app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaExportActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9
  10 package eu.etaxonomy.cdm.app.dwca;
  11
  12 import java.io.File;
  13 import java.net.URI;
  14 import java.util.Arrays;
  15 import java.util.List;
  16 import java.util.UUID;
  17
  18 import org.apache.log4j.Logger;
  19 import org.joda.time.DateTime;
  20
  21 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  22 import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
  23 import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
  24 import eu.etaxonomy.cdm.database.ICdmDataSource;
  25 import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
  26 import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;
  27 import eu.etaxonomy.cdm.io.dwca.out.DwcaEmlRecord;
  28 import eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportConfigurator;
  29 import eu.etaxonomy.cdm.model.agent.Institution;
  30 import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
  31 import eu.etaxonomy.cdm.model.agent.Person;
  32
  33
  34 /**
  35  *
  36  * @author a.mueller
  37  *
  38  */
  39 public class DwcaExportActivator {
  40         @SuppressWarnings("unused")
  41         private static final Logger logger = Logger.getLogger(DwcaExportActivator.class);
  42
  43         //database validation status (create, update, validate ...)
  44         private static final String fileDestination = "C:\\tmp\\dwcaTmp\\cyprus\\";
  45 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_local_cichorieae();
  46 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_test_local_mysql();
  47 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_cichorieae();
  48 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_flora_central_africa_production();
  49         private static final ICdmDataSource cdmSource = CdmDestinations.cdm_cyprus_production();
  50
  51         private IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
  52
  53         private static DateTime dateTime = new DateTime();
  54         private static String date = dateTime.getYear() + "-" + dateTime.getMonthOfYear() + "-" + dateTime.getDayOfMonth();
  55
  56         private static final String defaultBibliographicCitation = "ICN (Hand, R., Kilian, N. & Raab-Straube, E. von; general editors) 2009+ (continuously updated): International Cichorieae Network: Cichorieae Portal. Published on the Internet at http://wp6-cichorieae.e-taxonomy.eu/portal/; " +
  57                 "accessed ["+date+"].";
  58
  59         private static final String taxonSourceDefault = "http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{id}";
  60
  61         //check - import
  62         private static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;
  63
  64         private static List<UUID> featureExclusions = Arrays.asList(new UUID[]{
  65                         UUID.fromString("5deff505-1a32-4817-9a74-50e6936fd630"),   //occurrences
  66                         UUID.fromString("8075074c-ace8-496b-ac82-47c14553f7fd"),    //Editor_Parenthesis
  67                         UUID.fromString("c0cc5ebe-1f0c-4c31-af53-d486858ea415"),   //Image Sources
  68                         UUID.fromString("9f6c551d-0f19-45ea-a855-4946f6fc1093"),                //Credits
  69                         UUID.fromString("cbf12c6c-94e6-4724-9c48-0f6f10d83e1c"),   //Editor Brackets
  70                         UUID.fromString("0508114d-4158-48b5-9100-369fa75120d3")     //inedited
  71         });
  72
  73
  74 // ****************** ALL *****************************************
  75
  76 //      private boolean doTaxa = true;
  77 //      private boolean doResourceRelation = true;
  78 //      private boolean doTypesAndSpecimen = true;
  79 //      private boolean doVernacularNames = true;
  80 //      private boolean doReferences = true;
  81 //      private boolean doDescription = true;
  82 //      private boolean doDistributions = true;
  83 //      private boolean doImages = false;
  84 //      private boolean doMetaData = true;
  85 //      private boolean doEml = true;
  86
  87 // ************************ NONE **************************************** //
  88
  89         private boolean doTaxa = true;
  90         private boolean doResourceRelation = false;
  91         private boolean doTypesAndSpecimen = false;
  92         private boolean doVernacularNames = false;
