eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/SideBySidePerspective.java -text
eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/TaxEditorPlugin.java -text
eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/TaxonomicPreferences.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionAddQuickName.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionAddSynonymToTaxon.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionDeleteTaxon.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionMoveTaxon.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionOpenNameEditor.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionOpenNewChildNameEditor.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionPopulatePropertySheet.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionRemoveTaxonFromTree.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ActionSaveTaxon.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/ChangeTaxonToSynonymAction.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/NameTransfer.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/SynonymRelationshipTransfer.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/TaxonTransfer.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/WidgetTransfer.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/cdm/AddBasionymAction.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/cdm/AddMisappliedNameToTaxonAction.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/cdm/ChangeSynonymToMisappliedNameAction.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/cdm/DeleteSynonymFromTaxonAction.java -text
+eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/actions/cdm/TaxonActionFactory.java -text
eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/model/NameEditorInput.java -text
eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/model/NameTreeContentProvider.java -text
eclipseprojects/eu.etaxonomy.taxeditor/src/eu/etaxonomy/taxeditor/model/PropertySheetNode.java -text
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.ui.PlatformUI;\r
+\r
+import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+import eu.etaxonomy.taxeditor.view.NameListView;\r
+import eu.etaxonomy.taxeditor.view.TaxonomicTreeViewer;\r
+\r
+/**\r
+ * Open up a celleditor in the taxonomic tree \r
+ * to add a quickname to taxon\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionAddQuickName extends Action {\r
+ Taxon parentTaxon;\r
+ \r
+ public ActionAddQuickName(Taxon parentTaxon) {\r
+ this.parentTaxon = parentTaxon;\r
+ }\r
+ \r
+ public void run() {\r
+ \r
+ // Create empty Taxon, add it to its parent\r
+ Taxon childTaxon = new Taxon();\r
+ childTaxon.setName(BotanicalName.NewInstance(Rank.GENUS()));\r
+ \r
+ // TODO getTitleCache is currently returning "null", not null\r
+ // hence its being set here - change!\r
+ childTaxon.getName().setTitleCache(null);\r
+ parentTaxon.addTaxonomicChild(childTaxon, null, null);\r
+ \r
+ // Add childTaxon to observable tree list, \r
+ // causing it to appear in the tree\r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().add(childTaxon);\r
+ \r
+ // Open new node\r
+ TaxonomicTreeViewer treeViewer = (TaxonomicTreeViewer) ((NameListView) PlatformUI.getWorkbench().getActiveWorkbenchWindow().getActivePage().\r
+ findView(NameListView.ID)).getTreeViewer(); \r
+ treeViewer.revealTaxon(childTaxon);\r
+ \r
+ // Put cursor in empty node\r
+ treeViewer.editElement(childTaxon, 0);\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+/**\r
+* Copyright (C) 2007 EDIT\r
+* European Distributed Institute of Taxonomy \r
+* http://www.e-taxonomy.eu\r
+* \r
+* The contents of this file are subject to the Mozilla Public License Version 1.1\r
+* See LICENSE.TXT at the top of this package for the full license terms.\r
+*/\r
+\r
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.name.HomotypicalGroup;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.taxon.Synonym;\r
+import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.view.nameviewersupport.TesterooWritableSet;\r
+import eu.etaxonomy.taxeditor.view.propertysheetsupport.NonViralNamePropertySource;\r
+\r
+/**\r
+ * Add a new synonym to a taxon.\r
+ * \r
+ * @author p.ciardelli\r
