+++ /dev/null
-/**
- * Copyright (C) 2011 EDIT
- * European Distributed Institute of Taxonomy
- * http://www.e-taxonomy.eu
- *
- * The contents of this file are subject to the Mozilla Public License Version 1.1
- * See LICENSE.TXT at the top of this package for the full license terms.
- */
-
-package eu.etaxonomy.taxeditor.view.detail;
-
-import java.util.Set;
-
-import org.eclipse.jface.viewers.ISelection;
-import org.eclipse.jface.viewers.SelectionChangedEvent;
-import org.eclipse.jface.viewers.TreeNode;
-import org.eclipse.swt.SWT;
-import org.eclipse.swt.widgets.Composite;
-import org.eclipse.ui.forms.widgets.ExpandableComposite;
-
-import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
-import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
-import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
-import eu.etaxonomy.cdm.model.agent.Person;
-import eu.etaxonomy.cdm.model.agent.Team;
-import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
-import eu.etaxonomy.cdm.model.common.DefinedTermBase;
-import eu.etaxonomy.cdm.model.common.Group;
-import eu.etaxonomy.cdm.model.common.Marker;
-import eu.etaxonomy.cdm.model.common.TermVocabulary;
-import eu.etaxonomy.cdm.model.common.User;
-import eu.etaxonomy.cdm.model.description.CategoricalData;
-import eu.etaxonomy.cdm.model.description.DescriptionBase;
-import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
-import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
-import eu.etaxonomy.cdm.model.description.SpecimenDescription;
-import eu.etaxonomy.cdm.model.media.Media;
-import eu.etaxonomy.cdm.model.molecular.DnaSample;
-import eu.etaxonomy.cdm.model.molecular.Sequence;
-import eu.etaxonomy.cdm.model.molecular.SingleRead;
-import eu.etaxonomy.cdm.model.name.TaxonName;
-import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
-import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
-import eu.etaxonomy.cdm.model.occurrence.MediaSpecimen;
-import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;
-import eu.etaxonomy.cdm.model.reference.Reference;
-import eu.etaxonomy.cdm.model.taxon.TaxonBase;
-import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
-import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
-import eu.etaxonomy.cdm.persistence.hibernate.CdmDataChangeMap;
-import eu.etaxonomy.taxeditor.model.AbstractUtility;
-import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
-import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
-import eu.etaxonomy.taxeditor.model.MessagingUtils;
-import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
-import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
-import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
-import eu.etaxonomy.taxeditor.store.UsageTermCollection;
-import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
-import eu.etaxonomy.taxeditor.ui.element.RootElement;
-import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.agent.TeamDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.agent.TeamOrPersonBaseDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.common.ReferencedEntityDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.description.DescriptionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementMediaSection;
-import eu.etaxonomy.taxeditor.ui.section.description.DescriptionElementSourceSection;
-import eu.etaxonomy.taxeditor.ui.section.description.DescriptionSourceSection;
-import eu.etaxonomy.taxeditor.ui.section.description.MediaDetailsSection;
-import eu.etaxonomy.taxeditor.ui.section.description.NaturalLanguageSection;
-import eu.etaxonomy.taxeditor.ui.section.description.ScopeSection;
-import eu.etaxonomy.taxeditor.ui.section.feature.FeatureDistributionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.grantedAuthority.GrantedAuthorityDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.group.GroupDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.group.MemberDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.key.PolytomousKeyNodeDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.name.NameRelationshipDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.name.NomenclaturalStatusSection;
-import eu.etaxonomy.taxeditor.ui.section.name.NonViralNameDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.name.ProtologueSection;
-import eu.etaxonomy.taxeditor.ui.section.name.TypeDesignationSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitBaseDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.DerivedUnitGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.DeterminationDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.EmptySection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.FieldUnitGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.association.DerivedUnitTypeDesignationSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSamplePreparationPreservationSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceContigFileCollectionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SequenceReferenceCollectionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SingleReadPherogramCollectionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.TissueSampleGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.media.MediaSpecimenGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.reference.NomenclaturalReferenceDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.reference.ReferenceDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.supplemental.RightsSection;
-import eu.etaxonomy.taxeditor.ui.section.supplemental.identifier.DerivedUnitFacadeIdentifierSection;
-import eu.etaxonomy.taxeditor.ui.section.taxon.ParsingMessagesSection;
-import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonBaseDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.taxon.TaxonRelationshipDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.user.GroupsByUserDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.user.UserDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.userecords.UseRecordDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.vocabulary.TermVocabularyDetailSection;
-import eu.etaxonomy.taxeditor.view.AbstractCdmDataViewer;
-import eu.etaxonomy.taxeditor.view.AbstractCdmViewPart;
-
-/**
- *
- * The DetailsViewer handles the content of the details view (
- * {@link DetailsViewPart}).<br>
- * Depending on the type of the selected element the section of the details view
- * are created.
