app-import/src/main/java/eu/etaxonomy/cdm/app/dwca/DwcaExportActivator.java

   1 /**
   2 * Copyright (C) 2007 EDIT
   3 * European Distributed Institute of Taxonomy
   4 * http://www.e-taxonomy.eu
   5 *
   6 * The contents of this file are subject to the Mozilla Public License Version 1.1
   7 * See LICENSE.TXT at the top of this package for the full license terms.
   8 */
   9 package eu.etaxonomy.cdm.app.dwca;
  10
  11 import java.io.File;
  12 import java.util.Arrays;
  13 import java.util.List;
  14 import java.util.UUID;
  15
  16 import org.apache.logging.log4j.LogManager;
  17 import org.apache.logging.log4j.Logger;
  18 import org.joda.time.DateTime;
  19
  20 import eu.etaxonomy.cdm.app.common.CdmDestinations;
  21 import eu.etaxonomy.cdm.common.URI;
  22 import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
  23 import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
  24 import eu.etaxonomy.cdm.database.ICdmDataSource;
  25 import eu.etaxonomy.cdm.filter.TaxonNodeFilter;
  26 import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
  27 import eu.etaxonomy.cdm.io.common.ExportResult;
  28 import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;
  29 import eu.etaxonomy.cdm.io.dwca.out.DwcaEmlRecord;
  30 import eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportConfigurator;
  31 import eu.etaxonomy.cdm.model.agent.Institution;
  32 import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
  33 import eu.etaxonomy.cdm.model.agent.Person;
  34
  35 /**
  36  * Activator for running a general DwC-A export.
  37  *
  38  * Note: there is a specific version for Cichorieae in the Cichorieae folder.
  39  *
  40  * @author a.mueller
  41  */
  42 public class DwcaExportActivator {
  43
  44         @SuppressWarnings("unused")
  45     private static final Logger logger = LogManager.getLogger();
  46
  47         //database validation status (create, update, validate ...)
  48         private static final String fileDestination = "C:\\Users\\muellera\\tmp\\export\\Cichorieae\\dwca-export.zip";
  49 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_local_cichorieae();
  50 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_test_local_mysql();
  51         private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_cichorieae();
  52 //      private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_cyprus();
  53
  54         private IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
  55
  56         private static DateTime dateTime = new DateTime();
  57         private static String date = dateTime.getYear() + "-" + dateTime.getMonthOfYear() + "-" + dateTime.getDayOfMonth();
  58
  59         private static final String defaultBibliographicCitation = "xxx; " +
  60                 "accessed ["+date+"].";
  61
  62         private static final String taxonSourceDefault = "http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{id}";
  63
  64         //Cichorioideae subtree / standard view
  65         private static final UUID subtreeUuid = UUID.fromString("a523a752-aa7c-4efd-b733-64bf3bf580e9");
  66
  67         //check - import
  68         private static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;
  69
  70         private static List<UUID> featureExclusions = Arrays.asList(new UUID[]{
  71                         UUID.fromString("5deff505-1a32-4817-9a74-50e6936fd630"),   //occurrences
  72                         UUID.fromString("8075074c-ace8-496b-ac82-47c14553f7fd"),    //Editor_Parenthesis
  73                         UUID.fromString("c0cc5ebe-1f0c-4c31-af53-d486858ea415"),   //Image Sources
  74                         UUID.fromString("9f6c551d-0f19-45ea-a855-4946f6fc1093"),                //Credits
  75                         UUID.fromString("cbf12c6c-94e6-4724-9c48-0f6f10d83e1c"),   //Editor Brackets
  76                         UUID.fromString("0508114d-4158-48b5-9100-369fa75120d3")     //inedited
  77         });
  78
  79
  80 // ****************** ALL *****************************************
  81
  82 //      private boolean doTaxa = true;
  83 //      private boolean doResourceRelation = true;
  84 //      private boolean doTypesAndSpecimen = true;
  85 //      private boolean doVernacularNames = true;
  86 //      private boolean doReferences = true;
  87 //      private boolean doDescription = true;
  88 //      private boolean doDistributions = true;
  89 //      private boolean doImages = false;
  90 //      private boolean doMetaData = true;
  91 //      private boolean doEml = true;
  92
  93 // ************************ NONE **************************************** //
  94
  95         private boolean doTaxa = true;