+ * @created 06.05.2008\r
+ * @version 1.0\r
+ *\r
+ */\r
+public class ActionAddSynonymToTaxon extends Action {\r
+ private static final Logger logger = Logger\r
+ .getLogger(ActionAddSynonymToTaxon.class);\r
+ \r
+ Taxon taxon;\r
+ Synonym synonym;\r
+ \r
+ public ActionAddSynonymToTaxon(Taxon taxon, Synonym synonym) {\r
+ this.taxon = taxon;\r
+ this.synonym = synonym;\r
+ }\r
+\r
+ public ActionAddSynonymToTaxon(Taxon taxon, String synonymNameCache) {\r
+ \r
+ this.taxon = taxon;\r
+ this.synonym = new Synonym();\r
+ \r
+ BotanicalName name = BotanicalName.PARSED_NAME(synonymNameCache);\r
+// name.setHomotypicalGroup(new HomotypicalGroup());\r
+ boolean homoGroupCreated = (name.getHomotypicalGroup() != null);\r
+ logger.warn("Homotypical group automatically created with new name? " + homoGroupCreated);\r
+ this.synonym.setName(name);\r
+} \r
+\r
+ public void run() {\r
+ taxon.addSynonym(synonym, SynonymRelationshipType.HETEROTYPIC_SYNONYM_OF());\r
+ \r
+// TesterooWritableSet.getInstance().add(synonym);\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+/**\r
+* Copyright (C) 2007 EDIT\r
+* European Distributed Institute of Taxonomy \r
+* http://www.e-taxonomy.eu\r
+* \r
+* The contents of this file are subject to the Mozilla Public License Version 1.1\r
+* See LICENSE.TXT at the top of this package for the full license terms.\r
+*/\r
+\r
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+/**\r
+ * Adds tree functionality (get parent, get children) to ObservableListContentProvider;\r
+ * much code was copied almost in tact from parent class due to\r
+ * viewer type restrictions and private settings of variables and methods\r
+ * \r
+ * @author p.ciardelli\r
+ * @created 14.05.2008\r
+ * @version 1.0\r
+ */\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;\r
+import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * Delete this taxon from the CDM\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionDeleteTaxon extends Action {\r
+ private static final Logger logger = Logger.getLogger(ActionDeleteTaxon.class);\r
+ \r
+ Taxon taxon;\r
+ \r
+ public ActionDeleteTaxon(Taxon taxon) {\r
+ this.taxon = taxon;\r
+ }\r
+ \r
+ public void run() {\r
+ Taxon parentTaxon = taxon.getTaxonomicParent();\r
+ for (TaxonRelationship taxonRelation : parentTaxon.getTaxonRelations()) {\r
+ \r
+ TaxonRelationshipType type = taxonRelation.getType();\r
+ Taxon fromTaxon = taxonRelation.getFromTaxon();\r
+ \r
+ if (type.equals(TaxonRelationshipType.TAXONOMICALLY_INCLUDED_IN()) &&\r
+ fromTaxon.equals(taxon)) {\r
+ parentTaxon.removeTaxonRelation(taxonRelation);\r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().remove(taxon);\r
+ TaxEditorPlugin.getDefault().getCdmApp().getTaxonService().saveTaxon(parentTaxon);\r
+ return;\r
+ }\r
+ }\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * Moves taxon in the taxonomic tree by assigning it a new parent\r
+ * and triggering observable tree list update\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionMoveTaxon extends Action {\r
+ Taxon taxon;\r
+ Taxon newParentTaxon;\r
+ \r
+ public ActionMoveTaxon(Taxon taxon, Taxon newParentTaxon) {\r
+ this.taxon = taxon;\r
+ this.newParentTaxon = newParentTaxon;\r
+ }\r
+ \r
+ public void run() {\r
+ \r
+ // TODO Taxon.setParentTaxon(newParentTaxon)\r
+ taxon.setTaxonomicParent(newParentTaxon, null, null);\r
+ \r
+ // Trigger re-draw in list by removing then adding taxon\r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().remove(taxon); \r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().add(taxon);\r
+\r
+ // Save the taxon to the CDM\r
+ TaxEditorPlugin.getDefault().getCdmApp().getTaxonService().saveTaxon(taxon);\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+ package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.ui.IEditorInput;\r
+import org.eclipse.ui.PartInitException;\r
+import org.eclipse.ui.PlatformUI;\r
+\r
+import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+import eu.etaxonomy.taxeditor.UiUtil;\r
+import eu.etaxonomy.taxeditor.view.MultiPageTaxonEditor;\r
+import eu.etaxonomy.taxeditor.model.NameEditorInput;\r
+import eu.etaxonomy.taxeditor.view.LeftPane;\r
+import eu.etaxonomy.taxeditor.view.NameListView;\r
