED_IN_ERROR()
+ */
public static final PresenceAbsenceTerm REPORTED_IN_ERROR(){
return getTermByUuid(uuidReportedInError);
}
- public static final PresenceAbsenceTerm NATIVE_REPORTED_IN_ERROR(){
- return getTermByUuid(uuidNF);
- }
-
- public static final PresenceAbsenceTerm CULTIVATED_REPORTED_IN_ERROR(){
- return getTermByUuid(uuidCF);
- }
-
- public static final PresenceAbsenceTerm INTRODUCED_REPORTED_IN_ERROR(){
- return getTermByUuid(uuidIF);
- }
-
- public static final PresenceAbsenceTerm NATIVE_FORMERLY_NATIVE(){
- return getTermByUuid(uuidNE);
- }
-
- public static final PresenceAbsenceTerm INTRODUCED_FORMERLY_INTRODUCED(){
- return getTermByUuid(uuidIE);
- }
-
//******************************** METHODS ****************************/
"adbbbe15-c4d3-47b7-80a8-c7d104e53a05",,"Presence Absence Term","Presence Absence Term","PAT","1"
"c3ee7048-15b7-4be1-b687-9ce9c1a669d6",,"endemic","endemic for the relevant area","e","●","77ed6f","0"
"cef81d25-501c-48d8-bbea-542ec50de2c2",,"present","present","p","","8dd3c7","0"
-"75a60279-a4c2-4f53-bc57-466028a4b3db",,"doubtfully present","present: doubtfully present","pd","?","8dd320","0"
"ddeac4f2-d8fa-43b8-ad7e-ca13abdd32c7",,"native","native","n","","ffffb3","0"
"310373bf-7df4-4d02-8cb3-bcc7448805fc",,"native: doubtfully native","native: doubtfully native","nd","d","80b1d3","0"
-"e191e89a-a751-4b0c-b883-7f1de70915c9",,"introduced: naturalized","introduced: naturalized","in","n","ff0d6f","0"
-"42946bd6-9c22-45ad-a910-7427e8f60bfd",,"introduced: adventitious (casual)","introduced: adventitious (casual)","ia","a","ffed61","0"
+"e191e89a-a751-4b0c-b883-7f1de70915c9",,"naturalised","introduced: naturalised","in","n","ff0d6f","0"
+"42946bd6-9c22-45ad-a910-7427e8f60bfd",,"casual","introduced: adventive (casual)","ia","a","ffed61","0"
"643cf9d1-a5f1-4622-9837-82ef961e880b",,"introduced","introduced","i","i","d9d9d9","0"
+"da159544-b0dd-4599-a9c9-640826af8c17",,"introduced: uncertain degree of naturalisation","introduced: uncertain degree of naturalisation","ip","ip","afed6f","0"
"0c54761e-4887-4788-9dfa-7190c88746e3",,"introduced: doubtfully introduced (perhaps cultivated only)","introduced: doubtfully introduced (perhaps cultivated only)","id","id","ffed6f","0"
-"4e04990a-66fe-4fdf-856c-f40772fbcf0a",,"naturalised","naturalised","na","n","f7acfe","0"
"dc536e3d-a753-4bbe-a386-dd8aff35c234",,"invasive","invasive","iv","iv","557700","0"
-"925662c1-bb10-459a-8c53-da5a738ac770",,"native: presence questionable","native: presence questionable","nq","?","bebada","0"
-"83eb0aa0-1a45-495a-a3ca-bf6958b74366",,"introduced: presence questionable","introduced: presence questionable","iq","?","bc80bd","0"
"fac8c347-8262-44a1-b0a4-db4de451c021",,"introduced: cultivated","introduced: cultivated","ic","c","555555","0"
"9eb99fe6-59e2-4445-8e6a-478365bd0fa9",,"cultivated","cultivated","c","c","b3de69","0"
+"5f954f08-267a-4928-b073-12328f74c187",,"endemic: presence questionable","endemic: presence questionable","?e","?●","fef1ff","0"
+"75a60279-a4c2-4f53-bc57-466028a4b3db",,"doubtfully present","present: presence questionable","pd","?","8dd320","0"
+"925662c1-bb10-459a-8c53-da5a738ac770",,"native: presence questionable","native: presence questionable","nq","?","bebada","0"
+"83eb0aa0-1a45-495a-a3ca-bf6958b74366",,"introduced: presence questionable","introduced: presence questionable","iq","?","bc80bd","0"
"4f31bfc8-3058-4d83-aea5-3a1fe9773f9f",,"cultivated, presence questionable","cultivated, presence questionable","cq","?c","93de69","0"
"59709861-f7d9-41f9-bb21-92559cedd598",,"absent","absent","a","–","ffffff","1"
"5c397f7b-59ef-4c11-a33c-45691ceda91b",,"native: formerly native","native: formerly native","ne","ne","ccb462","1"
+"679b215d-c231-4ee2-ae12-3ffc3dd528ad",,"endemic: reported in error","endemic: reported in error","-e","–●","fef1ff","1"
"38604788-cf05-4607-b155-86db456f7680",,"reported in error","reported in error","f","–","cccccc","1"
"61cee840-801e-41d8-bead-015ad866c2f1",,"native: reported in error","native: reported in error","nf","–","fdb462","1"
+"71b72e24-c2b6-44a5-bdab-39f083bf0f06",,"doubtfully native: reported in error","doubtfully native: reported in error","-d","-d","fef1ff","1"
"aeec2947-2700-4623-8e32-9e3a430569d1",,"introduced: reported in error","introduced: reported in error","if","–","ffed3f","1"
"b74dc30b-ee93-496d-8c00-4d00abae1ec7",,"introduced: formerly introduced","introduced: formerly introduced","ie","ie","ccebcc","1"
-"da159544-b0dd-4599-a9c9-640826af8c17",,"introduced: uncertain degree of naturalisation","introduced: uncertain degree of naturalisation","ip","ip","afed6f","0"
+"8d918a37-3add-4e1c-a233-c37dbee209aa",,"naturalised: reported in error","naturalised: reported in error","-n","-n","fef1ff","1"
"9d4d3431-177a-4abe-8e4b-1558573169d6",,"cultivated: reported in error","cultivated: reported in error","cf","–","fccde5","1"
\ No newline at end of file
BGBM BDI Projects / cdmlib.git / commitdiff