- *
- * @author n.hoffmann
- * @created Feb 12, 2010
- * @version 1.0
- */
-public class DetailsViewer extends AbstractCdmDataViewer {
-
- private ISelection selection;
-
- public DetailsViewer(Composite parent, AbstractCdmViewPart viewPart) {
- super(parent, viewPart);
- }
-
- // START HACK TO MAKE THE DERIVED UNIT FACADE WORK
- // since we are getting implementations of DerivedUnitBase from the bulk
- // editor
- // and not derived unit facade objects,
-
- @Override
- public void setInput(Object input) {
-
- if(input instanceof TreeNode){
- input = ((TreeNode) input).getValue();
- }
- if(input instanceof GbifResponse){
- input = ((GbifResponse) input).getDerivedUnitFacade();
- }
- if (input.getClass().equals(DerivedUnit.class)) {
- DerivedUnit derivedUnit = (DerivedUnit)input;
- try {
- input = DerivedUnitFacade.NewInstance(derivedUnit,
- PreferencesUtil.getDerivedUnitConfigurator());
- } catch (DerivedUnitFacadeNotSupportedException e) {
-// MessagingUtils.error(getClass(), e); //nothing should happen, later on the Details View will show an according information that it is not possible to open this data
- }
- }
- else if(input instanceof FieldUnit){
- input = DerivedUnitFacade.NewInstance(SpecimenOrObservationType.FieldUnit, (FieldUnit) input);
- }
- super.setInput(input);
- }
-
- @Override
- protected void markViewPartDirty() {
- if (getInput() instanceof DerivedUnitFacade) {
- DerivedUnitFacade facade = (DerivedUnitFacade) getInput();
- if(facade.innerDerivedUnit()!=null){
- getViewPart().changed(facade.innerDerivedUnit());
- }
- else if(facade.innerFieldUnit()!=null){
- getViewPart().changed(facade.innerFieldUnit());
- }
- }
- else{
- super.markViewPartDirty();
- }
- }
-
- // END HACK TO MAKE THE DERIVED UNIT FACADE WORK
-
-
- /** {@inheritDoc} */
- @Override
- protected void showParts() {
- // FIXME (CM) : Need to clean out this code.
- // Too much type checking to decide which detail view to display.
- // Need to build in a mechanism where navigators / editors are 'aware'
- // of the corresponding detail viewer.