+import eu.etaxonomy.taxeditor.view.TaxonomicTreeViewer;\r
+\r
+/**\r
+ * Opens a name editor for an existing or new taxon\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionOpenNameEditor extends Action {\r
+\r
+ private Taxon taxon;\r
+ public static final String ID = "eu.etaxonomy.taxeditor.actions.opennameeditoraction"; //$NON-NLS-1$\r
+ \r
+ public ActionOpenNameEditor(Taxon taxon) {\r
+ this.taxon = taxon;\r
+ }\r
+\r
+ public ActionOpenNameEditor() {\r
+\r
+ // the text for the menu item\r
+ setText("New taxon");\r
+ \r
+ setId(ID);\r
+ \r
+ this.taxon = new Taxon();\r
+ taxon.setName(BotanicalName.NewInstance(Rank.GENUS()));\r
+ \r
+ }\r
+ \r
+ public void run() {\r
+\r
+ \r
+ // If this is a non-empty taxon being opened for the first time,\r
+ // add to recent names list \r
+ if (taxon.getName().getTitleCache() != null &&\r
+ !TaxEditorPlugin.getDefault().getObservableRecentNamesList().contains(taxon))\r
+ TaxEditorPlugin.getDefault().getObservableRecentNamesList().add(0, taxon);\r
+ \r
+ // If this taxon is not visible in the tree, open node\r
+ ((TaxonomicTreeViewer) ((NameListView) PlatformUI.getWorkbench().getActiveWorkbenchWindow().getActivePage().\r
+ findView(NameListView.ID)).getTreeViewer()).revealTaxon(taxon);\r
+ \r
+ IEditorInput input = new NameEditorInput(taxon);\r
+ try {\r
+ UiUtil.openEditor(input, MultiPageTaxonEditor.ID);\r
+ } catch (PartInitException e) {\r
+ e.printStackTrace();\r
+ } \r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.name.BotanicalName;\r
+import eu.etaxonomy.cdm.model.name.Rank;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+\r
+/**\r
+ * Opens a name editor for a new taxon with a parent taxon\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionOpenNewChildNameEditor extends Action {\r
+\r
+ private Taxon taxon;\r
+ public static final String ID = "eu.etaxonomy.taxeditor.actions.opennameeditoraction"; //$NON-NLS-1$\r
+ \r
+ public ActionOpenNewChildNameEditor(Taxon parentTaxon) {\r
+ \r
+ taxon = new Taxon();\r
+ taxon.setName(BotanicalName.NewInstance(Rank.GENUS()));\r
+ \r
+ // TODO getTitleCache is currently returning "null", not null\r
+ // hence its being set here - change!\r
+ taxon.getName().setTitleCache(null);\r
+ \r
+ parentTaxon.addTaxonomicChild(taxon, null, null);\r
+ }\r
+\r
+ public ActionOpenNewChildNameEditor() {\r
+ setId(ID);\r
+ }\r
+ \r
+ public void run() {\r
+ new ActionOpenNameEditor(taxon).run();\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.jface.viewers.ISelection;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * Convert an object to a structured selection, pass it to the\r
+ * universal property sheet provider.\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionPopulatePropertySheet extends Action {\r
+ TaxonNameBase name;\r
+ private ISelection selection;\r
+ \r
+ public ActionPopulatePropertySheet(ISelection selection) {\r
+ this.selection = selection;\r
+ }\r
+ \r
+ public void run() {\r
+ TaxEditorPlugin.getDefault().getProvider().setSelection(this.selection);\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * Remove a Taxon from the tree without removing it from\r
+ * the CDM, i.e. when a temporary Taxon has been created for\r
+ * quickname\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionRemoveTaxonFromTree extends Action {\r
+ Taxon taxon;\r
+ \r
+ public ActionRemoveTaxonFromTree(Taxon taxon) {\r
+ this.taxon = taxon;\r
+ }\r
+ \r
+ public void run() {\r
+ \r
+ // Remove Taxon from taxon tree list\r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().remove(taxon);\r
+ \r
+ taxon = null;\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * Commit any changes to this taxon to the CDM\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class ActionSaveTaxon extends Action {\r
+ private static final Logger logger = Logger.getLogger(ActionSaveTaxon.class);\r
+ \r
+ Taxon taxon;\r
+ \r
+ public ActionSaveTaxon(Taxon taxon) {\r
+ this.taxon = taxon;\r
+ }\r
+ \r
+ public void run() {\r
+ // If this is a new taxon, add it to the recent names list;\r
+ // if it is already in the tree, remove then re-add it\r
+ // to force a re-sort\r
+ if (!TaxEditorPlugin.getDefault().getObservableTaxonTreeList().contains(taxon)) {\r
