import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;
-import eu.etaxonomy.cdm.api.service.ITermService;
import eu.etaxonomy.cdm.ext.occurrence.gbif.GbifResponse;
import eu.etaxonomy.cdm.model.agent.Person;
import eu.etaxonomy.cdm.model.agent.Team;
import eu.etaxonomy.cdm.model.common.DefinedTermBase;
import eu.etaxonomy.cdm.model.common.Group;
import eu.etaxonomy.cdm.model.common.Marker;
-import eu.etaxonomy.cdm.model.common.MarkerType;
import eu.etaxonomy.cdm.model.common.TermVocabulary;
import eu.etaxonomy.cdm.model.common.User;
import eu.etaxonomy.cdm.model.description.CategoricalData;
import eu.etaxonomy.cdm.model.description.PolytomousKeyNode;
import eu.etaxonomy.cdm.model.description.SpecimenDescription;
import eu.etaxonomy.cdm.model.media.Media;
-import eu.etaxonomy.cdm.model.molecular.Amplification;
import eu.etaxonomy.cdm.model.molecular.DnaSample;
import eu.etaxonomy.cdm.model.molecular.Sequence;
import eu.etaxonomy.cdm.model.molecular.SingleRead;
import eu.etaxonomy.cdm.model.reference.Reference;
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
-import eu.etaxonomy.taxeditor.editor.UsageTermCollection;
import eu.etaxonomy.taxeditor.model.AbstractUtility;
import eu.etaxonomy.taxeditor.model.FeatureNodeContainer;
import eu.etaxonomy.taxeditor.model.IDerivedUnitFacadePart;
+import eu.etaxonomy.taxeditor.model.MessagingUtils;
import eu.etaxonomy.taxeditor.model.PolytomousKeyRelationship;
import eu.etaxonomy.taxeditor.preference.IPreferenceKeys;
import eu.etaxonomy.taxeditor.preference.PreferencesUtil;
-import eu.etaxonomy.taxeditor.store.CdmStore;
+import eu.etaxonomy.taxeditor.store.UsageTermCollection;
import eu.etaxonomy.taxeditor.ui.element.AbstractFormSection;
import eu.etaxonomy.taxeditor.ui.element.RootElement;
import eu.etaxonomy.taxeditor.ui.section.agent.PersonDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.GatheringEventDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.OriginalLabelDataSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.association.TaxonAssociationDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationCloningDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGelPhotoCollectionDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationGeneralDetailSection;
-import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.AmplificationPrimerDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaQualityDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.DnaSampleGeneralDetailSection;
import eu.etaxonomy.taxeditor.ui.section.occurrence.dna.SampleDesignationDetailSection;
// editor
// and not derived unit facade objects,
- /*
- * (non-Javadoc)
- *
- * @see
- * eu.etaxonomy.taxeditor.editor.view.AbstractCdmDataViewer#setInput(java
- * .lang.Object)
- */
@Override
public void setInput(Object input) {
if(input instanceof TreeNode){
// END HACK TO MAKE THE DERIVED UNIT FACADE WORK
- /*
- * (non-Javadoc)
- *
- * @see org.eclipse.jface.viewers.Viewer#refresh()
- */
+
/** {@inheritDoc} */
@Override
protected void showParts() {
createSpecimenDescriptionSection(rootElement);
}
else{
- Set<Marker> descriptionMarkers = ((DescriptionBase) input).getMarkers();
- MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
- UsageTermCollection.uuidUseMarkerType);
+ Set<Marker> descriptionMarkers = ((DescriptionBase<?>) input).getMarkers();
+
Boolean isUseDescription = false;
for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType().equals(useMarkertype)) {
+ if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
isUseDescription = true;
}
}
- if (((DescriptionBase) input).isImageGallery()) {
+ if (((DescriptionBase<?>) input).isImageGallery()) {
createImageGallerySection(rootElement);
} else if (isUseDescription) {
}
} else if (input instanceof DescriptionElementBase) {
Set<Marker> descriptionMarkers = ((DescriptionElementBase) input).getInDescription().getMarkers();
- MarkerType useMarkertype = (MarkerType) CdmStore.getService(ITermService.class).find(
- UsageTermCollection.uuidUseMarkerType);
+
Boolean isUseDescription = false;
for (Marker marker : descriptionMarkers) {
- if (marker.getMarkerType().equals(useMarkertype)) {
+ if (marker.getMarkerType()!= null && marker.getMarkerType().getUuid().equals(UsageTermCollection.uuidUseMarkerType)) {
isUseDescription = true;
}
}
} else if (input instanceof DerivedUnitFacade) {