-
- Object input = getInput();
-
- destroySections();
- if (input instanceof TaxonBase) {
- if(((TaxonBase) input).getName()==null){
- createEmptySection(rootElement);
- }
- else{
- createTaxonSections(rootElement);
- }
-
- } else if (input instanceof TaxonName) {
- createNameSections(rootElement);
-
- } else if (input instanceof Reference) {
- createReferenceSections(rootElement);
-
- } else if (input instanceof Team) {
- createTeamDetailSection(rootElement);
-
- } else if (input instanceof Person) {
- createPersonDetailSection(rootElement);
-
- } else if (input instanceof TeamOrPersonBase) {
- createTeamOrPersonBaseDetailSection(rootElement);
-
- } else if (input instanceof DescriptionBase) {
- if(input instanceof SpecimenDescription){
- //TODO: add more sections to DetailsView for SpecimenDescription
- createSpecimenDescriptionSection(rootElement);
- }
- else{
- Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
-
- Boolean isUseDescription = false;
- for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
- isUseDescription = true;
- }
- }
- if (((DescriptionBase<?>) input).isImageGallery()) {
- createImageGallerySection(rootElement);
-
- } else if (isUseDescription) {
- createUseDescriptionSection(rootElement);
- } else {
- createDescriptionSection(rootElement);
-
- }
- }
- } else if (input instanceof DescriptionElementBase) {
- Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
-
- Boolean isUseDescription = false;
- for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
- isUseDescription = true;
- }
- }
-
- if (isUseDescription == true && input instanceof CategoricalData) {
- createUseRecordSection(rootElement);
- } else {
- createDescriptionElementSection(rootElement);
- }
-
- } else if (input instanceof Media) {
- createMediaElementSection(rootElement);
-
- } else if (input instanceof DerivedUnitFacade) {
- if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
- if(((DerivedUnitFacade) input).innerFieldUnit()==null){
- MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
- }
- else{
- createFieldUnitSection(rootElement);
- }
- }
- else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
- if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
- MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
- }
- else{
- createDerivedUnitBaseElementSection(rootElement);
- }
- }
- else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
- //TissueSample should only be created by using it's own class
- //in future using only one class with different SpecimenOrObservationTypes is desired
- createTissueSampleSection(rootElement);
- }
- else{
- createDerivedUnitBaseElementSection(rootElement);
- }
- } else if (input instanceof DnaSample){
- DnaSample dnaSample = (DnaSample)input;
- if(dnaSample.getRecordBasis()==SpecimenOrObservationType.TissueSample){
- createTissueSampleSection(rootElement);
- }
- else if(dnaSample.getRecordBasis()==SpecimenOrObservationType.DnaSample){
- createDnaSampleSection(rootElement);
- }
- } else if (input instanceof MediaSpecimen){
- createMediaSpecimenSection(rootElement);
- }
- else if(input instanceof Sequence){
- createSequenceSection(rootElement);
- }
- else if(input instanceof SingleRead){
- createSingleReadSection(rootElement);
- }
- else if (input instanceof FeatureNodeContainer) {
- createFeatureDistributionSection(rootElement);
-
- }else if ((input instanceof PolytomousKeyNode) || (input instanceof PolytomousKeyRelationship)) {
- createPolytomousKeyNodeSection(rootElement);
- } else if (input instanceof User) {
- createUserSection(rootElement);
- } else if (input instanceof Group) {
- createGroupSection(rootElement);
- } else if (input instanceof TaxonRelationship && ((TaxonRelationship)input).getType().equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {
- createMisappliedNameSection(rootElement);
- }else if (input instanceof TaxonRelationship ) {
- createTaxonRelationshipSection(rootElement);
- } else if (input instanceof TermVocabulary) {
- createTermVocabularySection(rootElement);
- } else if (input instanceof DefinedTermBase) {
- createDefinedTermSection(rootElement);
- }
- else {
- createEmptySection(rootElement);
- }
- layout();
-
- }
-
-
- private void createEmptySection(RootElement parent) {
- destroySections();
-
- EmptySection emptySection = formFactory.createEmptySection(formFactory, parent, SWT.NONE);
-
- addPart(emptySection);
- }
-
- private void createGroupSection(RootElement parent) {
- destroySections();
-
- GroupDetailSection groupDetailSection = formFactory.createGroupDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE| ExpandableComposite.EXPANDED);
- MemberDetailSection memberDetailSection = formFactory.createMemberDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- GrantedAuthorityDetailSection grantedAuthorityDetailSection = formFactory.createGrantedAuthorityDetailSection(getConversationHolder(), parent,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(groupDetailSection);
- addPart(memberDetailSection);
- addPart(grantedAuthorityDetailSection);
- }
-
- /** {@inheritDoc} */
- @Override
- public ISelection getSelection() {
- return selection;
- }
-
- /** {@inheritDoc} */
- @Override
- public void setSelection(ISelection selection, boolean reveal) {
-
- this.selection = selection;
-
- if(this.selection!=null){