+ TaxEditorPlugin.getDefault().getObservableRecentNamesList().add(0, taxon);\r
+ } else {\r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().remove(taxon);\r
+ } \r
+ TaxEditorPlugin.getDefault().getObservableTaxonTreeList().add(taxon);\r
+\r
+ // Save the taxon to the CDM\r
+ TaxEditorPlugin.getDefault().getCdmApp().getTaxonService().saveTaxon(taxon);\r
+ \r
+ // Notify taxon listeners in case name has been updated\r
+ // NOTE: I took this out, and for some reason, the names started disappearing\r
+ // from the tax. tree on save!\r
+ taxon.firePropertyChange("name", null, null);\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy \r
+ * http://www.e-taxonomy.eu\r
+ * \r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.jface.resource.ImageDescriptor;\r
+import org.eclipse.swt.widgets.Shell;\r
+import org.eclipse.ui.IEditorInput;\r
+import org.eclipse.ui.IEditorPart;\r
+import org.eclipse.ui.PartInitException;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.ITaxEditorConstants;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+import eu.etaxonomy.taxeditor.UiUtil;\r
+import eu.etaxonomy.taxeditor.model.CdmUtil;\r
+import eu.etaxonomy.taxeditor.model.NameEditorInput;\r
+import eu.etaxonomy.taxeditor.view.SelectTaxonDialog;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 26.05.2008\r
+ * @version 1.0\r
+ */\r
+public class ChangeTaxonToSynonymAction extends Action {\r
+ private static final Logger logger = Logger\r
+ .getLogger(ChangeTaxonToSynonymAction.class);\r
+\r
+ private static String text = "Change this taxon to a synonym";\r
+ private ImageDescriptor image = TaxEditorPlugin.getDefault()\r
+ .getImageRegistry().getDescriptor(ITaxEditorConstants.MOVE_ICON);\r
+\r
+ private Taxon oldTaxon;\r
+\r
+ private ChangeTaxonToSynonymAction() {\r
+ super(text);\r
+ setImageDescriptor(image);\r
+ }\r
+\r
+ public ChangeTaxonToSynonymAction(Taxon oldTaxon) {\r
+ this();\r
+ this.oldTaxon = oldTaxon;\r
+ }\r
+\r
+ public void run() {\r
+ \r
+ IEditorPart oldEditor = null;\r
+ \r
+ try { \r
+ // Prompt user "Would you like to save?" before showing dialog\r
+ // "Cancel" cancels action - "No" does not\r
+ IEditorInput oldEditorInput = new NameEditorInput(oldTaxon);\r
+ oldEditor = UiUtil.getEditorByInput(oldEditorInput);\r
+ if (UiUtil.getActivePage().saveEditor(oldEditor, true) == false) {\r
+ return;\r
+ }\r
+ } catch (PartInitException e1) {\r
+ e1.printStackTrace();\r
+ }\r
+ \r
+ // Get destination taxon from dialog\r
+ Shell shell = UiUtil.getShell();\r
+ SelectTaxonDialog dialog = new SelectTaxonDialog(shell, SelectTaxonDialog.TAXON_TO_SYNONYM);\r
+ Taxon destinationTaxon = dialog.open(oldTaxon);\r
+ \r
+ // Abort action if user cancelled dialog without choosing a taxon\r
+ if (destinationTaxon == null) {\r
+ return;\r
+ }\r
+ \r
+ // Move oldTaxon in CDM\r
+ TaxonNameBase synonymName = oldTaxon.getName();\r
+ SynonymRelationshipType synonymType;\r
+ if (CdmUtil.isNameHomotypic(synonymName, destinationTaxon)) {\r
+ destinationTaxon.addHomotypicSynonymName(synonymName); \r
+ } else {\r
+ destinationTaxon.addHeterotypicSynonymName(synonymName);\r
+ }\r
+ \r
+ // TODO move any children, descriptions, synonyms\r
+ // TODO delete taxon from CDM, tree, recent names list \r
+ \r
+ // Close open editor for oldTaxon without forcing save.\r
+ // User has already saved or declined to do so above.\r
+ try {\r
+ UiUtil.closeEditor(oldEditor, false);\r
+ } catch (PartInitException e) {\r
+ e.printStackTrace();\r
+ }\r
+ \r
+ // Open editor for new oldTaxon\r
+ new ActionSaveTaxon(destinationTaxon).run();\r
+ new ActionOpenNameEditor(destinationTaxon).run();\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.swt.dnd.ByteArrayTransfer;\r
+import org.eclipse.swt.dnd.TransferData;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+\r
+/**\r
+ * For drag and drop - a drag widget with this transfer type can only be dropped onto\r
+ * a drop widget with the same type.\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class NameTransfer extends ByteArrayTransfer {\r
+\r
+ private static final String TYPENAME = "name_type";\r
+ private static final int NAMETYPEID = registerType (TYPENAME); \r
+ private static final NameTransfer INSTANCE = new NameTransfer();\r