if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.FieldUnit){
- createFieldUnitSection(rootElement);
+ if(((DerivedUnitFacade) input).innerFieldUnit()==null){
+ MessagingUtils.error(DetailsViewer.class, "FieldUnit of facade is null", null);
+ }
+ else{
+ createFieldUnitSection(rootElement);
+ }
}
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.PreservedSpecimen){
- createDerivedUnitBaseElementSection(rootElement);
+ if(((DerivedUnitFacade) input).innerDerivedUnit()==null){
+ MessagingUtils.error(DetailsViewer.class, "DerivedUnit of facade is null", null);
+ }
+ else{
+ createDerivedUnitBaseElementSection(rootElement);
+ }
}
else if(((DerivedUnitFacade) input).getType()==SpecimenOrObservationType.TissueSample){
//TissueSample should only be created by using it's own class
} else if (input instanceof MediaSpecimen){
createMediaSpecimenSection(rootElement);
}
- else if(input instanceof Amplification){
- createAmplificationSection(rootElement);
- }
else if(input instanceof Sequence){
createSequenceSection(rootElement);
}
return selection;
}
- /*
- * (non-Javadoc)
- *
- * @see
- * org.eclipse.jface.viewers.Viewer#setSelection(org.eclipse.jface.viewers
- * .ISelection, boolean)
- */
/** {@inheritDoc} */
@Override
public void setSelection(ISelection selection, boolean reveal) {
destroySections();
DerivedUnitGeneralDetailSection derivedUnitGeneralDetailSection = formFactory.createDerivedUnitGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ //TODO for DerivateEditor do not use facade anymore to avoid this special case handling #4539
+ if(!(AbstractUtility.getActivePart() instanceof IDerivedUnitFacadePart)){
+ derivedUnitGeneralDetailSection.setShowOnlyDerivedUnitData(true);
+ }
addPart(derivedUnitGeneralDetailSection);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
- OriginalLabelDataSection originalLabelDataSection = formFactory.createOriginalLabelDataSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ OriginalLabelDataSection originalLabelDataSection = formFactory.createOriginalLabelDataSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE);
addPart(originalLabelDataSection);
//for editors working with facades
TaxonAssociationDetailSection taxonAssociationDetailSection = formFactory.createTaxonAssociationDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(taxonAssociationDetailSection);
}
-
+
}
private void createFieldUnitSection(RootElement parent) {
addPart(sampleDesignationDetailSection);
}
- private void createAmplificationSection(RootElement parent) {
- destroySections();
- AmplificationGeneralDetailSection generalSection = formFactory.createAmplificationGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- AmplificationPrimerDetailSection primerSection = formFactory.createAmplificationPrimerDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- AmplificationCloningDetailSection cloningSection = formFactory.createAmplificationCloningDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- formFactory.createHorizontalSeparator(parent, SWT.BORDER);
-
- AmplificationGelPhotoCollectionDetailSection gelPhotoSection = formFactory.createAmplificationGelPhotoCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
-
- addPart(generalSection);
- addPart(primerSection);
- addPart(cloningSection);
- addPart(gelPhotoSection);
- }
-
private void createSequenceSection(RootElement parent) {
destroySections();
destroySections();
SingleReadGeneralDetailSection section = formFactory.createSingleReadGeneralDetailSection(getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ addPart(section);
formFactory.createHorizontalSeparator(parent, SWT.BORDER);
SingleReadPherogramCollectionDetailSection pherogramSection = formFactory.createSingleReadPherogramCollectionDetailSection(getConversationHolder(), parent, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
-
- addPart(section);
addPart(pherogramSection);
+
}
private void createMediaSpecimenSection(RootElement parent) {
private void createDefinedTermSection(RootElement parent) {
destroySections();
- AbstractFormSection definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
+ AbstractFormSection<?> definedTermDetailSection = formFactory.createDefinedTermDetailSection(getInput().getClass(), getConversationHolder(), parent, this, ExpandableComposite.TWISTIE | ExpandableComposite.EXPANDED);
addPart(definedTermDetailSection);
}