  96         private boolean doResourceRelation = true;
  97         private boolean doTypesAndSpecimen = true;
  98         private boolean doVernacularNames = true;
  99         private boolean doReferences = true;
 100         private boolean doDescription = true;
 101         private boolean doDistributions = true;
 102         private boolean doImages = false;
 103         private boolean doMetaData = true;
 104         private boolean doEml = true;
 105
 106         public ExportResult doExport(ICdmDataSource source){
 107                 System.out.println("Start export to DWC-A ("+ fileDestination + ") ...");
 108
 109 //              CdmUpdater su = CdmUpdater.NewInstance();
 110 //              IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
 111 //
 112 //              try {
 113 //                      su.updateToCurrentVersion(source, monitor);
 114 //              } catch (Exception e) {
 115 //                      e.printStackTrace();
 116 //              }
 117 //              if (true){
 118 //                      return true;
 119 //              }
 120
 121                 //make file destination
 122                 String destination = fileDestination;
 123                 DwcaEmlRecord emlRecord = getEmlRecord();
 124
 125                 DwcaTaxExportConfigurator config = DwcaTaxExportConfigurator.NewInstance(source, new File(destination), emlRecord);
 126
 127                 TaxonNodeFilter taxonNodeFilter = TaxonNodeFilter.NewSubtreeInstance(subtreeUuid);
 128                 config.setTaxonNodeFilter(taxonNodeFilter);
 129
 130                 config.setDoTaxa(doTaxa);
 131                 config.setDoResourceRelations(doResourceRelation);
 132                 config.setDoTypesAndSpecimen(doTypesAndSpecimen);
 133                 config.setDoVernacularNames(doVernacularNames);
 134                 config.setDoReferences(doReferences);
 135                 config.setDoDescriptions(doDescription);
 136                 config.setDoDistributions(doDistributions);
 137                 config.setDoImages(doImages);
 138                 config.setDoMetaData(doMetaData);
 139                 config.setDoEml(doEml);
 140                 config.setCheck(check);
 141                 config.setProgressMonitor(monitor);
 142                 config.setDefaultBibliographicCitation(defaultBibliographicCitation);
 143                 config.setDefaultTaxonSource(taxonSourceDefault);
 144                 monitor.beginTask("DwcA-Export", 10);
 145
 146                 config.setFeatureExclusions(featureExclusions);
 147                 // invoke import
 148                 CdmDefaultExport<DwcaTaxExportConfigurator> dwcaExport = new CdmDefaultExport<>();
 149                 ExportResult result = dwcaExport.invoke(config);
 150
 151                 System.out.println("End export to DWC-A ("+ fileDestination + ")..." + "("+result.getState().toString()+")");
 152                 return result;
 153         }
 154
 155
 156         private DwcaEmlRecord getEmlRecord() {
 157                 DwcaEmlRecord emlRecord = new DwcaEmlRecord();
 158                 emlRecord.setIdentifier("My Identifier");
 159                 emlRecord.setTitle("Flora of cyprus");
 160                 emlRecord.setPublicationDate(new DateTime());
 161                 emlRecord.setExpectedCitation("Expected Citation");
 162                 emlRecord.setAbstractInfo("The abstract");
 163                 emlRecord.setAdditionalInformation("Add info");
 164                 emlRecord.setResourceLanguage(null);
 165                 emlRecord.setResourceUrl(URI.create("http://www.flora-of-cyprus.eu//portal/"));
 166                 emlRecord.setMetaDataLanguage(null);
 167                 emlRecord.setResourceLogoUri(null);
 168                 emlRecord.setCreativeCommonsLicensing(null);
 169                 emlRecord.setProjectTitle("Projekt tit");
 170                 emlRecord.setProjectLead("Proj Lead");
 171                 emlRecord.setProjectDescription("Proj Desc");
 172
 173                 Person person = Person.NewInstance();
 174                 Institution institution = Institution.NewInstance();
 175
 176                 InstitutionalMembership m = person.addInstitutionalMembership(institution, null, null, null);
 177                 emlRecord.setResourceCreator(m);
 178
 179                 return emlRecord;
 180         }
 181
 182         public static void main(String[] args) {
 183                 DwcaExportActivator ex = new DwcaExportActivator();
 184                 ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
 185                 ex.doExport(source);
 186         System.exit(0);
 187         }
 188 }