+ \r
+ /*\r
+ * The object associated with this transfer event\r
+ */\r
+ private TaxonNameBase name;\r
+ \r
+ /*\r
+ * Returns the singleton\r
+ */\r
+ public static NameTransfer getInstance() {\r
+ return INSTANCE;\r
+ }\r
+ /*\r
+ * Set transfer data for local use\r
+ */\r
+ public void setName(TaxonNameBase name) {\r
+ this.name = name;\r
+ }\r
+ /*\r
+ * Returns the local transfer data\r
+ */\r
+ public TaxonNameBase getName() {\r
+ return name;\r
+ }\r
+ \r
+ /* \r
+ * The type ID is used to identify this transfer\r
+ */\r
+ @Override\r
+ protected int[] getTypeIds() {\r
+ return new int[] { NAMETYPEID };\r
+ }\r
+\r
+ @Override\r
+ protected String[] getTypeNames() {\r
+ return new String[] { TYPENAME } ;\r
+ }\r
+\r
+ @Override\r
+ protected void javaToNative(Object object, TransferData transferData) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See nativeToJava below\r
+ byte[] check = TYPENAME.getBytes();\r
+ super.javaToNative(check, transferData);\r
+ }\r
+\r
+ @Override\r
+ protected Object nativeToJava(TransferData transferData) {\r
+ Object result = super.nativeToJava(transferData);\r
+ if (isInvalidNativeType(result)) {\r
+ throw new RuntimeException(); //$NON-NLS-1$\r
+ }\r
+ return name;\r
+ }\r
+ \r
+ private boolean isInvalidNativeType(Object result) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See javaToNative above\r
+ return !(result instanceof byte[])\r
+ || !TYPENAME.equals(new String((byte[]) result));\r
+ }\r
+}\r
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.swt.dnd.ByteArrayTransfer;\r
+import org.eclipse.swt.dnd.TransferData;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.SynonymRelationship;\r
+import eu.etaxonomy.cdm.model.taxon.TaxonBase;\r
+\r
+/**\r
+ * For drag and drop - a drag widget with this transfer type \r
+ * can only be dropped onto a drop widget with the same type.\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class SynonymRelationshipTransfer extends ByteArrayTransfer {\r
+\r
+ private static final String RELATIONTYPENAME = "relation_type";\r
+ private static final int RELATIONTYPEID = registerType (RELATIONTYPENAME); \r
+ private static final SynonymRelationshipTransfer INSTANCE = new SynonymRelationshipTransfer();\r
+ \r
+ /*\r
+ * The object associated with this transfer event\r
+ */\r
+ private SynonymRelationship synonymRelationship;\r
+ \r
+ /*\r
+ * Returns the singleton\r
+ */\r
+ public static SynonymRelationshipTransfer getInstance() {\r
+ return INSTANCE;\r
+ }\r
+ /*\r
+ * Set transfer data for local use\r
+ */\r
+ public void setSynonymRelationship(SynonymRelationship synonymRelationship) {\r
+ this.synonymRelationship = synonymRelationship;\r
+ }\r
+ /*\r
+ * Returns the local transfer data\r
+ */\r
+ public SynonymRelationship getSynonymRelationship() {\r
+ return synonymRelationship;\r
+ }\r
+ \r
+ /* \r
+ * The type ID is used to identify this transfer\r
+ */\r
+ @Override\r
+ protected int[] getTypeIds() {\r
+ return new int[] { RELATIONTYPEID };\r
+ }\r
+\r
+ @Override\r
+ protected String[] getTypeNames() {\r
+ return new String[] { RELATIONTYPENAME } ;\r
+ }\r
+\r
+ @Override\r
+ protected void javaToNative(Object object, TransferData transferData) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See nativeToJava below\r
+ byte[] check = RELATIONTYPENAME.getBytes();\r
+ super.javaToNative(check, transferData);\r
+ }\r
+\r
+ @Override\r
+ protected Object nativeToJava(TransferData transferData) {\r
+ Object result = super.nativeToJava(transferData);\r
+ if (isInvalidNativeType(result)) {\r
+ throw new RuntimeException(); //$NON-NLS-1$\r
+ }\r
+ return synonymRelationship;\r
+ }\r
+ \r
+ private boolean isInvalidNativeType(Object result) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See javaToNative above\r
+ return !(result instanceof byte[])\r
+ || !RELATIONTYPENAME.equals(new String((byte[]) result));\r
+ }\r
+}\r
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.swt.dnd.ByteArrayTransfer;\r
+import org.eclipse.swt.dnd.TransferData;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.TaxonBase;\r
+\r
+/**\r
+ * For drag and drop - a drag widget with this transfer type can only be dropped onto\r