  93         private boolean doReferences = false;
  94         private boolean doDescription = false;
  95         private boolean doDistributions = false;
  96         private boolean doImages = false;
  97         private boolean doMetaData = true;
  98         private boolean doEml = false;
  99
 100         public boolean  doExport(ICdmDataSource source){
 101                 System.out.println("Start export to DWC-A ("+ fileDestination + ") ...");
 102
 103 //              CdmUpdater su = CdmUpdater.NewInstance();
 104 //              IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
 105 //
 106 //              try {
 107 //                      su.updateToCurrentVersion(source, monitor);
 108 //              } catch (Exception e) {
 109 //                      e.printStackTrace();
 110 //              }
 111 //              if (true){
 112 //                      return true;
 113 //              }
 114
 115                 //make file destination
 116                 String destination = fileDestination;
 117                 DwcaEmlRecord emlRecord = getEmlRecord();
 118
 119                 DwcaTaxExportConfigurator config = DwcaTaxExportConfigurator.NewInstance(source, new File(destination), emlRecord);
 120
 121                 config.setDoTaxa(doTaxa);
 122                 config.setDoResourceRelation(doResourceRelation);
 123                 config.setDoTypesAndSpecimen(doTypesAndSpecimen);
 124                 config.setDoVernacularNames(doVernacularNames);
 125                 config.setDoReferences(doReferences);
 126                 config.setDoDescription(doDescription);
 127                 config.setDoDistributions(doDistributions);
 128                 config.setDoImages(doImages);
 129                 config.setDoMetaData(doMetaData);
 130                 config.setDoEml(doEml);
 131                 config.setCheck(check);
 132                 config.setProgressMonitor(monitor);
 133                 config.setDefaultBibliographicCitation(defaultBibliographicCitation);
 134                 config.setDefaultTaxonSource(taxonSourceDefault);
 135                 monitor.beginTask("DwcA-Export", 10);
 136
 137                 config.setFeatureExclusions(featureExclusions);
 138                 // invoke import
 139                 CdmDefaultExport<DwcaTaxExportConfigurator> bmExport = new CdmDefaultExport<DwcaTaxExportConfigurator>();
 140                 boolean result = bmExport.invoke(config);
 141
 142                 System.out.println("End export to DWC-A ("+ fileDestination + ")..." + (result? "(successful)":"(with errors)"));
 143                 return result;
 144         }
 145
 146
 147         private DwcaEmlRecord getEmlRecord() {
 148                 DwcaEmlRecord emlRecord = new DwcaEmlRecord();
 149                 emlRecord.setIdentifier("My Identifier");
 150                 emlRecord.setTitle("Flora of cyprus");
 151                 emlRecord.setPublicationDate(new DateTime());
 152                 emlRecord.setExpectedCitation("Expected Citation");
 153                 emlRecord.setAbstractInfo("The abstract");
 154                 emlRecord.setAdditionalInformation("Add info");
 155                 emlRecord.setResourceLanguage(null);
 156                 emlRecord.setResourceUrl(URI.create("http://www.flora-of-cyprus.eu//portal/"));
 157                 emlRecord.setMetaDataLanguage(null);
 158                 emlRecord.setResourceLogoUri(null);
 159                 emlRecord.setCreativeCommonsLicensing(null);
 160                 emlRecord.setProjectTitle("Projekt tit");
 161                 emlRecord.setProjectLead("Proj Lead");
 162                 emlRecord.setProjectDescription("Proj Desc");
 163
 164                 Person person = Person.NewInstance();
 165                 Institution institution = Institution.NewInstance();
 166
 167                 InstitutionalMembership m = person.addInstitutionalMembership(institution, null, null, null);
 168                 emlRecord.setResourceCreator(m);
 169
 170                 return emlRecord;
 171         }
 172
 173
 174         /**
 175          * @param args
 176          */
 177         public static void main(String[] args) {
 178                 DwcaExportActivator ex = new DwcaExportActivator();
 179                 ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
 180
 181                 ex.doExport(source);
 182         }
 183
 184
 185
 186
 187 }