- SelectionChangedEvent selectionChangedEvent = new SelectionChangedEvent(this, selection);
- fireSelectionChanged(selectionChangedEvent);
- }
-
- }
-
- private void createTaxonSections(RootElement parent) {
- destroySections();
-
- ParsingMessagesSection parsingMessagesSection = formFactory.createParsingMessagesSection(getConversationHolder(), parent, this,
- ExpandableComposite.EXPANDED | ExpandableComposite.EXPANDED);
- if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION)){
- TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(taxonBaseDetailSection);
- }else{
- if (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_TAXON)){
- TaxonBaseDetailSection taxonBaseDetailSection = formFactory.createTaxonBaseDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(taxonBaseDetailSection);
- }
- }
- NonViralNameDetailSection nonViralNameSection = formFactory
- .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE))){
- NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(referenceDetailSection);
-
- }
- if ( !PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS))){
- NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(nomenclaturalStatusSection);
- }
-
- if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE))){
- ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(protologSection);
- }
-
- if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION))){
- TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(typeDesignationSection);
- }
-
- if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP))){
- NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(nameRelationshipSection);
- }
-
-
- addPart(parsingMessagesSection);
-
- addPart(nonViralNameSection);
-
- }
-
- private void createNameSections(RootElement parent) {
- destroySections();
- NonViralNameDetailSection nonViralNameSection = formFactory.createNonViralNameDetailSection(
- getConversationHolder(), parent, this, false, ExpandableComposite.TWISTIE
- | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(nonViralNameSection);
- addPart(nomenclaturalStatusSection);
- addPart(referenceDetailSection);
-
- ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(protologSection);
- addPart(typeDesignationSection);
- addPart(nameRelationshipSection);
-
- }
-
- private void createReferenceSections(RootElement parent) {
- destroySections();
-
- ReferenceDetailSection referenceDetailSection = formFactory.createReferenceDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(referenceDetailSection);
- }
-
- private void createTeamOrPersonBaseDetailSection(RootElement parent) {
- destroySections();
- TeamOrPersonBaseDetailSection teamOrPersonBaseDetailSection = formFactory.createTeamOrPersonBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(teamOrPersonBaseDetailSection);
- }
-
- private void createTeamDetailSection(RootElement parent) {
- destroySections();
- TeamDetailSection teamDetailSection = formFactory.createTeamDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(teamDetailSection);
- }
-
- private void createPersonDetailSection(RootElement parent) {
- destroySections();
- PersonDetailSection personDetailSection = formFactory.createPersonDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(personDetailSection);
- }
-
- private void createDescriptionElementSection(RootElement parent) {
- destroySections();
-
- DescriptionElementDetailSection descriptionElementDetailSection = formFactory.createDescriptionElementDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- // IntextReferenceSection intextReferenceSection = formFactory.createIntextReferenceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DescriptionElementSourceSection descriptionElementSourceSection = formFactory.createDescriptionElementSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DescriptionElementMediaSection descriptionElementMediaSection = formFactory.createDescriptionElementMediaSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(descriptionElementDetailSection);
- addPart(descriptionElementSourceSection);
- addPart(descriptionElementMediaSection);
- }
-
- private void createDescriptionSection(RootElement parent) {
- destroySections();
- DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- NaturalLanguageSection naturalLanguageSection = formFactory.createNaturalLanguageSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
-// DescribedSpecimenSection describedSpecimenSection = formFactory.createDescribedSpecimenSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-//
-// formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- // DescriptionSourceSection descriptionSourceSection = (DescriptionSourceSection) formFactory
- // .createEntityDetailSection(EntityDetailType.DESCRIPTIONSOURCE,
- // getConversationHolder(), parent, Section.TWISTIE);
- //
- // formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- ScopeSection scopeSection = formFactory.createScopeSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(descriptionDetailSection);
- addPart(naturalLanguageSection);
-// addPart(describedSpecimenSection);
- // addPart(descriptionSourceSection);
- addPart(scopeSection);
- }
-
- private void createSpecimenDescriptionSection(RootElement parent) {
- destroySections();
- DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(descriptionDetailSection);