+ * a drop widget with the same type.\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class TaxonTransfer extends ByteArrayTransfer {\r
+\r
+ private static final String TAXONTYPENAME = "taxon_type";\r
+ private static final int TAXONTYPEID = registerType (TAXONTYPENAME); \r
+ private static final TaxonTransfer INSTANCE = new TaxonTransfer();\r
+ \r
+ /*\r
+ * The object associated with this transfer event\r
+ */\r
+ private TaxonBase taxonBase;\r
+ \r
+ /*\r
+ * Returns the singleton\r
+ */\r
+ public static TaxonTransfer getInstance() {\r
+ return INSTANCE;\r
+ }\r
+ /*\r
+ * Set transfer data for local use\r
+ */\r
+ public void setTaxon(TaxonBase taxon) {\r
+ this.taxonBase = taxon;\r
+ }\r
+ /*\r
+ * Returns the local transfer data\r
+ */\r
+ public TaxonBase getTaxon() {\r
+ return taxonBase;\r
+ }\r
+ \r
+ /* \r
+ * The type ID is used to identify this transfer\r
+ */\r
+ @Override\r
+ protected int[] getTypeIds() {\r
+ return new int[] { TAXONTYPEID };\r
+ }\r
+\r
+ @Override\r
+ protected String[] getTypeNames() {\r
+ return new String[] { TAXONTYPENAME } ;\r
+ }\r
+\r
+ @Override\r
+ protected void javaToNative(Object object, TransferData transferData) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See nativeToJava below\r
+ byte[] check = TAXONTYPENAME.getBytes();\r
+ super.javaToNative(check, transferData);\r
+ }\r
+\r
+ @Override\r
+ protected Object nativeToJava(TransferData transferData) {\r
+ Object result = super.nativeToJava(transferData);\r
+ if (isInvalidNativeType(result)) {\r
+ throw new RuntimeException(); //$NON-NLS-1$\r
+ }\r
+ return taxonBase;\r
+ }\r
+ \r
+ private boolean isInvalidNativeType(Object result) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See javaToNative above\r
+ return !(result instanceof byte[])\r
+ || !TAXONTYPENAME.equals(new String((byte[]) result));\r
+ }\r
+}\r
--- /dev/null
+package eu.etaxonomy.taxeditor.actions;\r
+\r
+import org.eclipse.swt.dnd.ByteArrayTransfer;\r
+import org.eclipse.swt.dnd.TransferData;\r
+import org.eclipse.swt.widgets.Widget;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.TaxonBase;\r
+\r
+/**\r
+ * For drag and drop - a drag widget with this transfer type can only be dropped onto\r
+ * a drop widget with the same type.\r
+ * \r
+ * @author p.ciardelli\r
+ *\r
+ */\r
+public class WidgetTransfer extends ByteArrayTransfer {\r
+\r
+ private static final String WIDGETTYPENAME = "widget_type";\r
+ private static final int WIDGETTYPEID = registerType (WIDGETTYPENAME); \r
+ private static final WidgetTransfer INSTANCE = new WidgetTransfer();\r
+ \r
+ /*\r
+ * The object associated with this transfer event\r
+ */\r
+ private Widget widget;\r
+ \r
+ /*\r
+ * Returns the singleton\r
+ */\r
+ public static WidgetTransfer getInstance() {\r
+ return INSTANCE;\r
+ }\r
+ /*\r
+ * Set transfer data for local use\r
+ */\r
+ public void setWidget(Widget widget) {\r
+ this.widget = widget;\r
+ }\r
+ /*\r
+ * Returns the local transfer data\r
+ */\r
+ public Widget getWidget() {\r
+ return widget;\r
+ }\r
+ \r
+ /* \r
+ * The type ID is used to identify this transfer\r
+ */\r
+ @Override\r
+ protected int[] getTypeIds() {\r
+ return new int[] { WIDGETTYPEID };\r
+ }\r
+\r
+ @Override\r
+ protected String[] getTypeNames() {\r
+ return new String[] { WIDGETTYPENAME } ;\r
+ }\r
+\r
+ @Override\r
+ protected void javaToNative(Object object, TransferData transferData) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See nativeToJava below\r
+ byte[] check = WIDGETTYPENAME.getBytes();\r
+ super.javaToNative(check, transferData);\r
+ }\r
+\r
+ @Override\r
+ protected Object nativeToJava(TransferData transferData) {\r
+ Object result = super.nativeToJava(transferData);\r
+ if (isInvalidNativeType(result)) {\r
+ throw new RuntimeException(); //$NON-NLS-1$\r
+ }\r
+ return widget;\r
+ }\r
+ \r
+ private boolean isInvalidNativeType(Object result) {\r
+ // No encoding needed since this is a hardcoded string read and written\r
+ // in the same process.\r
+ // See javaToNative above\r
+ return !(result instanceof byte[])\r
+ || !WIDGETTYPENAME.equals(new String((byte[]) result));\r
+ }\r
+}\r
--- /dev/null
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy \r
+ * http://www.e-taxonomy.eu\r
+ * \r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.taxeditor.actions.cdm;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.core.runtime.Assert;\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.jface.resource.ImageDescriptor;\r
+\r
+import eu.etaxonomy.cdm.model.name.NameRelationshipType;\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.ITaxEditorConstants;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 26.05.2008\r
+ * @version 1.0\r
+ */\r
+public class AddBasionymAction extends Action {\r
+ private static final Logger logger = Logger\r
+ .getLogger(AddBasionymAction.class);\r
+\r
+ private static String text = "Set to taxon's basionym";\r
+ private ImageDescriptor image = TaxEditorPlugin.getDefault()\r
+ .getImageRegistry()\r
+ .getDescriptor(ITaxEditorConstants.BASIONYM_ICON);\r
+\r
+ private TaxonNameBase basionymName;\r
+ private Taxon taxon;\r
+\r
+ public AddBasionymAction() {\r
+ super(text);\r
+ setImageDescriptor(image);\r
+ }\r
+\r
+ public AddBasionymAction(TaxonNameBase basionymName, Taxon taxon) {\r
+ this();\r
+ this.basionymName = basionymName;\r
+ this.taxon = taxon;\r
+ }\r
+\r
+ public void run() {\r
+ TaxonNameBase taxonName = taxon.getName();\r
+ Assert.isNotNull(taxonName);\r
+ taxonName.addRelationshipFromName(basionymName, NameRelationshipType\r
+ .BASIONYM(), null);\r
+ \r
+ firePropertyChange(ITaxEditorConstants.BASIONYM, null, basionymName);\r
+ }\r
+}\r
--- /dev/null
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy \r
+ * http://www.e-taxonomy.eu\r
+ * \r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.taxeditor.actions.cdm;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.core.runtime.Assert;\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.jface.resource.ImageDescriptor;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.reference.ReferenceBase;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.ITaxEditorConstants;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 22.05.2008\r
+ * @version 1.0\r
+ */\r
+public class AddMisappliedNameToTaxonAction extends Action {\r
+ private static final Logger logger = Logger\r
+ .getLogger(AddMisappliedNameToTaxonAction.class);\r
+\r
+ private static String text = "Add misapplied name to taxon";\r
+ private ImageDescriptor image = TaxEditorPlugin.getDefault()\r
+ .getImageRegistry().getDescriptor(\r
+ ITaxEditorConstants.MISAPPLIED_NAME_ICON); \r
+ \r
+ private TaxonNameBase name;\r
+ private ReferenceBase citation = null;\r
+ private String microcitation = null;\r
+ private Taxon taxon;\r
+\r
+ private Taxon misappliedNameTaxon;\r
+\r
+ public AddMisappliedNameToTaxonAction(TaxonNameBase name, ReferenceBase citation,\r
+ String microcitation, Taxon taxon) {\r
+ super();\r
+ this.name = name;\r
+ this.citation = citation;\r
+ this.microcitation = microcitation;\r
+ this.taxon = taxon;\r
+ }\r
+\r
+ public AddMisappliedNameToTaxonAction(TaxonNameBase name, Taxon taxon) {\r
+ super();\r
+ this.name = name;\r
+ this.taxon = taxon;\r
+ }\r
+\r
+ public void run() {\r
+ Assert.isNotNull(taxon); \r
+ taxon.addMisappliedName(getMisappliedNameTaxon(), citation, microcitation);\r
+ }\r
+ \r
+ public void setCitation(ReferenceBase citation) {\r
+ this.citation = citation; \r
+ }\r
+ \r
+ public void setMicrocitation(String microcitation) {\r
+ this.microcitation = microcitation; \r
+ } \r
+\r
+ public Taxon getMisappliedNameTaxon() {\r
+ if (misappliedNameTaxon == null) {\r
+ misappliedNameTaxon = Taxon.NewInstance(name, null); \r
+ }\r
+ return misappliedNameTaxon;\r
+ }\r
+}\r
--- /dev/null
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy \r
+ * http://www.e-taxonomy.eu\r
+ * \r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.taxeditor.actions.cdm;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+import org.eclipse.jface.resource.ImageDescriptor;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.taxon.Synonym;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+import eu.etaxonomy.taxeditor.ITaxEditorConstants;\r
+import eu.etaxonomy.taxeditor.TaxEditorPlugin;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 22.05.2008\r
+ * @version 1.0\r
+ */\r
+public class ChangeSynonymToMisappliedNameAction extends Action {\r