- }
-
- private void createUseDescriptionSection(RootElement parent) {
- destroySections();
- DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DescriptionSourceSection descriptionSourceSection = formFactory.createDescriptionSourceSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(descriptionDetailSection);
- addPart(descriptionSourceSection);
-
- }
-
- private void createImageGallerySection(RootElement parent) {
- destroySections();
- DescriptionDetailSection descriptionDetailSection = formFactory.createDescriptionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(descriptionDetailSection);
- }
-
- private void createMediaElementSection(RootElement parent) {
- destroySections();
-
- MediaDetailsSection mediaDetailSection = formFactory.createMediaDetailsSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(mediaDetailSection);
- }
-
- private void createDerivedUnitBaseElementSection(RootElement parent) {
- destroySections();
-
- DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
-// if(!(AbstractUtility.getActiveE4Part() instanceof IDerivedUnitFacadePart)){
-// derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
-// }
- addPart(derivedUnitGeneralDetailSection);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DerivedUnitBaseDetailSection derivedUnitBaseDetailSection = formFactory.createDerivedUnitBaseDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(derivedUnitBaseDetailSection);
-
- //for editors working with facades
- if(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart){
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
- addPart(gatheringEventDetailSection);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
- addPart(fieldUnitDetailSection);
- }
- else{
-
- if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_TAXON_ASSOCIATIONS)){
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(taxonAssociationDetailSection);
- }
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- DerivedUnitFacadeIdentifierSection identifierDetailSection = formFactory.createDerivedUnitFacadeIdentifierSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- addPart(identifierDetailSection);
- }
- if(!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
- addPart(determinationDetailSection);
- }
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- DerivedUnitTypeDesignationSection derivedUnitTypeDesignationSection = formFactory.createDerivedUnitTypeDesignationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
- addPart(derivedUnitTypeDesignationSection);
-
- }
-
- private void createFieldUnitSection(RootElement parent) {
- destroySections();
-
- FieldUnitGeneralDetailSection fielUnitGeneralDetailSection = formFactory.createFieldUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- GatheringEventDetailSection gatheringEventDetailSection = formFactory.createGatheringEventDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- FieldUnitDetailSection fieldUnitDetailSection = formFactory.createFieldUnitDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- addPart(fielUnitGeneralDetailSection);
- addPart(gatheringEventDetailSection);
- addPart(fieldUnitDetailSection);
-
- if(PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.DETERMINATION_ONLY_FOR_FIELD_UNITS)){
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- DeterminationDetailSection determinationDetailSection = formFactory.createDeterminationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
- addPart(determinationDetailSection);
- }
- }
-
- private void createTissueSampleSection(RootElement parent) {
- destroySections();
-
- TissueSampleGeneralDetailSection section = formFactory.createTissueSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(section);
- addPart(sampleDesignationDetailSection);
- }
-
- private void createDnaSampleSection(RootElement parent) {
- destroySections();
-
- DnaSampleGeneralDetailSection section = formFactory.createDnaSampleGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DnaSamplePreparationPreservationSection preparationPreservationSection = formFactory.createDnaSamplePreparationPreservationSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- DnaQualityDetailSection qualitySection = formFactory.createDnaQualityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- SampleDesignationDetailSection sampleDesignationDetailSection = formFactory.createSampleDesignationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(section);
- addPart(preparationPreservationSection);
- addPart(qualitySection);
- addPart(sampleDesignationDetailSection);
- }
-
- private void createSequenceSection(RootElement parent) {
- destroySections();
-
- SequenceGeneralDetailSection section = formFactory.createSequenceGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- SequenceReferenceCollectionDetailSection referenceSection = formFactory.createSequenceReferenceCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- SequenceContigFileCollectionDetailSection contigFileSection = formFactory.createSequenceContigFileCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
-
- addPart(section);
- addPart(referenceSection);
- addPart(contigFileSection);
- }
-
- private void createSingleReadSection(RootElement parent) {
- destroySections();
-
- SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(section);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(pherogramSection);
-
- }
-
- private void createMediaSpecimenSection(RootElement parent) {
- destroySections();
-
- MediaSpecimenGeneralDetailSection generalSection = formFactory.createMediaSpecimenGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(generalSection);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- RightsSection rightsSection = formFactory.createRightsSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- addPart(rightsSection);
-
- }
-
- private void createFeatureDistributionSection(RootElement parent) {
- destroySections();
-
- FeatureDistributionDetailSection featureDistributionSection = formFactory.createFeatureDistributionDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(featureDistributionSection);
- }
-
- private void createPolytomousKeyNodeSection(RootElement parent) {
- destroySections();
-
- PolytomousKeyDetailSection polytomousKeyDetailSection = formFactory.createPolytomousKeyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- PolytomousKeyNodeDetailSection polytomousKeyNodeDetailSection = formFactory.createPolytomousKeyNodeDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(polytomousKeyDetailSection);
- addPart(polytomousKeyNodeDetailSection);
-
- }
-
- private void createUseRecordSection(RootElement parent) {
- destroySections();
-
- UseRecordDetailSection descriptionUseRecordSection = formFactory.createUseRecordDetailSection(getConversationHolder(), parent, this,ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- addPart(descriptionUseRecordSection);
-
-
- }
-
- private void createUserSection(RootElement parent) {
- destroySections();
-
- UserDetailSection userDetailSection = formFactory.createUserDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- GroupsByUserDetailSection groupByUserDetailSection = formFactory.createGroupsByUserDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(userDetailSection);
- addPart(groupByUserDetailSection);
- }
-
- private void createMisappliedNameSection(RootElement parent) {
- destroySections();
-
- TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- // ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(taxonRelationshipDetailSection);
- //addPart(referencedEntityBaseDetailSection);
-
- NonViralNameDetailSection nonViralNameSection = formFactory
- .createNonViralNameDetailSection(getConversationHolder(), parent, this, true,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(nonViralNameSection);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- //if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_REFERENCE))){
- NomenclaturalReferenceDetailSection referenceDetailSection = formFactory.createNomenclaturalReferenceDetailSection(getConversationHolder(), parent, this,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(referenceDetailSection);
-
- //if ( !PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NOMENCLATURAL_STATUS))){
- NomenclaturalStatusSection nomenclaturalStatusSection = formFactory.createNomenclaturalStatusSection(getConversationHolder(), parent,
- ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(nomenclaturalStatusSection);
- //}
-
- //if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_PROTOLOGUE))){
- ProtologueSection protologSection = formFactory.createProtologueSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(protologSection);
- //}
-
- //if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_TYPE_DESIGNATION))){
- TypeDesignationSection typeDesignationSection = formFactory.createTypeDesignationSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(typeDesignationSection);
- //}
-
- //if (!PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) || (PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_SIMPLE_NAME_DETAILS_SECTION) && PreferencesUtil.getPreferenceStore().getBoolean(IPreferenceKeys.SHOW_NAME_DETAILS_SECTION_NAME_RELATIONSHIP))){
- NameRelationshipDetailSection nameRelationshipSection = formFactory.createNameRelationshipDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE);
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- addPart(nameRelationshipSection);
- //}
-
-
- //}
- }
-
- private void createTaxonRelationshipSection(RootElement parent) {
- destroySections();
-
- TaxonRelationshipDetailSection taxonRelationshipDetailSection = formFactory.createTaxonRelationshipDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- ReferencedEntityDetailSection referencedEntityBaseDetailSection = formFactory.createReferencedEntityDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(taxonRelationshipDetailSection);
- addPart(referencedEntityBaseDetailSection);
- }
- private void createTermVocabularySection(RootElement parent) {
- destroySections();
-
- TermVocabularyDetailSection termVocabularyDetailSection = formFactory.createTermVocabularyDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(termVocabularyDetailSection);
- }
-
- private void createDefinedTermSection(RootElement parent) {
- destroySections();
-
- AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
- addPart(definedTermDetailSection);
- }
-
- @Override
- public void update(CdmDataChangeMap arg0) {
-
- }
-
-}
BGBM BDI Projects / taxeditor.git / commitdiff