+ private static final Logger logger = Logger\r
+ .getLogger(ChangeSynonymToMisappliedNameAction.class);\r
+\r
+ private static String text = "Change synonym to misapplied name";\r
+ private ImageDescriptor image = TaxEditorPlugin.getDefault()\r
+ .getImageRegistry().getDescriptor(\r
+ ITaxEditorConstants.MISAPPLIED_NAME_ICON);\r
+\r
+ DeleteSynonymFromTaxonAction deleteSynonymAction;\r
+ AddMisappliedNameToTaxonAction addMisappliedNameAction;\r
+\r
+ private Synonym synonym;\r
+ private Taxon taxon;\r
+ private Taxon misappliedNameTaxon;\r
+ \r
+ private ChangeSynonymToMisappliedNameAction() {\r
+ super(text);\r
+ setImageDescriptor(image);\r
+ }\r
+ \r
+ public ChangeSynonymToMisappliedNameAction(Synonym synonym, Taxon taxon) {\r
+ this();\r
+ this.synonym = synonym;\r
+ this.taxon = taxon;\r
+ }\r
+ \r
+ public void run() {\r
+ TaxonNameBase name = synonym.getName();\r
+ \r
+ deleteSynonymAction = new DeleteSynonymFromTaxonAction(synonym, taxon);\r
+ deleteSynonymAction.run();\r
+ \r
+ addMisappliedNameAction = new AddMisappliedNameToTaxonAction(name, taxon);\r
+ addMisappliedNameAction.run();\r
+ misappliedNameTaxon = addMisappliedNameAction.getMisappliedNameTaxon();\r
+ \r
+ firePropertyChange(ITaxEditorConstants.MISAPPLIED_NAME, null, misappliedNameTaxon); \r
+ }\r
+\r
+ public Taxon getMisappliedNameTaxon() {\r
+ return misappliedNameTaxon;\r
+ }\r
+}
\ No newline at end of file
--- /dev/null
+/**\r
+* Copyright (C) 2007 EDIT\r
+* European Distributed Institute of Taxonomy \r
+* http://www.e-taxonomy.eu\r
+* \r
+* The contents of this file are subject to the Mozilla Public License Version 1.1\r
+* See LICENSE.TXT at the top of this package for the full license terms.\r
+*/\r
+\r
+package eu.etaxonomy.taxeditor.actions.cdm;\r
+\r
+import org.apache.log4j.Logger;\r
+import org.eclipse.jface.action.Action;\r
+\r
+import eu.etaxonomy.cdm.model.taxon.Synonym;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 22.05.2008\r
+ * @version 1.0\r
+ */\r
+public class DeleteSynonymFromTaxonAction extends Action {\r
+ private static final Logger logger = Logger.getLogger(DeleteSynonymFromTaxonAction.class);\r
+ \r
+ private Synonym synonym;\r
+ private Taxon taxon;\r
+\r
+ public DeleteSynonymFromTaxonAction(Synonym synonym, Taxon taxon) {\r
+ super();\r
+ this.synonym = synonym;\r
+ this.taxon = taxon;\r
+ }\r
+ \r
+ public void run() {\r
+ taxon.removeSynonym(synonym);\r
+ synonym.setName(null);\r
+ }\r
+\r
+ public Synonym getSynonym() {\r
+ return synonym;\r
+ }\r
+\r
+ public Taxon getTaxon() {\r
+ return taxon;\r
+ }\r
+}\r
--- /dev/null
+/**\r
+ * Copyright (C) 2007 EDIT\r
+ * European Distributed Institute of Taxonomy \r
+ * http://www.e-taxonomy.eu\r
+ * \r
+ * The contents of this file are subject to the Mozilla Public License Version 1.1\r
+ * See LICENSE.TXT at the top of this package for the full license terms.\r
+ */\r
+\r
+package eu.etaxonomy.taxeditor.actions.cdm;\r
+\r
+import org.apache.log4j.Logger;\r
+\r
+import eu.etaxonomy.cdm.model.name.TaxonNameBase;\r
+import eu.etaxonomy.cdm.model.reference.ReferenceBase;\r
+import eu.etaxonomy.cdm.model.taxon.Synonym;\r
+import eu.etaxonomy.cdm.model.taxon.Taxon;\r
+\r
+/**\r
+ * @author p.ciardelli\r
+ * @created 23.05.2008\r
+ * @version 1.0\r
+ */\r
+public class TaxonActionFactory {\r
+ private static final Logger logger = Logger\r
+ .getLogger(TaxonActionFactory.class);\r
+\r
+ Taxon taxon;\r
+\r
+ private TaxonActionFactory(Taxon taxon) {\r
+ this.taxon = taxon;\r
+ }\r
+\r
+ public static TaxonActionFactory newInstance(Taxon taxon) {\r
+ return new TaxonActionFactory(taxon);\r
+ }\r
+ \r
+ public void deleteSynonymFromTaxon(Synonym synonym, Taxon taxon) {\r
+ new DeleteSynonymFromTaxonAction(synonym, taxon).run();\r
+ }\r
+\r
+ public Taxon addMisappliedNameToTaxon(TaxonNameBase name,\r
+ ReferenceBase citation, String microcitation, Taxon taxon) {\r
+ AddMisappliedNameToTaxonAction misappliedNameAction = new AddMisappliedNameToTaxonAction(\r
+ name, null, null, taxon);\r
+ misappliedNameAction.run();\r
+ Taxon misappliedNameTaxon = misappliedNameAction\r
+ .getMisappliedNameTaxon();\r
+ return misappliedNameTaxon;\r
+ }\r
+\r
+}\r
BGBM BDI Projects / taxeditor.git / commitdiff